Excoffier, Laurent

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2016

Alves, Isabel; Arenas Busto, Miguel; Currat, Mathias; Sramkova Hanulova, Anna; Martins Conde e Sousa, Vitor; Ray, Nicolas; Excoffier, Laurent (2016). Long distance dispersal shaped patterns of human genetic diversity in Eurasia. Molecular Biology and Evolution, 33(4), pp. 946-958. Oxford University Press 10.1093/molbev/msv332

Marques, David Alexander; Lucek, Kay Jurka Olaf; Meier, Joana; Mwaiko, Salome; Wagner, Catherine; Excoffier, Laurent; Seehausen, Ole (2016). Genomics of Rapid Incipient Speciation in Sympatric Threespine Stickleback. PLoS genetics, 12(2), e1005887. Public Library of Science 10.1371/journal.pgen.1005887

Henn, Brenna M.; Botigué, Laura R.; Peischl, Stephan; Duperret, Isabelle; Lipatov, Mikhail; Maples, Brian K.; Martin, Alicia R.; Musharoff, Shaila; Cann, Howard; Snyder, Michael P.; Excoffier, Laurent; Kidd, Jeffrey M.; Bustamante, Carlos D. (2016). Distance from Sub-Saharan Africa Predicts Mutational Load in Diverse Human Genomes. Proceedings of the National Academy of Sciences of the United States of America - PNAS, 113(4), E440-E449. National Academy of Sciences NAS 10.1073/pnas.1510805112

Marques, David Alexander; Lucek, Kay Jurka Olaf; Häsler, Marcel; Feller, Anna Fiona; Meier, Joana; Wagner, Catherine; Excoffier, Laurent; Seehausen, Ole (2016). Genomic landscape of early ecological speciation initiated by selection on nuptial colour. Molecular Ecology, 26(1), pp. 7-24. Wiley-Blackwell 10.1111/mec.13774

Meier, Joana; Martins Conde e Sousa, Vitor; Marques, David Alexander; Selz, Oliver; Wagner, Catherine; Excoffier, Laurent; Seehausen, Ole (2016). Demographic modeling with whole genome data reveals parallel origin of similar Pundamilia cichlid species after hybridization. Molecular Ecology, 26(1), pp. 123-141. Wiley-Blackwell 10.1111/mec.13838

2015

Peischl, Stephan; Excoffier, Laurent (2015). Expansion load: recessive mutations and the role of standing genetic variation. Molecular Ecology, 24(9), pp. 2084-2094. Wiley-Blackwell 10.1111/mec.13154

Peischl, Stephan; Kirkpatrick, Mark; Excoffier, Laurent (2015). Expansion Load and the Evolutionary Dynamics of a Species Range. American naturalist, 185(4), E81-E93. University of Chicago Press 10.1086/680220

Botigué, Laura R.; Henn, Brenna M.; Peischl, Stephan; Dupanloup, Isabelle; Lipatov, Mikhail; Maples, Brian K.; Martin, Alicia R.; Yee, M.C.; Cann, Howard; Snyder, Michael P.; Excoffier, Laurent; Kidd, Jeffrey M.; Bustamante, Carlos D. (2015). The Out of Africa expansion affected accumulation of deleterious alleles in human genomes. American Journal of Physical Anthropology, 156(S60), pp. 90-91. Wiley

Amorim, Carlos Eduardo G.; Daub, Joséphine; Salzano, Francisco M.; Foll, Matthieu; Excoffier, Laurent (2015). Detection of convergent genome-wide signals of adaptation to tropical forests in humans. PLoS ONE, 10(4), pp. 1-19. Public Library of Science 10.1371/journal.pone.0121557

Daub, Joséphine; Duperret, Isabelle; Robinson-Rechavi, Marc; Excoffier, Laurent (2015). Inference of evolutionary forces acting on human biological pathways. Genome biology and evolution, 7(6), pp. 1546-1558. Oxford University Press 10.1093/gbe/evv083

2014

Martins Conde e Sousa, Vitor; Peischl, Stephan; Excoffier, Laurent (2014). Impact of range expansions on current human genomic diversity. Current opinion in genetics & development, 29, pp. 22-30. Elsevier 10.1016/j.gde.2014.07.007

Fischer, Martin; Foll, Matthieu; Heckel, Gerald; Excoffier, Laurent (2014). Continental-Scale Footprint of Balancing and Positive Selection in a Small Rodent (Microtus arvalis). PLoS ONE, 9(11), e112332. Public Library of Science

