Ramette, Alban Nicolas

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Ramette, Alban; Kuehni, Claudia Elisabeth (2015). Bed-sharing and childhood asthma: from associations to causal modelling. European respiratory journal, 45(3), pp. 596-600. European Respiratory Society 10.1183/09031936.00234814

Raulf, Felix F.; Fabricius, Katharina; Uthicke, Sven; de Beer, Dirk; Abed, Raeid M. M.; Ramette, Alban Nicolas (2015). Changes in microbial communities in coastal sediments along natural CO 2 gradients at a volcanic vent in Papua New Guinea. Environmental microbiology, 17(10), pp. 3678-3691. Wiley-Blackwell 10.1111/1462-2920.12729

Ramette, Alban Nicolas; Spycher, Ben; Beardsmore, Caroline; Kühni, Claudia (2015). Causal relationships between infections and asthma throughout childhood: A path analysis approach. European respiratory journal, 46(suppl 59), PA4512. European Respiratory Society 10.1183/13993003.congress-2015.pa4512

Wang, Jingying; Ramette, Alban Nicolas; Jurca, Maja; Halbeisen, Florian; Beardsmore, Caroline; Kühni, Claudia (2015). Does breastfeeding protect against childhood eczema? European respiratory journal, 46(suppl 59), OA1975. European Respiratory Society 10.1183/13993003.congress-2015.oa1975

Jurca, Maja; Ramette, Alban Nicolas; Spycher, Ben; Goutaki, Myrofora; Wang, Jingying; Latzin, Philipp; Gaillard, Erol; Kühni, Claudia (2015). Risk factors for chronic non-specific cough in 0-2 year olds: A cohort study. European respiratory journal, 46(suppl 59), OA4769. European Respiratory Society 10.1183/13993003.congress-2015.oa4769

Ruff, S. Emil; Biddle, Jennifer F.; Teske, Andreas P.; Knittel, Katrin; Boetius, Antje; Ramette, Alban Nicolas (2015). Global dispersion and local diversification of the methane seep microbiome. Proceedings of the National Academy of Sciences of the United States of America - PNAS, 112(13), pp. 4015-4020. National Academy of Sciences NAS 10.1073/pnas.1421865112


Zimmermann, Judith; Lott, Christian; Weber, Miriam; Ramette, Alban Nicolas; Bright, Monika; Dubilier, Nicole; Petersen, Jillian M. (2014). Dual symbiosis with co-occurring sulfur-oxidizing symbionts in vestimentiferan tubeworms from a Mediterranean hydrothermal vent. Environmental microbiology, 16(12), pp. 3638-3656. Wiley-Blackwell 10.1111/1462-2920.12427

Buttigieg, Pier Luigi; Ramette, Alban Nicolas (2014). A guide to statistical analysis in microbial ecology: a community-focused, living review of multivariate data analyses. FEMS Microbiology Ecology, 90(3), pp. 543-550. Wiley 10.1111/1574-6941.12437

Zinger, L.; Boetius, A.; Ramette, Alban Nicolas (2014). Bacterial taxa-area and distance-decay relationships in marine environments. Molecular Ecology, 23(4), pp. 954-964. Wiley-Blackwell 10.1111/mec.12640

Al-Najjar, Mohammad A. A.; Ramette, Alban Nicolas; Kühl, Michael; Hamza, Waleed; Klatt, Judith M.; Polerecky, Lubos (2014). Spatial patterns and links between microbial community composition and function in cyanobacterial mats. Frontiers in Microbiology, 5(406), p. 406. Frontiers 10.3389/fmicb.2014.00406

Ramette, Alban Nicolas; Buttigieg, Pier Luigi (2014). The R package otu2ot for implementing the entropy decomposition of nucleotide variation in sequence data. Frontiers in Microbiology, 5(601) Frontiers 10.3389/fmicb.2014.00601


