Cavassini, Matthias

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Journal Article

Thoueille, Paul; Saldanha, Susana Alves; Schaller, Fabian; Choong, Eva; Veuve, François; Munting, Aline; Cavassini, Matthias; Braun, Dominique; Günthard, Huldrych F; Duran Ramirez, Jessy J; Surial, Bernard; Furrer, Hansjakob; Rauch, Andri; Ustero, Pilar; Calmy, Alexandra; Stöckle, Marcel; Di Benedetto, Caroline; Bernasconi, Enos; Schmid, Patrick; Marzolini, Catia; ... (2024). Population Pharmacokinetics of Cabotegravir Following Oral Administration and Long-Acting Intramuscular Injection in Real-World People with HIV. (In Press). Clinical pharmacology and therapeutics Wiley 10.1002/cpt.3240

Begré, Lorin; Boyd, Anders; Salazar-Vizcaya, Luisa; Suter, Franziska; Béguelin, Charles; Rockstroh, Jürgen K; Günthard, Huldrych F; Calmy, Alexandra; Cavassini, Matthias; Stöckle, Marcel; Schmid, Patrick; Bernasconi, Enos; Levrero, Massimo; Zoulim, Fabien; Wandeler, Gilles; Rauch, Andri (2024). Long-term quantitative hepatitis B surface antigen (HBsAg) trajectories in persons with and without HBsAg loss on tenofovir-containing antiretroviral therapy. HIV medicine, 25(2), pp. 291-298. Wiley 10.1111/hiv.13561

Berton, Mattia; Bettonte, Sara; Stader, Felix; Decosterd, Laurent; Tarr, Philip E; Livio, Françoise; Cavassini, Matthias; Braun, Dominique L; Kusejko, Katharina; Hachfeld, Anna; Bernasconi, Enos; Calmy, Alexandra; Schmid, Patrick; Battegay, Manuel; Marzolini, Catia (2024). Antiretroviral drug exposure and response in obese and morbidly obese people with HIV: a study combining modelling and Swiss HIV Cohort data. Clinical infectious diseases, 78(1), pp. 98-110. Oxford University Press 10.1093/cid/ciad495

Turk, Teja; Labarile, Marco; Braun, Dominique L; Rauch, Andri; Stöckle, Marcel; Cavassini, Matthias; Hoffmann, Matthias; Calmy, Alexandra; Bernasconi, Enos; Notter, Julia; Pasin, Chloé; Günthard, Huldrych F; Kouyos, Roger D (2024). CHARACTERIZATION AND DETERMINANTS OF LONG-TERM IMMUNE RECOVERY UNDER SUPPRESSIVE ANTIRETROVIRAL THERAPY. (In Press). Journal of acquired immune deficiency syndromes Wolters Kluwer Health 10.1097/QAI.0000000000003388

Abela, Irene A; Hauser, Anthony; Schwarzmüller, Magdalena; Pasin, Chloé; Kusejko, Katharina; Epp, Selina; Cavassini, Matthias; Battegay, Manuel; Rauch, Andri; Calmy, Alexandra; Notter, Julia; Bernasconi, Enos; Fux, Christoph A; Leuzinger, Karoline; Perreau, Matthieu; Ramette, Alban; Gottschalk, Jochen; Schindler, Eméry; Wepf, Alexander; Marconato, Maddalena; ... (2024). Deciphering factors linked with reduced SARS-CoV-2 susceptibility in the Swiss HIV Cohort Study. (In Press). The journal of infectious diseases Oxford University Press 10.1093/infdis/jiae002

Baumann, Lukas; Braun, Dominique L; Cavassini, Matthias; Stoeckle, Marcel; Bernasconi, Enos; Schmid, Patrick; Calmy, Alexandra; Haerry, David; Béguelin, Charles; Fux, Christoph A; Wandeler, Gilles; Surial, Bernard; Rauch, Andri (2024). Long-term trends in hepatitis C prevalence, treatment uptake and liver-related events in the Swiss HIV Cohort Study. Liver international, 44(1), pp. 169-179. Wiley 10.1111/liv.15754