Foll, Matthieu; Gaggiotti, Oscar; Daub, Joséphine; Vatsiou, Alexandra; Excoffier, Laurent (2014). Widespread Signals of Convergent Adaptation to High Altitude in Asia and America. American journal of human genetics, 95(4), pp. 394-407. Cell Press 10.1016/j.ajhg.2014.09.002

Lischer, Heidi; Excoffier, Laurent; Heckel, Gerald (2014). Ignoring heterozygous sites biases phylogenomic estimates of divergence times: implications for the evolutionary history of Microtus voles. Molecular Biology and Evolution, 31(4), pp. 817-831. Oxford University Press 10.1093/molbev/mst271

Mona, Stefano; Ray, Nicolas; Arenas Busto, Miguel; Excoffier, Laurent (2014). Genetic consequences of habitat fragmentation during a range expansion. Heredity, 112(3), pp. 291-299. Oliver and Boyd 10.1038/hdy.2013.105

Perry, George H.; Foll, Matthieu; Grenier, Jean-Christophe; Patin, Etienne; Nédélec, Yohann; Pacis, Alain; Barakatt, Maxime; Gravel, Simon; Zhou, Xiang; Nsobya, Sam L.; Excoffier, Laurent; Quintana-Murci, Lluis; Dominy, Nathaniel J.; Barreiro, Luis B. (2014). Adaptive, convergent origins of the pygmy phenotype in African rainforest hunter-gatherers. Proceedings of the National Academy of Sciences of the United States of America - PNAS, 111(35), E3596-E3603. National Academy of Sciences NAS 10.1073/pnas.1402875111

Schubert, Mikkel; Jónsson, Hákon; Chang, Dan; Der Sarkissian, Clio; Ermini, Luca; Ginolhac, Aurélien; Albrechtsen, Anders; Dupanloup, Isabelle; Foucal, Adrien; Petersen, Bent; Fumagalli, Matteo; Raghavan, Maanasa; Seguin-Orlando, Andaine; Korneliussen, Thorfinn S.; Velazquez, Amhed M. V.; Stenderup, Jesper; Hoover, Cindi A.; Rubin, Carl-Johan; Alfarhan, Ahmed H.; Alquraishi, Saleh A.; ... (2014). Prehistoric genomes reveal the genetic foundation and cost of horse domestication. Proceedings of the National Academy of Sciences of the United States of America - PNAS, 111(52), E5661-E5669. National Academy of Sciences NAS 10.1073/pnas.1416991111

Arenas Busto, Miguel; Mona, Stefano; Trochet, Audrey; Sramkova Hanulova, Anna; Currat, Mathias; Ray, Nicolas; Chikhi, Lounes; Rasteiro, Rita; Schmeller, Dirk S.; Excoffier, Laurent (2014). The scaling of genetic diversity in a changing and fragmented world. In: Henle, Klaus; Potts, Simon; Kunin, William; Matsinos, Yiannis; Simila, Jukka; Pantis, John; Grobelnik, Vesna; Penev, Lyubomir; Settele, Josef (eds.) Scaling in Ecology and Biodiversity Conservation. Advanced Books (pp. 55-60). Sofia, Bulgaria: Pensoft Publishers

Excoffier, Laurent; Quilodrán, Claudio; Currat, Mathias (2014). Models of hybridization during range expansions and their application to recent human evolution. In: Derevianko, A.P.; Shunkov, M.V. (eds.) Cultural Developments in the Eurasian Paleolithic and the Origin of Anatomically Modern Humans (pp. 122-137). Novosibirsk: Publishing Department of the Institute of Archaeology and Ethnography SB RAS

2013

Excoffier, Laurent; Dupanloup, Isabelle; Huerta-Sánchez, Emilia; Sousa, Vitor C.; Foll, Matthieu (2013). Robust demographic inference from genomic and SNP data. PLoS genetics, 9(10), e1003905. Public Library of Science 10.1371/journal.pgen.1003905

Martinkova, Natália; Barnett, Ross; Cucchi, Thomas; Struchen, Rahel; Pascal, Marine; Pascal, Michel; Fischer, Martin C.; Higham, Thomas; Brace, Selina; Ho, Simon Y. W.; Quere, Jean-Pierre; O'Higgins, Paul; Excoffier, Laurent; Heckel, Gerald; Hoelzel, A. Rus; Dobney, Keith M.; Searle, Jeremy B. (2013). Divergent evolutionary processes associated with colonization of offshore islands. Molecular Ecology, 22(20), pp. 5205-5220. Wiley-Blackwell 10.1111/mec.12462