Gobet, Angélique; Boetius, Antje; Ramette, Alban Nicolas (2013). Ecological coherence of diversity patterns derived from classical fingerprinting and Next Generation Sequencing techniques. Environmental microbiology, 16(9), pp. 2672-2681. Wiley-Blackwell 10.1111/1462-2920.12308

Meyer, Stefanie; Wegener, Gunter; Lloyd, Karen G.; Teske, Andreas; Boetius, Antje; Ramette, Alban Nicolas (2013). Microbial habitat connectivity across spatial scales and hydrothermal temperature gradients at Guaymas Basin. Frontiers in Microbiology, 4(207) Frontiers 10.3389/fmicb.2013.00207


Pop Ristova, P.; Wenzhöfer, F.; Ramette, Alban Nicolas; Zabel, M.; Fischer, D.; Kasten, S.; Boetius, A. (2012). Bacterial diversity and biogeochemistry of different chemosynthetic habitats of the REGAB cold seep (West African margin, 3160 m water depth). Biogeosciences Discussions, 9(7), pp. 8337-8385. Copernicus 10.5194/bgd-9-8337-2012

Amend, Anthony S.; Oliver, Tom A.; Amaral-Zettler, Linda A.; Boetius, Antje; Fuhrman, Jed A.; Horner-Devine, M. Claire; Huse, Susan M.; Welch, David B. Mark; Martiny, Adam C.; Ramette, Alban Nicolas; Zinger, Lucie; Sogin, Mitchell L.; Martiny, Jennifer B. H.; Lambshead, John (2012). Macroecological patterns of marine bacteria on a global scale. Journal of Biogeography, 40(4), pp. 800-811. Blackwell Scientific Publications 10.1111/jbi.12034

Pop Ristova, P.; Wenzhöfer, F.; Ramette, Alban Nicolas; Zabel, M.; Fischer, D.; Kasten, S.; Boetius, A. (2012). Bacterial diversity and biogeochemistry of different chemosynthetic habitats of the REGAB cold seep (West African margin, 3160 m water depth). Biogeosciences, 9(12), pp. 5031-5048. Copernicus Publications 10.5194/bg-9-5031-2012

Gobet, Angélique; Böer, Simone I; Huse, Susan M; van Beusekom, Justus E E; Quince, Christopher; Sogin, Mitchell L; Boetius, Antje; Ramette, Alban Nicolas (2012). Diversity and dynamics of rare and of resident bacterial populations in coastal sands. The ISME Journal, 6(3), pp. 542-553. Nature 10.1038/ismej.2011.132

Kleindienst, Sara; Ramette, Alban Nicolas; Amann, Rudolf; Knittel, Katrin (2012). Distribution and in situ abundance of sulfate-reducing bacteria in diverse marine hydrocarbon seep sediments. Environmental microbiology, 14(10), pp. 2689-2710. Wiley-Blackwell 10.1111/j.1462-2920.2012.02832.x

Grünke, S.; Lichtschlag, A.; de Beer, D.; Felden, J.; Salman, V.; Ramette, Alban Nicolas; Schulz-Vogt, H. N.; Boetius, A. (2012). Mats of psychrophilic thiotrophic bacteria associated with cold seeps of the Barents Sea. Biogeosciences, 9(8), pp. 2947-2960. Copernicus Publications 10.5194/bg-9-2947-2012

Abed, Raeid M.M.; Ramette, Alban Nicolas; Hübner, Vera; Deckker, Patrick; Beer, Dirk (2012). Microbial diversity of eolian dust sources from saline lake sediments and biological soil crusts in arid Southern Australia. FEMS Microbiology Ecology, 80(2), pp. 294-304. Wiley 10.1111/j.1574-6941.2011.01289.x

Bienhold, Christina; Boetius, Antje; Ramette, Alban Nicolas (2012). The energy–diversity relationship of complex bacterial communities in Arctic deep-sea sediments. The ISME Journal, 6(4), pp. 724-732. Nature 10.1038/ismej.2011.140


