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Zwyer, Michaela; Rutaihwa, Liliana K; Windels, Etthel; Hella, Jerry; Menardo, Fabrizio; Sasamalo, Mohamed; Sommer, Gregor; Schmülling, Lena; Borrell, Sonia; Reinhard, Miriam; Dötsch, Anna; Hiza, Hellen; Stritt, Christoph; Sikalengo, George; Fenner, Lukas; De Jong, Bouke C; Kato-Maeda, Midori; Jugheli, Levan; Ernst, Joel D; Niemann, Stefan; ... (2023). Back-to-Africa introductions of Mycobacterium tuberculosis as the main cause of tuberculosis in Dar es Salaam, Tanzania. PLoS pathogens, 19(4), e1010893. Public Library of Science 10.1371/journal.ppat.1010893
Menardo, Fabrizio; Rutaihwa, Liliana K; Zwyer, Michaela; Borrell, Sonia; Comas, Iñaki; Conceição, Emilyn Costa; Coscolla, Mireia; Cox, Helen; Joloba, Moses; Dou, Horng-Yunn; Feldmann, Julia; Fenner, Lukas; Fyfe, Janet; Gao, Qian; García de Viedma, Darío; Garcia-Basteiro, Alberto L; Gygli, Sebastian M; Hella, Jerry; Hiza, Hellen; Jugheli, Levan; ... (2021). Local adaptation in populations of Mycobacterium tuberculosis endemic to the Indian Ocean Rim [version 2; peer review: 3 approved]. F1000Research, 10, p. 60. F1000 Research Ltd 10.12688/f1000research.28318.2
Coscolla, Mireia; Gagneux, Sebastien; Menardo, Fabrizio; Loiseau, Chloé; Ruiz-Rodriguez, Paula; Borrell, Sonia; Otchere, Isaac Darko; Asante-Poku, Adwoa; Asare, Prince; Sánchez-Busó, Leonor; Gehre, Florian; Sanoussi, C N'Dira; Antonio, Martin; Affolabi, Dissou; Fyfe, Janet; Beckert, Patrick; Niemann, Stefan; Alabi, Abraham S; Grobusch, Martin P; Kobbe, Robin; ... (2021). Phylogenomics of Mycobacterium africanum reveals a new lineage and a complex evolutionary history. Microbial genomics, 7(2), 000477. Microbiology Society 10.1099/mgen.0.000477
Loiseau, Chloé; Brites, Daniela; Reinhard, Miriam; Zürcher, Kathrin; Borrell, Sonia; Ballif, Marie; Fenner, Lukas; Cox, Helen; Rutaihwa, Liliana K; Wilkinson, Robert J; Yotebieng, Marcel; Carter, E Jane; Abimiku, Alash'le; Marcy, Olivier; Gotuzzo, Eduardo; Avihingsanon, Anchalee; Zetola, Nicola; Doulla, Basra; Böttger, Erik C; Egger, Matthias; ... (2020). HIV coinfection is associated with low fitness rpoB variants in rifampicin-resistant Mycobacterium tuberculosis. Antimicrobial agents and chemotherapy, 64(10), e00782-20. American Society for Microbiology 10.1128/AAC.00782-20
Rutaihwa, Liliana K; Sasamalo, Mohamed; Jaleco, Aladino; Hella, Jerry; Kingazi, Ally; Kamwela, Lujeko; Kingalu, Amri; Malewo, Bryceson; Shirima, Raymond; Doetsch, Anna; Feldmann, Julia; Reinhard, Miriam; Borrell, Sonia; Brites, Daniela; Reither, Klaus; Doulla, Basra; Fenner, Lukas; Gagneux, Sebastien (2019). Insights into the genetic diversity of Mycobacterium tuberculosis in Tanzania. PLoS ONE, 14(4), e0206334. Public Library of Science 10.1371/journal.pone.0206334
Rutaihwa, Liliana K.; Menardo, Fabrizio; Stucki, David; Gygli, Sebastian M.; Ley, Serej D.; Malla, Bijaya; Feldmann, Julia; Borrell, Sonia; Beisel, Christian; Middelkoop, Kerren; Carter, E. Jane; Diero, Lameck; Ballif, Marie; Jugheli, Levan; Reither, Klaus; Fenner, Lukas; Brites, Daniela; Gagneux, Sebastien (2019). Multiple Introductions of Mycobacterium tuberculosis Lineage 2–Beijing Into Africa Over Centuries (In Press). Frontiers in ecology and evolution, 7, p. 112. Frontiers Media 10.3389/fevo.2019.00112
Kühnert, Denise; Coscolla, Mireia; Brites, Daniela; Stucki, David; Metcalfe, John; Fenner, Lukas; Gagneux, Sebastien; Stadler, Tanja (2018). Tuberculosis outbreak investigation using phylodynamic analysis. Epidemics, 25, pp. 47-53. Elsevier 10.1016/j.epidem.2018.05.004
Stucki, David; Brites, Daniela; Jeljeli, Leïla; Coscolla, Mireia; Liu, Qingyun; Trauner, Andrej; Fenner, Lukas; Rutaihwa, Liliana; Borrell, Sonia; Luo, Tao; Gao, Qian; Kato-Maeda, Midori; Ballif, Marie; Egger, Matthias; Macedo, Rita; Mardassi, Helmi; Moreno, Milagros; Vilanova, Griselda Tudo; Fyfe, Janet; Globan, Maria; ... (2016). Mycobacterium tuberculosis lineage 4 comprises globally distributed and geographically restricted sublineages. Nature genetics, 48(12), pp. 1535-1543. Nature America 10.1038/ng.3704