Daub, Joséphine; Hofer, Tamara; Cutivet, Emilie; Duperret, Isabelle; Quintana-Murci, L; Robinson-Rechavi, M; Excoffier, Laurent (2013). Evidence for Polygenic Adaptation to Pathogens in the Human Genome. Molecular Biology and Evolution, 30(7), pp. 1544-1558. Oxford University Press 10.1093/molbev/mst080

Arenas, Miguel; François, Olivier; Currat, Mathias; Ray, Nicolas; Excoffier, Laurent (2013). Influence of Admixture and Paleolithic Range Contractions on Current European Diversity Gradients. Molecular Biology and Evolution, 30(1), pp. 57-61. Oxford University Press 10.1093/molbev/mss203

Peischl, Stephan; Duperret, Isabelle; Kirkpatrick, Mark; Excoffier, Laurent (2013). On the accumulation of deleterious mutations during range expansions. Molecular Ecology, 22(24), pp. 5972-5982. Wiley-Blackwell 10.1111/mec.12524

2012

Alves, Isabel; Srámková Hanulová, A.; Foll, Matthieu; Excoffier, Laurent (2012). Genomic Data Reveal a Complex Making of Humans. PLoS genetics, 8(7), e1002837. San Francisco, Calif.: Public Library of Science 10.1371/journal.pgen.1002837

Arenas, M.; Ray, N.; Currat, M.; Excoffier, L. (2012). Consequences of Range Contractions and Range Shifts on Molecular Diversity. Molecular Biology and Evolution, 29(1), pp. 207-218. Oxford: Oxford University Press 10.1093/molbev/msr187

Caetano, S.; Currat, M.; Pennington, R.T.; Prado, D.; Excoffier, L.; Naciri, Y. (2012). Recent colonization of the Galapagos by the tree Geoffroea spinosa Jacq. (Leguminosae). Molecular Ecology, 21(11), pp. 2743-2760. Oxford: Wiley-Blackwell 10.1111/j.1365-294X.2012.05562.x

Hofer, Tamara; Foll, Matthieu; Excoffier, Laurent (2012). Evolutionary forces shaping genomic islands of population differentiation in humans. BMC Genomics, 13(1), p. 107. London: BioMed Central 10.1186/1471-2164-13-107

Kormann, U.; Gugerli, F.; Ray, N.; Excoffier, L.; Bollmann, K. (2012). Parsimony-based pedigree analysis and individual-based landscape genetics suggest topography to restrict dispersal and connectivity in the endangered capercaillie. Biological conservation, 152, pp. 241-252. Barking, UK: Elsevier 10.1016/j.biocon.2012.04.011

Lischer, H.E.L.; Excoffier, L. (2012). PGDSpider: an automated data conversion tool for connecting population genetics and genomics programs. Bioinformatics, 28(2), pp. 298-299. Oxford: Oxford University Press 10.1093/bioinformatics/btr642

Pimenoff, V.N.; Laval, G.; Comas, D.; Palo, J.U.; Gut, I.; Cann, H.; Excoffier, L.; Sajantila, A. (2012). Similarity in recombination rate and linkage disequilibrium at CYP2C and CYP2D cytochrome P450 gene regions among Europeans indicates signs of selection and no advantage of using tagSNPs in population isolates. Pharmacogenetics and genomics, 22(12), pp. 846-857. London: Lippincott Williams & Wilkins 10.1097/FPC.0b013e32835a3a6d

Reich, D; Patterson, N; Campbell, D; Tandon, A; Mazieres, S; Ray, N; Parra, MV; Rojas, W; Duque, C; Mesa, N; García, LF; Triana, O; Blair, S; Maestre, A; Dib, JC; Bravi, CM; Bailliet, G; Corach, D; Hünemeier, T; Bortolini, MC; ... (2012). Reconstructing Native American population history. Nature, 488(7411), pp. 370-374. London: Macmillan Journals Ltd. 10.1038/nature11258

Slatkin, M.; Excoffier, L. (2012). Serial Founder Effects During Range Expansion: A Spatial Analog of Genetic Drift. Genetics, 191(1), pp. 171-181. Bethesda, Md.: Genetics Society of America 10.1534/genetics.112.139022

Widmer, I.; dal Grande, F.; Excoffier, L.; Holderegger, R.; Keller, C.; Mikryukov, V.S.; Scheidegger, C. (2012). European phylogeography of the epiphytic lichen fungus Lobaria pulmonaria and its green algal symbiont. Molecular Ecology, 21(23), pp. 5827-5844. Oxford: Wiley-Blackwell 10.1111/mec.12051