Thoueille, Paul; Saldanha, Susana Alves; Schaller, Fabian; Choong, Eva; Munting, Aline; Cavassini, Matthias; Braun, Dominique; Günthard, Huldrych F.; Kusejko, Katharina; Surial, Bernard; Furrer, Hansjakob; Rauch, Andri; Rougemont, Mathieu; Ustero, Pilar; Calmy, Alexandra; Stöckle, Marcel; Marzolini, Catia; Di Benedetto, Caroline; Bernasconi, Enos; Schmid, Patrick; ... (2024). Real-world trough concentrations and effectiveness of long-acting cabotegravir and rilpivirine: a multicenter prospective observational study in Switzerland. The Lancet regional health. Europe, 36, p. 100793. Elsevier 10.1016/j.lanepe.2023.100793

Zeeb, Marius; Tepekule, Burcu; Kusejko, Katharina; Reiber, Claudine; Kälin, Marisa; Bartl, Lena; Notter, Julia; Furrer, Hansjakob; Hoffmann, Matthias; Hirsch, Hans H; Calmy, Alexandra; Cavassini, Matthias; Labhardt, Niklaus D; Bernasconi, Enos; Braun, Dominique L; Günthard, Huldrych F; Kouyos, Roger D; Nemeth, Johannes (2023). Understanding the decline of incident, active tuberculosis in people with HIV in Switzerland. Clinical infectious diseases, 77(9), pp. 1303-1311. Oxford University Press 10.1093/cid/ciad330

Marzolini, Catia; Cavassini, Matthias; Braun, Dominique L; Hachfeld, Anna; Bernasconi, Enos; Calmy, Alexandra; Schmid, Patrick; Battegay, Manuel; Elzi, Luigia (2023). Effect of SLCO1B1 c.521T>C polymorphism on the lipid response to statins in people living with HIV on a boosted protease inhibitor containing regimen. British journal of clinical pharmacology, 89(9), pp. 2739-2746. Wiley-Blackwell 10.1111/bcp.15754

Mugglin, Catrina; Hamusonde, Kalongo; Salazar-Vizcaya, Luisa; Kusejko, Katharina; Nicca, Dunja; Haerry, David; Braun, Dominique L; Stoeckle, Marcel; Kouyos, Roger; Calmy, Alexandra; Cavassini, Matthias; Cipriani, Michela; Bernasconi, Enos; Rauch, Andri; Hachfeld, Anna (2023). Sexual Behaviour and STI Incidence in Sexually Active MSM Living With HIV in Times of COVID-19. Open Forum Infectious Diseases, 10(8), ofad399. Oxford University Press 10.1093/ofid/ofad399

Filippidis, Paraskevas; Damas, Jose; Viala, Benjamin; Assal, Frederic; Tshikung, Olivier Nawej; Tarr, Philip; Derfuss, Tobias; Oberholzer, Michael; Jelcic, Ilijas; Hundsberger, Thomas; Sacco, Leonardo; Cavassini, Matthias; Du Pasquier, Renaud; Darling, Katharine E A (2023). Cerebrospinal fluid HIV-1 escape in patients with neurocognitive symptoms: pooled data from a neuro-HIV platform and the NAMACO study. Journal of acquired immune deficiency syndromes, 93(3), pp. 219-228. Wolters Kluwer Health 10.1097/QAI.0000000000003189

Avery, Emma F; Kleynhans, Julia N; Ledergerber, Bruno; Schoepf, Isabella C; Thorball, Christian W; Kootstra, Neeltje A; Reiss, Peter; Ryom, Lene; Braun, Dominique L; Thurnheer, Maria C; Marzolini, Catia; Seneghini, Marco; Bernasconi, Enos; Cavassini, Matthias; Buvelot, Hélène; Kouyos, Roger D; Fellay, Jacques; Günthard, Huldrych F; Tarr, Philip E (2023). Leukocyte Count and Coronary Artery Disease Events in People with HIV: A Longitudinal Study. Clinical infectious diseases, 76(11), pp. 1969-1979. Oxford University Press 10.1093/cid/ciad033