Kostadinov, Ivaylo; Kottmann, Renzo; Ramette, Alban Nicolas; Waldmann, Jost; Buttigieg, Pier Luigi; Glöckner, Frank (2011). Quantifying the effect of environment stability on the transcription factor repertoire of marine microbes. Microbial Informatics and Experimentation, 1(1), p. 9. BioMed Central 10.1186/2042-5783-1-9

Schöttner, Sandra; Pfitzner, Barbara; Grünke, Stefanie; Rasheed, Mohammed; Wild, Christian; Ramette, Alban Nicolas (2011). Drivers of bacterial diversity dynamics in permeable carbonate and silicate coral reef sands from the Red Sea. Environmental microbiology, 13(7), pp. 1815-1826. Wiley-Blackwell 10.1111/j.1462-2920.2011.02494.x

Rossel, Pamela E.; Elvert, Marcus; Ramette, Alban Nicolas; Boetius, Antje; Hinrichs, Kai-Uwe (2011). Factors controlling the distribution of anaerobic methanotrophic communities in marine environments: Evidence from intact polar membrane lipids. Geochimica et cosmochimica acta, 75(1), pp. 164-184. Elsevier Science 10.1016/j.gca.2010.09.031

Bru, D; Ramette, Alban Nicolas; Saby, N P A; Dequiedt, S; Ranjard, L; Jolivet, C; Arrouays, D; Philippot, L (2011). Determinants of the distribution of nitrogen-cycling microbial communities at the landscape scale. The ISME Journal, 5(3), pp. 532-542. Nature 10.1038/ismej.2010.130

Ramette, Alban Nicolas; Frapolli, Michele; Saux, Marion Fischer-Le; Gruffaz, C.; Meyer, Jean-Marie; Défago, Geneviève; Sutra, Laurent; Moënne-Loccoz, Yvan (2011). Pseudomonas protegens sp. nov., widespread plant-protecting bacteria producing the biocontrol compounds 2,4-diacetylphloroglucinol and pyoluteorin. Systematic and applied microbiology, 34(3), pp. 180-188. Elsevier 10.1016/j.syapm.2010.10.005


Amaral-Zettler, Linda; Artigas, Luis Felipe; Baross, John; Bharathi P.A., Loka; Boetius, Antje; Chandramohan, Dorairajasingam; Herndl, Gerhard; Kogure, Kazuhiro; Neal, Phillip; Pedrós-Alió, Carlos; Ramette, Alban Nicolas; Schouten, Stefan; Stal, Lucas; Thessen, Anne; Leeuw, Jan de; Sogin, Mitchell (2010). A Global Census of Marine Microbes. In: McIntyre, Alasdair D. (ed.) Life in the World’s Oceans: Diversity, Distribution, and Abundance (pp. 221-245). Oxford: Blackwell Publishing Ltd 10.1002/9781444325508.ch12

Schauer, Regina; Bienhold, Christina; Ramette, Alban Nicolas; Harder, Jens (2010). Bacterial diversity and biogeography in deep-sea surface sediments of the South Atlantic Ocean. The ISME Journal, 4(2), pp. 159-170. Nature 10.1038/ismej.2009.106

Petersen, Jillian M.; Ramette, Alban Nicolas; Lott, Christian; Cambon-Bonavita, Marie-Anne; Zbinden, Magali; Dubilier, Nicole (2010). Dual symbiosis of the vent shrimp Rimicaris exoculata with filamentous gamma- and epsilonproteobacteria at four Mid-Atlantic Ridge hydrothermal vent fields. Environmental microbiology, 12(8), pp. 2204-2218. Wiley-Blackwell 10.1111/j.1462-2920.2009.02129.x