2011

Bittner, David; Cossins, Andrew R; Segner, Helmut; Excoffier, Laurent; Largiadèr, Carlo R (2011). Identification of candidate genes and physiological pathways involved in gonad deformation in whitefish (Coregonus spp.) from Lake Thun, Switzerland. International journal of environmental research and public health, 8(7), pp. 2706-33. Basel: Molecular Diversity Preservation International MDPI 10.3390/ijerph8072706

Currat, Mathias; Excoffier, Laurent (2011). Strong reproductive isolation between humans and Neanderthals inferred from observed patterns of introgression. Proceedings of the National Academy of Sciences of the United States of America - PNAS, 108(37), pp. 15129-15134. Washington, D.C.: National Academy of Sciences NAS 10.1073/pnas.1107450108

Excoffier, Laurent; Foll, Matthieu (2011). fastsimcoal: a continuous-time coalescent simulator of genomic diversity under arbitrarily complex evolutionary scenarios. Bioinformatics, 27(9), pp. 1332-1334. Oxford: Oxford University Press 10.1093/bioinformatics/btr124

Fischer, Martin C.; Foll, Matthieu; Excoffier, Laurent; Heckel, Gerald (2011). Enhanced AFLP genome scans detect local adaptation in high-altitude populations of a small rodent (Microtus arvalis). Molecular Ecology, 20(7), pp. 1450-1462. Oxford: Wiley-Blackwell 10.1111/j.1365-294X.2011.05015.x

Laurent, S.; Werzner, A.; Excoffier, L.; Stephan, W. (2011). Approximate Bayesian analysis of Drosophila melanogaster polymorphism data reveals a recent colonization of Southeast Asia. Molecular Biology and Evolution, 28(7), pp. 2041-2051. Oxford: Oxford University Press 10.1093/molbev/msr031

Moreau, Claudia; Bhérer, Claude; Vézina, Hélène; Jomphe, Michèle; Labuda, Damian; Excoffier, Laurent (2011). Deep Human Genealogies Reveal a Selective Advantage to Be on an Expanding Wave Front. Science, 334(6059), pp. 1148-1150. Washington, D.C.: American Association for the Advancement of Science 10.1126/science.1212880

2010

Bittner, D; Excoffier, L; Largiadèr, C R (2010). Patterns of morphological changes and hybridization between sympatric whitefish morphs (Coregonus spp.) in a Swiss lake: a role for eutrophication? Molecular Ecology, 19(10), pp. 2152-67. Oxford: Wiley-Blackwell 10.1111/j.1365-294X.2010.04623.x

Beaumont, Mark A.; Nielsen, Rasmus; Robert, Christian; Hey, Jody; Gaggiotti, Oscar; Knowles, Lacey; Estoup, Arnaud; Panchal, Mahesh; Corander, Jukka; Hickerson, Mike; Sisso, Scott A.; Fagundes, Nelson; Chikhi, Lounes; Beerli, Peter; Vitalis, Renaud; Cornuet, Jean-Marie; Huelsenbeck, John; Foll, Matthieu; Yang, Ziheng; Rousset, Fraçois; ... (2010). In defence of model-based inference in phylogeography. Molecular Ecology, 19(3), pp. 436-446. Oxford: Wiley-Blackwell 10.1111/j.1365-294X.2009.04515.x

Estoup, Arnaud; Baird, Stuart J.E.; Ray, Nicolas; Currat, Mathias; Cornuet, Jean-Marie; Santos, Filipe; Beaumont, Mark A.; Excoffier, Laurent (2010). Combining genetic, historical and geographical data to reconstruct the dynamics of bioinvasions: application to the cane toad Bufo marinus. Molecular ecology resources, 10(5), pp. 886-901. Oxford: Blackwell Science 10.1111/j.1755-0998.2010.02882.x

Excoffier, Laurent; Lischer, Heidi E.L. (2010). Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows. Molecular ecology resources, 10(3), pp. 564-567. Oxford: Blackwell Science 10.1111/j.1755-0998.2010.02847.x

Fink, Sabine; Fischer, Martin C.; Excoffier, Laurent; Heckel, Gerald (2010). Genomic scans support repetitive continental colonization events during the rapid radiation of voles (Rodentia: Microtus): the utility of AFLPs versus mitochondrial and nuclear sequence markers. Systematic biology, 59(5), pp. 548-572. Cary, N.C.: Oxford University Press 10.1093/sysbio/syq042

Foll, Matthieu; Fischer, Martin C.; Heckel, Gerald; Excoffier, Laurent (2010). Estimating population structure from AFLP amplification intensity. Molecular Ecology, 19(21), pp. 4638-4647. Oxford: Wiley-Blackwell 10.1111/j.1365-294X.2010.04820.x