Schoepf, Isabella C; Esteban-Cantos, Andrés; Thorball, Christian W; Rodés, Berta; Reiss, Peter; Rodríguez-Centeno, Javier; Riebensahm, Carlotta; Braun, Dominique L; Marzolini, Catia; Seneghini, Marco; Bernasconi, Enos; Cavassini, Matthias; Buvelot, Hélène; Thurnheer, Maria Christine; Kouyos, Roger D; Fellay, Jacques; Günthard, Huldrych F; Arribas, José R; Ledergerber, Bruno and Tarr, Philip E (2023). Epigenetic ageing accelerates before antiretroviral therapy and decelerates after viral suppression in people with HIV in Switzerland: a longitudinal study over 17 years. The Lancet. Healthy longevity, 4(5), e211-e218. Elsevier 10.1016/S2666-7568(23)00037-5

Balakrishna, Suraj; Loosli, Tom; Zaheri, Maryam; Frischknecht, Paul; Huber, Michael; Kusejko, Katharina; Yerly, Sabine; Leuzinger, Karoline; Perreau, Matthieu; Ramette, Alban; Wymant, Chris; Fraser, Christophe; Kellam, Paul; Gall, Astrid; Hirsch, Hans H; Stoeckle, Marcel; Rauch, Andri; Cavassini, Matthias; Bernasconi, Enos; Notter, Julia; ... (2023). Frequency matters: comparison of drug resistance mutation detection by Sanger and next-generation sequencing in HIV-1. The journal of antimicrobial chemotherapy, 78(3), pp. 656-664. Oxford University Press 10.1093/jac/dkac430

Labarile, Marco; Loosli, Tom; Zeeb, Marius; Kusejko, Katharina; Huber, Michael; Hirsch, Hans H; Perreau, Matthieu; Ramette, Alban; Yerly, Sabine; Cavassini, Matthias; Battegay, Manuel; Rauch, Andri; Calmy, Alexandra; Notter, Julia; Bernasconi, Enos; Fux, Christoph; Günthard, Huldrych F; Pasin, Chloé; Kouyos, Roger D (2023). Quantifying and predicting ongoing Human Immunodeficiency Virus Type 1 (HIV-1) transmission dynamics in Switzerland using a distance-based clustering approach. The journal of infectious diseases, 227(4), pp. 554-564. Oxford University Press 10.1093/infdis/jiac457

Mauri, Fabio; Cottler-Casanova, Sara; Cavassini, Matthias; Stoeckle, Marcel; Wandeler, Gilles; Schmid, Patrick; Braun, Dominique L; Scherrer, Alexandra; Bernasconi, Enos; Calmy, Alexandra; Abdulcadir, Jasmine (2023). Female Genital Mutilation/Cutting in the Swiss HIV Cohort Study: A Cross-Sectional Study. Journal of immigrant and minority health, 25(1), pp. 136-141. Springer 10.1007/s10903-022-01390-0

Bosetti, Davide; Mugglin, Catrina; Calmy, Alexandra; Cavassini, Matthias; Stöckle, Marcel; Braun, Dominique; Notter, Julia; Haerry, David; Hampel, Benjamin; Kovari, Helen; Bernasconi, Enos; Wandeler, Gilles; Rauch, Andri (2022). Risk Factors and Incidence of Sexually Transmitted Infections in the Swiss HIV Cohort Study. Open Forum Infectious Diseases, 9(12) Oxford University Press 10.1093/ofid/ofac592

Isfordink, Cas; Boyd, Anders; Mocroft, Amanda; Kusejko, Katharina; Smit, Colette; de Wit, Stephane; Mahungu, Tabitha; Falconer, Karolin; Wandeler, Gilles; Cavassini, Matthias; Stöckle, Marcel; Schinkel, Janke; Rauch, Andri; Peters, Lars; van der Valk, Marc (2022). Low Risk of Failing Direct-Acting Antivirals in People With Human Immunodeficiency Virus/Hepatitis C Virus From Sub-Saharan Africa or Southeastern Asia: A European Cross-Sectional Study. Open Forum Infectious Diseases, 9(10), ofac508. Oxford University Press 10.1093/ofid/ofac508