Verna, Caroline; Ramette, Alban Nicolas; Wiklund, Helena; Dahlgren, Thomas G.; Glover, Adrian G.; Gaill, Françoise; Dubilier, Nicole (2010). High symbiont diversity in the bone-eating worm Osedax mucofloris from shallow whale-falls in the North Atlantic. Environmental microbiology, 12(8), pp. 2355-2370. Wiley-Blackwell 10.1111/j.1462-2920.2010.02299.x

Orcutt, Beth N.; Joye, Samantha B.; Kleindienst, Sara; Knittel, Katrin; Ramette, Alban Nicolas; Reitz, Anja; Samarkin, Vladimir; Treude, Tina; Boetius, Antje (2010). Impact of natural oil and higher hydrocarbons on microbial diversity, distribution, and activity in Gulf of Mexico cold-seep sediments. Deep-sea research. Part 2 - topical studies in oceanography, 57(21-23), pp. 2008-2021. Elsevier Science 10.1016/j.dsr2.2010.05.014

Alonso, C; Gómez-Pereira, P; Ramette, Alban Nicolas; Ortega, L; Fuchs, BM; Amann, R (2010). Multilevel analysis of the bacterial diversity along the environmental gradient Río de la Plata–South Atlantic Ocean. Aquatic Microbial Ecology, 61(1), pp. 57-72. Inter-Research 10.3354/ame01439

Gobet, A.; Quince, C.; Ramette, Alban Nicolas (2010). Multivariate Cutoff Level Analysis (MultiCoLA) of large community data sets. Nucleic acids research, 38(15), e155. Oxford University Press 10.1093/nar/gkq545

Grünke, Stefanie; Lichtschlag, Anna; Beer, Dirk de; Kuypers, Marcel; Lösekann-Behrens, Tina; Ramette, Alban Nicolas; Boetius, Antje (2010). Novel observations of Thiobacterium, a sulfur-storing Gammaproteobacterium producing gelatinous mats. The ISME Journal, 4(8), pp. 1031-1043. Nature 10.1038/ismej.2010.23

Knief, Claudia; Ramette, Alban Nicolas; Frances, Lisa; Alonso-Blanco, Carlos; Vorholt, Julia A (2010). Site and plant species are important determinants of the Methylobacterium community composition in the plant phyllosphere. The ISME Journal, 4(6), pp. 719-728. Nature 10.1038/ismej.2010.9

Meziti, Alexandra; Ramette, Alban Nicolas; Mente, Eleni; Kormas, Konstantinos Ar. (2010). Temporal shifts of the Norway lobster (Nephrops norvegicus) gut bacterial communities. FEMS Microbiology Ecology, 74(2), pp. 472-484. Wiley 10.1111/j.1574-6941.2010.00964.x

Santillano, D.; Boetius, A.; Ramette, Alban Nicolas (2010). Improved dsrA-Based Terminal Restriction Fragment Length Polymorphism Analysis of Sulfate-Reducing Bacteria. Applied and environmental microbiology, 76(15), pp. 5308-5311. American Society for Microbiology 10.1128/AEM.03004-09


Zhao, Shuo; Ramette, Alban Nicolas; Niu, Gui-Lan; Liu, Hong; Zhou, Ning-Yi (2009). Effects of nitrobenzene contamination and of bioaugmentation on nitrification and ammonia-oxidizing bacteria in soil. FEMS Microbiology Ecology, 70(2), pp. 315-323. Wiley 10.1111/j.1574-6941.2009.00773.x

Ramette, Alban Nicolas; Boetius, Antje (2009). Crystal ball - 2009. Environmental Microbiology Reports, 1(1), pp. 3-26. Wiley 10.1111/j.1758-2229.2008.00010.x

Ramette, Alban Nicolas; Tiedje, J.M.; Boetius, A. (2009). Impact of space, time and complex environments on microbial communities. Clinical microbiology and infection, 15(Suppl. 1), pp. 60-62. Blackwell Publishing 10.1111/j.1469-0691.2008.02692.x