Francois, Olivier; Currat, Mathias; Ray, Nicolas; Han, Eunjung; Excoffier, Laurent; Novembre, John (2010). Principal Component Analysis under Population Genetic Models of Range Expansion and Admixture. Molecular Biology and Evolution, 27(6), pp. 1257-1268. Oxford: Oxford University Press 10.1093/molbev/msq010

Henle, Klaus; Kunin, William; Schweiger, Oliver; Schmeller, Dirk S.; Grobelnik, Vesna; Matsinos, Yiannis; Pantis, John; Penev, Lyubomir; Potts, Simon G.; Ring, Irene; Similä, Jukka; Tzanopoulos, Joseph; van den Hove, Sybille; Baguette, Michel; Clobert, Jean; Excoffier, Laurent; Framstad, Erik; Grodzińska-Jurczak, Małgorzata; Lengyel, Szabolcs; Marty, Pascal; ... (2010). Securing the Conservation of Biodiversity across Administrative Levels and Spatial, Temporal, and Ecological Scales - Research Needs and Approaches of the SCALES Project. GAIA - ökologische Perspektiven für Wissenschaft und Gesellschaft / ecological perspectives for science and society, 19(3), pp. 187-193. München: Oekom Verlag

Peter, Benjamin P.; Wegmann, Daniel; Excoffier, Laurent (2010). Distinguishing between population bottleneck and population subdivision by a Bayesian model choice procedure. Molecular Ecology, 19(21), pp. 4648-4660. Oxford: Wiley-Blackwell 10.1111/j.1365-294X.2010.04783.x

Ray, Nicolas; Currat, Mathias; Foll, Matthieu; Excoffier, Laurent (2010). SPLATCHE2: a spatially-explicit simulation framework for complex demography, genetic admixture and recombination. Bioinformatics, 26(23), pp. 2993-2994. Oxford: Oxford University Press 10.1093/bioinformatics/btq579

Ray, Nicolas; Excoffier, Laurent (2010). A first step towards inferring levels of long-distance dispersal during past expansions. Molecular ecology resources, 10(5), pp. 902-914. Oxford: Blackwell Science 10.1111/j.1755-0998.2010.02881.x

Ray, Nicolas; Wegmann, Daniel; Fagundes, Nelson J.R.; Wang, S.; Ruiz-Linares, Andres; Excoffier, Laurent (2010). A statistical evaluation of models for the initial settlement of the American continent emphasizes the importance of gene flow with Asia. Molecular Biology and Evolution, 27(2), pp. 337-345. Oxford: Oxford University Press 10.1093/molbev/msp238

Wegmann, Daniel; Excoffier, Laurent (2010). Bayesian Inference of the Demographic History of Chimpanzees. Molecular Biology and Evolution, 27(6), pp. 1425-1435. Oxford: Oxford University Press 10.1093/molbev/msq028

Wegmann, Daniel; Leuenberger, Christoph; Neuenschwander, Samuel; Excoffier, Laurent (2010). ABCtoolbox: a versatile toolkit for approximate Bayesian computations. BMC bioinformatics, 11(1), p. 116. London: BioMed Central 10.1186/1471-2105-11-116

Yang, Ning Ning; Mazières, Stephane; Bravi, Claudio; Ray, Nicolas; Wang, Sijia; Burley, Mari-Wyn; Bedoya, Gabriel; Rojas, Winston; Parra, Maria V.; Molina, Julio A.; Gallo, Carla; Poletti, Giovanni; Hill, Kim; Hurtado, Ana M.; Petzl-Erler, Maria L.; Tsuneto, Luiza T.; Klitz, William; Barrantes, Ramiro; Llop, Elena; Rothhammer, Francisco; ... (2010). Contrasting Patterns of Nuclear and mtDNA Diversity in Native American Populations. Annals of human genetics, 74(6), pp. 525-538. Oxford: Wiley-Blackwell 10.1111/j.1469-1809.2010.00608.x

2009

Excoffier, Laurent; Foll, Matthieu; Petit, Rémy J. (2009). Genetic Consequences of Range Expansions. Annual review of ecology, evolution, and systematics, 40(1), pp. 481-501. Palo Alto, Calif.: Annual Reviews Inc. 10.1146/annurev.ecolsys.39.110707.173414

Excoffier, Laurent; Hofer, Tamara; Foll, Matthieu (2009). Detecting loci under selection in a hierarchically structured population. Heredity, 103(4), pp. 285-298. London: Oliver and Boyd 10.1038/hdy.2009.74