Chaudron, Sandra E; Leemann, Christine; Kusejko, Katharina; Nguyen, Huyen; Tschumi, Nadine; Marzel, Alex; Huber, Michael; Böni, Jürg; Perreau, Matthieu; Klimkait, Thomas; Yerly, Sabine; Ramette, Alban; Hirsch, Hans H; Rauch, Andri; Calmy, Alexandra; Vernazza, Pietro; Bernasconi, Enos; Cavassini, Matthias; Metzner, Karin J; Kouyos, Roger D; ... (2022). A systematic molecular epidemiology screen reveals numerous HIV-1 superinfections in the Swiss HIV Cohort Study. The journal of infectious diseases, 226(7), pp. 1256-1266. Oxford University Press 10.1093/infdis/jiac166

Jakeman, Bernadette; Scherrer, Alexandra U; Darling, Katharine E A; Damas, Jose; Bieler-Aeschlimann, Melanie; Hasse, Barbara; Schlosser, Ladina; Hachfeld, Anna; Gutbrod, Klemens; Tarr, Philip E; Calmy, Alexandra; Assal, Frederic; Kunze, Ursula; Stoeckle, Marcel; Schmid, Patrick; Toller, Gianina; Rossi, Stefania; di Benedetto, Caroline; du Pasquier, Renaud; Cavassini, Matthias; ... (2022). Anticholinergic and Sedative Medications Are Associated With Neurocognitive Performance of Well Treated People With Human Immunodeficiency Virus. Open Forum Infectious Diseases, 9(9), ofac457. Oxford University Press 10.1093/ofid/ofac457

Nadeau, Sarah; Thorball, Christian W; Kouyos, Roger; Günthard, Huldrych F; Böni, Jürg; Yerly, Sabine; Perreau, Matthieu; Klimkait, Thomas; Rauch, Andri; Hirsch, Hans H; Cavassini, Matthias; Vernazza, Pietro; Bernasconi, Enos; Fellay, Jacques; Mitov, Venelin; Stadler, Tanja (2022). A phylogeny-aware GWAS framework to correct for heritable pathogen effects on infectious disease traits. Molecular Biology and Evolution, 39(8) Oxford University Press 10.1093/molbev/msac163

Kusejko, Katharina; Tschumi, Nadine; Chaudron, Sandra E; Nguyen, Huyen; Battegay, Manuel; Bernasconi, Enos; Böni, Jürg; Huber, Michael; Calmy, Alexandra; Cavassini, Matthias; Egle, Alexander; Grabmeier-Pfistershammer, Katharina; Haas, Bernhard; Hirsch, Hans; Klimkait, Thomas; Öllinger, Angela; Perreau, Matthieu; Ramette, Alban; Flury, Baharak Babouee; Sarcletti, Mario; ... (2022). Similar but different: Integrated phylogenetic analysis of Austrian and Swiss HIV-1 sequences reveal differences in transmission patterns of the local HIV-1 epidemics. Journal of acquired immune deficiency syndromes, 90(4), e4-e12. Wolters Kluwer Health 10.1097/QAI.0000000000002949

Thoueille, Paul; Alves Saldanha, Susana; Schaller, Fabian; Munting, Aline; Cavassini, Matthias; Braun, Dominique; Günthard, Huldrych F; Kusejko, Katharina; Surial, Bernard; Furrer, Hansjakob; Rauch, Andri; Ustero, Pilar; Calmy, Alexandra; Stoeckle, Marcel; Battegay, Manuel; Marzolini, Catia; Andre, Pascal; Guidi, Monia; Buclin, Thierry and Decosterd, Laurent A (2022). Real-Life Therapeutic Concentration Monitoring of Long-Acting Cabotegravir and Rilpivirine: Preliminary Results of an Ongoing Prospective Observational Study in Switzerland. Pharmaceutics, 14(8) MDPI 10.3390/pharmaceutics14081588

Bick, Alexander G; Popadin, Konstantin; Thorball, Christian W; Uddin, Md Mesbah; Zanni, Markella V; Yu, Bing; Cavassini, Matthias; Rauch, Andri; Tarr, Philip; Schmid, Patrick; Bernasconi, Enos; Günthard, Huldrych F; Libby, Peter; Boerwinkle, Eric; McLaren, Paul J; Ballantyne, Christie M; Grinspoon, Steven; Natarajan, Pradeep; Fellay, Jacques (2022). Author Correction: Increased prevalence of clonal hematopoiesis of indeterminate potential amongst people living with HIV. Scientific Reports, 12(1), p. 11638. Nature Publishing Group 10.1038/s41598-022-16151-0