Schöttner, Sandra; Hoffmann, Friederike; Wild, Christian; Rapp, Hans Tore; Boetius, Antje; Ramette, Alban Nicolas (2009). Inter- and intra-habitat bacterial diversity associated with cold-water corals. The ISME Journal, 3(6), pp. 756-759. Nature 10.1038/ismej.2009.15

Ramette, Alban Nicolas (2009). Quantitative Community Fingerprinting Methods for Estimating the Abundance of Operational Taxonomic Units in Natural Microbial Communities. Applied and environmental microbiology, 75(8), pp. 2495-2505. American Society for Microbiology 10.1128/AEM.02409-08

Böer, Simone I; Hedtkamp, Stefanie I C; van Beusekom, Justus E E; Fuhrman, Jed A; Boetius, Antje; Ramette, Alban Nicolas (2009). Time- and sediment depth-related variations in bacterial diversity and community structure in subtidal sands. The ISME Journal, 3(7), pp. 780-791. Nature 10.1038/ismej.2009.29

Kanzog, Corinna; Ramette, Alban Nicolas; Quéric, Nadia V.; Klages, Michael (2009). Response of benthic microbial communities to chitin enrichment: an in situ study in the deep Arctic Ocean. Polar Biology, 32(1), pp. 105-112. Springer 10.1007/s00300-008-0510-4

Kanzog, Corinna; Ramette, Alban Nicolas (2009). Microbial colonisation of artificial and deep-sea sediments in the Arctic Ocean. Marine ecology progress series, 30(4), pp. 391-404. Inter-Research 10.1111/j.1439-0485.2009.00290.x


Jacobs, J. L.; Fasi, A. C.; Ramette, Alban Nicolas; Smith, J. J.; Hammerschmidt, R.; Sundin, G. W. (2008). Identification and Onion Pathogenicity of Burkholderia cepacia Complex Isolates from the Onion Rhizosphere and Onion Field Soil. Applied and environmental microbiology, 74(10), pp. 3121-3129. American Society for Microbiology 10.1128/AEM.01941-07

Amaral-Zettler, Linda; Peplies, Jörg; Ramette, Alban Nicolas; Fuchs, Bernhard; Ludwig, Wolfgang; Glöckner, Frank Oliver (2008). Proceedings of the international workshop on Ribosomal RNA technology, April 7–9, 2008, Bremen, Germany. Systematic and applied microbiology, 31(4), pp. 258-268. Elsevier 10.1016/j.syapm.2008.08.004


Ramette, Alban Nicolas; Tiedje, James M. (2007). Biogeography: An Emerging Cornerstone for Understanding Prokaryotic Diversity, Ecology, and Evolution. Microbial ecology, 53(2), pp. 197-207. Springer 10.1007/s00248-005-5010-2

Ramette, Alban Nicolas; Tiedje, J. M. (2007). Multiscale responses of microbial life to spatial distance and environmental heterogeneity in a patchy ecosystem. Proceedings of the National Academy of Sciences of the United States of America - PNAS, 104(8), pp. 2761-2766. National Academy of Sciences NAS 10.1073/pnas.0610671104

Ramette, Alban Nicolas (2007). Multivariate analyses in microbial ecology. FEMS Microbiology Ecology, 62(2), pp. 142-160. Wiley 10.1111/j.1574-6941.2007.00375.x


Chain, P. S. G.; Denef, V. J.; Konstantinidis, K. T.; Vergez, L. M.; Agullo, L.; Reyes, V. L.; Hauser, L.; Cordova, M.; Gomez, L.; Gonzalez, M.; Land, M.; Lao, V.; Larimer, F.; LiPuma, J. J.; Mahenthiralingam, E.; Malfatti, S. A.; Marx, C. J.; Parnell, J. J.; Ramette, Alban Nicolas; Richardson, P.; ... (2006). Burkholderia xenovorans LB400 harbors a multi-replicon, 9.73-Mbp genome shaped for versatility. Proceedings of the National Academy of Sciences of the United States of America - PNAS, 103(42), pp. 15280-15287. National Academy of Sciences NAS 10.1073/pnas.0606924103