Hofer, Tamara; Ray, Nicolas; Wegmann, Daniel; Excoffier, Laurent (2009). Large allele frequency differences between human continental groups are more likely to have occurred by drift during range expansions than by selection. Annals of human genetics, 73(Part 1), pp. 95-108. Oxford: Wiley-Blackwell 10.1111/j.1469-1809.2008.00489.x

Makrythanasis, Periklis; Kapranov, Philipp; Bartoloni, Lucia; Reymond, Alexandre; Deutsch, Samuel; Guigo, Roderic; Denoeud, France; Drenkow, Jorg; Rossier, Colette; Ariani, Francesca; Capra, Valeria; Excoffier, Laurent; Renieri, Alessandra; Gingeras, Thomas R.; Antonarakis, Stylianos E. (2009). Variation in Novel Exons (RACEfrags) of the MECP2 Gene in Rett Syndrome Patients and Controls. Human mutation, 30(9), E866 - E879. Hoboken, N.J.: Wiley-Blackwell 10.1002/humu.21073

Petit, Rémy J.; Excoffier, Laurent (2009). Gene flow and species delimitation. Trends in ecology & evolution, 24(7), pp. 386-393. Amsterdam: Elsevier Current Trends 10.1016/j.tree.2009.02.011

Poloni, Estella S.; Naciri, Yamama; Bucho, Rute; Niba, Régine; Kervaire, Barbara; Excoffier, Laurent; Langaney, André; Sanchez-Mazas, Alicia (2009). Genetic Evidence for Complexity in Ethnic Differentiation and History in East Africa. Annals of human genetics, 73(6), pp. 582-600. Oxford: Wiley-Blackwell 10.1111/j.1469-1809.2009.00541.x

Ray, Nicolas; Excoffier, Laurent (2009). Inferring past demography using spatially-explicit population genetic models. Human biology, 81(2-3), pp. 141-157. Detroit, Mich.: Wayne State University Press 10.3378/027.081.0303

Soland-Reckeweg, Gabriele; Heckel, Gerald; Neumann, Peter; Fluri, Peter; Excoffier, Laurent (2009). Gene flow in admixed populations and implications for the conservation of the Western honeybee, Apis mellifera. Journal of insect conservation, 13(3), pp. 317-328. London: Chapman & Hall 10.1007/s10841-008-9175-0

Wegmann, Daniel; Leuenberger, Christoph; Excoffier, Laurent (2009). Efficient Approximate Bayesian Computation Coupled With Markov Chain Monte Carlo Without Likelihood. Genetics, 182(4), pp. 1207-1218. Bethesda, Md.: Genetics Society of America 10.1534/genetics.109.102509

2008

Giger, Thomas; Excoffier, Laurent; Amstutz, Ursula; Day, Philip J R; Champigneulle, Alexis; Hansen, Michael M; Kelso, Janet; Largiadèr, Carlo R (2008). Population transcriptomics of life-history variation in the genus Salmo. Molecular Ecology, 17(13), pp. 3095-3108. Oxford: Wiley-Blackwell 10.1111/j.1365-294X.2008.03820.x

Neuenschwander, Samuel; Largiadèr, Carlo R; Ray, Nicolas; Currat, Mathias; Vonlanthen, Pascal; Excoffier, Laurent (2008). Colonization history of the Swiss Rhine basin by the bullhead (Cottus gobio): inference under a Bayesian spatially explicit framework. Molecular Ecology, 17(3), pp. 757-772. Oxford: Wiley-Blackwell 10.1111/j.1365-294X.2007.03621.x

Currat, M.; Ray, N.; Excoffier, L. (2008). Genetic simulations of population interactions during past human expansions in Europe. In: Matsumura, S.; Forster, P.; Renfrew, C. (eds.) Simulations, Genetics and Human Prehistory (pp. 37-47). Cambridge: McDonald Institute for Archaeological Research

Currat, Mathias; Ruedi, Manuel; Petit, Rémy J.; Excoffier, Laurent (2008). The hidden side of invasions: massive introgression by local genes. Evolution, 62(8), pp. 1908-1920. Hoboken, N.J.: Wiley 10.1111/j.1558-5646.2008.00413.x

Excoffier, Laurent; Ray, Nicolas (2008). Surfing during population expansions promotes genetic revolutions and structuration. Trends in ecology & evolution, 23(7), pp. 347-351. Amsterdam: Elsevier Current Trends 10.1016/j.tree.2008.04.004

Excoffier, L.; Ray, N.; Currat, M. (2008). Where was Paradise? A simulation study of the spread of early modern humans in heterogeneous environments. In: Matsumura, S.; Forster, P.; Renfrew, C. (eds.) Simulations, Genetics and Human Prehistory (pp. 9-18). Cambridge: McDonald Institute for Archaeological Research

Fagundes, Nelson J. R.; Ray, Nicolas; Beaumont, Mark; Neuenschwander, Samuel; Salzano, Francisco M.; Bonatto, Sandro L.; Excoffier, Laurent (2008). Reply to Garrigan and Hammer: Ancient lineages and assimilation. Proceedings of the National Academy of Sciences of the United States of America - PNAS, 105(2), E4. Washington, D.C.: National Academy of Sciences NAS 10.1073/pnas.0711261105

Ray, N.; Currat, M.; Excoffier, L. (2008). Incorporating environmental heterogeneity in spatially-explicit simulations of human genetic diversity. In: Matsumura, S.; Forster, P.; Renfrew, C. (eds.) Simulations, Genetics and Human Prehistory (pp. 103-117). Cambridge: McDonald Institute for Archaeological Research

Ruedi, Manuel; Walter, Simon; Fischer, Martin C.; Scaravelli, Dino; Excoffier, Laurent; Heckel, Gerald (2008). Italy as a major Ice Age refuge area for the bat Myotis myotis (Chiroptera: Vespertilionidae) in Europe. Molecular Ecology, 17(7), pp. 1801-1814. Oxford: Wiley-Blackwell 10.1111/j.1365-294X.2008.03702.x

Wang, Sijia; Ray, Nicolas; Rojas, Winston; Parra, Maria V.; Bedoya, Gabriel; Gallo, Carla; Poletti, Giovanni; Mazzotti, Guido; Hill, Kim; Hurtado, Ana M.; Camrena, Beatriz; Nicolini, Humberto; Klitz, William; Barrantes, Ramiro; Molina, Julio A.; Freimer, Nelson B.; Bortolini, Maria Cátira; Salzano, Francisco M.; Petzl-Erler, Maria L.; Tsuneto, Luiza T.; ... (2008). Geographic Patterns of Genome Admixture in Latin American Mestizos. PLoS genetics, 4(3), e1000037. San Francisco, Calif.: Public Library of Science 10.1371/journal.pgen.1000037

Wegmann, Daniel; Dupanloup, Isabelle; Excoffier, Laurent (2008). Width of Gene Expression Profile Drives Alternative Splicing. PLoS ONE, 3(10), e3587. Lawrence, Kans.: Public Library of Science 10.1371/journal.pone.0003587

2007

Vonlanthen, Pascal; Excoffier, Laurent; Bittner, David; Persat, H; Neuenschwander, S; Largiadèr, Carlo (2007). Genetic analysis of potential postglacial watershed crossings in central Europe by the bullhead (Cottus gobio L). Molecular Ecology, 16(21), pp. 4572-4584. Oxford: Wiley-Blackwell 10.1111/j.1365-294X.2007.03531.x

Giger, Thomas; Amstutz, Ursula; Excoffier, Laurent; Champigneulle, Alexis; Day, Philip; Powell, Richard; Largiadèr, Carlo (2007). The genetic basis of smoltification: Functional genomics tools facilitate the search for the needle in the haystack. In: Harris, Graeme; Millner, Nigel (eds.) Sea Trout: Biology Conservation and Management (pp. 183-195). Chichester: John Wiley & Sons 10.1002/9780470996027.ch13

Excoffier, Laurent (2007). Analysis of Population Subdivision. In: Balding, David J.; Bishop, Martin; Cannings, Chris (eds.) Handbook of Statistical Genetics (pp. 980-1020). Chichester: John Wiley & Sons

Fagundes, Nelson; Ray, Nicolas; Beaumont, Mark; Neuenschwander, Samuel; Salzano, Francisco; Bonatto, Sandro; Excoffier, Laurent (2007). Statistical evaluation of alternative models of human evolution. Proceedings of the National Academy of Sciences of the United States of America - PNAS, 104(45), pp. 17614-17619. Washington, D.C.: National Academy of Sciences NAS 10.1073/pnas.0708280104

Fink, Sabine; Excoffier, Laurent; Heckel, Gerhard (2007). High variability and non-neutral evolution of the mammalian avpr1a gene. BMC evolutionary biology, 7(1), p. 176. London: BioMed Central 10.1186/1471-2148-7-176