Konstantinidis, K. T.; Ramette, Alban Nicolas; Tiedje, J. M. (2006). The bacterial species definition in the genomic era. Philosophical transactions of the Royal Society. Series B - biological sciences, 361(1475), pp. 1929-1940. Royal Society of London 10.1098/rstb.2006.1920

Konstantinidis, K. T.; Ramette, Alban Nicolas; Tiedje, J. M. (2006). Toward a More Robust Assessment of Intraspecies Diversity, Using Fewer Genetic Markers. Applied and environmental microbiology, 72(11), pp. 7286-7293. American Society for Microbiology 10.1128/AEM.01398-06

Payne, George W.; Ramette, Alban Nicolas; Rose, Helen L.; Weightman, Andrew J.; Jones, T. Hefin; Tiedje, James M.; Mahenthiralingam, Eshwar (2006). Application of a recA gene-based identification approach to the maize rhizosphere reveals novel diversity in Burkholderia species. FEMS microbiology letters, 259(1), pp. 126-132. Wiley-Blackwell 10.1111/j.1574-6968.2006.00257.x

Ramette, Alban Nicolas; Möenne-Loccoz, Yvan; Défago, Geneviève (2006). Genetic diversity and biocontrol potential of fluorescent pseudomonads producing phloroglucinols and hydrogen cyanide from Swiss soils naturally suppressive or conducive to Thielaviopsis basicola-mediated black root rot of tobacco. FEMS Microbiology Ecology, 55(3), pp. 369-381. Wiley 10.1111/j.1574-6941.2005.00052.x


Ramette, Alban Nicolas; LiPuma, J. J.; Tiedje, J. M. (2005). Species Abundance and Diversity of Burkholderia cepacia Complex in the Environment. Applied and environmental microbiology, 71(3), pp. 1193-1201. American Society for Microbiology 10.1128/AEM.71.3.1193-1201.2005


Ramette, Alban Nicolas; Frapolli, Michele; Défago, Geneviève; Moënne-Loccoz, Yvan (2003). Phylogeny of HCN Synthase-Encoding hcnBC Genes in Biocontrol Fluorescent Pseudomonads and Its Relationship with Host Plant Species and HCN Synthesis Ability. Molecular Plant-Microbe Interactions, 16(6), pp. 525-535. American Phytopathological Society 10.1094/MPMI.2003.16.6.525

Ramette, Alban Nicolas; Moenne-Loccoz, Yvan; Défago, Geneviève (2003). Prevalence of fluorescent pseudomonads producing antifungal phloroglucinols and/or hydrogen cyanide in soils naturally suppressive or conducive to tobacco black root rot. FEMS Microbiology Ecology, 44(1), pp. 35-43. Wiley 10.1111/j.1574-6941.2003.tb01088.x


Wang, Chunxia; Ramette, Alban Nicolas; Punjasamarnwong, Patchara; Zala, Marcello; Natsch, Andreas; Moenne-Loccoz, Yvan; Défago, Geneviève (2001). Cosmopolitan distribution of phlD-containing dicotyledonous crop-associated biocontrol pseudomonads of worldwide origin. FEMS Microbiology Ecology, 37(2), pp. 105-116. Elsevier 10.1111/j.1574-6941.2001.tb00858.x

Ramette, Alban Nicolas; Moënne-Loccoz, Yvan; Défago, Geneviève (2001). Polymorphism of the Polyketide Synthase Gene phlD in Biocontrol Fluorescent Pseudomonads Producing 2,4-Diacetylphloroglucinol and Comparison of PhlD with Plant Polyketide Synthases. Molecular Plant-Microbe Interactions, 14(5), pp. 639-652. American Phytopathological Society 10.1094/mpmi.2001.14.5.639

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