Pawlowski, Jan; Fahrni, José; Lecroq, B; Longet, David; Cornelius, N; Excoffier, Laurent; Cedhagen, Tomas; Gooday, Andrew (2007). Bipolar gene flow in deep-sea benthic foraminifera. Molecular Ecology, 16(19), pp. 4089-4096. Oxford: Wiley-Blackwell 10.1111/j.1365-294X.2007.03465.x

Schweizer, Manuel; Excoffier, Laurent; Heckel, Gerald (2007). Fine-scale genetic structure and dispersal in the common vole (Microtus arvalis). Molecular Ecology, 16(12), pp. 2463-2473. Oxford: Wiley-Blackwell 10.1111/j.1365-294X.2007.03284.x

Wang, Sijia; Lewis, Cecil; Jakobsson, Mattias; Ramachandran, Sohini; Ray, Nicolas; Bedoya, Gabriel; Rojas, Winston; Parra, Maria; Molina, Julio; Gallo, Carla; Mazzotti, Guido; Poletti, Giovanni; Hill, Kim; Hurtado, Ana; Labuda, Damian; Klitz, William; Barrantes, Ramiro; Bortolini, Maria; Salzano, Francisco; Petzl-Erler, Maria; ... (2007). Genetic Variation and Population Structure in Native Americans. PLoS genetics, 3(11), e185. San Francisco, Calif.: Public Library of Science 10.1371/journal.pgen.0030185

2006

Giger, Thomas; Excoffier, Laurent; Day, Philip J R; Champigneulle, Alexis; Hansen, Michael M; Powell, Richard; Largiadèr, Carlo R (2006). Life history shapes gene expression in salmonids. Current Biology, 16(8), R281-R282. Cambridge, Mass.: Cell Press 10.1016/j.cub.2006.03.053

Currat, Mathias; Excoffier, Laurent; Maddison, Wayne; Otto, Sarah; Ray, Nicolas; Whitlock, Michael; Yeaman, Sam (2006). Comment on "Ongoing adaptive evolution of ASPM, a brain size determinant in Homo sapiens" and "Microcephalin, a gene regulating brain size, continues to evolve adaptively in humans". Science, 313(5784), p. 172. Washington, D.C.: American Association for the Advancement of Science 10.1126/science.1122712

Berthier, Pierre; Excoffier, Laurent; Ruedi, Manuel (2006). Replacement of mtDNA and cryptic hybridization between two sibling bat species Myotis myotis and Myotis blythii. Proceedings of the Royal Society. Series B - biological sciences, 273(1605), pp. 3101-3123. London: Royal Society of London 10.1098/rspb.2006.3680

Drake, Jared; Bird, Christine; Nemesh, James; Thomas, Daryl; Newton-Cheh, Christopher; Reymond, Alexandre; Excoffier, Laurent; Attar, Homa; Antonarakis, Stylianos; Dermitzakis, Emmanouil; Hirschhorn, Joel (2006). Conserved noncoding sequences are selectively constrained and not mutation cold spots. Nature genetics, 38(2), pp. 223-227. New York, N.Y.: Nature America 10.1038/ng1710

Excoffier, Laurent (2006). Neandertal genetic diversity: A fresh look from old samples. Current Biology, 16(16), R650-R652. Cambridge, Mass.: Cell Press 10.1016/j.cub.2006.07.035

Excoffier, Laurent; Heckel, Gerald (2006). Computer programs for population genetics data analysis: a survival guide. Nature reviews - genetics, 7(10), pp. 745-758. London: Nature Publishing Group 10.1038/nrg1904

Fink, Sabine; Excoffier, Laurent; Heckel, Gerald (2006). Mammalian monogamy is not controlled by a single gene. Proceedings of the National Academy of Sciences of the United States of America - PNAS, 103(29), pp. 10956-10960. Washington, D.C.: National Academy of Sciences NAS 10.1073/pnas.0602380103

Klopfstein, Seraina; Currat, Mathias; Excoffier, Laurent (2006). The fate of mutations surfing on the wave of a range expansion. Molecular Biology and Evolution, 23(3), pp. 482-490. Oxford: Oxford University Press 10.1093/molbev/msj057

Wegmann, Daniel; Currat, Mathias; Excoffier, Laurent (2006). Molecular diversity after a range expansion in heterogeneous environments. Genetics, 174(4), pp. 2009-2020. Bethesda, Md.: Genetics Society of America 10.1534/genetics.106.062851

2004

Currat, Mathias; Excoffier, Laurent (2004). Modern Humans Did Not Admix with Neanderthals during Their Range Expansion into Europe. PLoS biology, 2(12), e421. Public Library of Science 10.1371/journal.pbio.0020421

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