Nguyen, Huyen; Hampel, Benjamin; Nuñez, David Garcia; Battegay, Manuel; Hachfeld, Anna; Bernasconi, Enos; Calmy, Alexandra; Cavassini, Matthias; Vernazza, Pietro; Fellay, Jacques; Rudolph, Hannes; Huber, Michael; Leuzinger, Karoline; Perreau, Matthieu; Scherrer, Alexandra; Ramette, Alban Nicolas; Yerly, Sabine; Günthard, Huldrych F; Kouyos, Roger D and Kusejko, Katharina (2022). Correction to: Identifying and Characterizing Trans Women in the Swiss HIV Cohort Study as an Epidemiologically Distinct Risk Group. Clinical infectious diseases, 74(12), p. 2266. Oxford University Press 10.1093/cid/ciac242

Mocroft, Amanda; Miro, Jose M; Wandeler, Gilles; Llibre, Josep M; Boyd, Anders; van Bremen, Kathrin; Beniowski, Marek; Mikhalik, Julia; Cavassini, Matthias; Maltez, Fernando; Duvivier, Claudine; Uberti Foppa, Caterina; Knysz, Brygida; Bakowska, Elzbieta; Kuzovatova, Elena; Domingo, Pere; Zagalo, Alexandra; Viard, Jean-Paul; Degen, Olaf; Milinkovic, Ana; ... (2022). The association between hepatitis B virus infection and nonliver malignancies in persons living with HIV: results from the EuroSIDA study. HIV medicine, 23(6), pp. 585-598. Wiley 10.1111/hiv.13210

Winter, Babette L; Hovaguimian, Frédérique; Kouyos, Roger D; Schmidt, Axel Jeremias; Bernasconi, Enos; Braun, Dominique L; Calmy, Alexandra; Notter, Julia; Stoeckle, Marcel; Surial, Bernard; Christinet, Vanessa; Cavassini, Matthias; Depmeier, Carsten; Läuchli, Severin; Boffi El Amari, Emmanuelle; Reinacher, Matthias; Rasi, Manuela; Bruggmann, Philip; Haerry, David; Bize, Raphaël; ... (2022). Changes in mental and sexual health among MSM using HIV pre-exposure prophylaxis during the SARS-CoV-2 pandemic: longitudinal analysis of the SwissPrEPared cohort study. Swiss medical weekly, 152, w30192. EMH Schweizerischer Ärzteverlag 10.4414/smw.2022.w30192

Tepekule, Burcu; Kusejko, Katharina; Zeeb, Marius; Tarr, Philip E; Calmy, Alexandra; Battegay, Manuel; Furrer, Hansjakob; Cavassini, Matthias; Bernasconi, Enos; Notter, Julia; Günthard, Huldrych F; Nemeth, Johannes; Kouyos, Roger D (2022). Impact of Latent Tuberculosis Infection on the Incidence of Type 2 Diabetes Mellitus in HIV-Infected Participants in the Swiss HIV Cohort Study. The journal of infectious diseases, 225(12), pp. 2229-2234. Oxford University Press 10.1093/infdis/jiac054

Branca, Mattia; Marinosci, Annalisa; Sculier, Delphine; Wandeler, Gilles; Yerly, Sabine; Stoeckle, Marcel; Bernasconi, Enos; Braun, Dominique L.; Neumann, Kathrin; Vernazza, Pietro; Cavassini, Matthias; Buzzi, Marta; Decosterd, Laurent A.; Schmid, Patrick; Limacher, Andreas; Günthard, Huldrych F.; Metzner, Karin J.; Calmy, Alexandra (2022). Role of the HIV-1 Reservoir to Maintain Viral Suppression in a Simplified Strategy for the Long-Term Management of HIV-1 Infection (The SIMPL’HIV Trial). Frontiers in Virology, 2, p. 855437. Frontiers 10.3389/fviro.2022.855437

Balakrishna, Suraj; Wolfensberger, Aline; Kachalov, Viacheslav; Roth, Jan A; Kusejko, Katharina; Scherrer, Alexandra U; Furrer, Hansjakob; Hauser, Christoph; Calmy, Alexandra; Cavassini, Matthias; Schmid, Patrick; Bernasconi, Enos; Battegay, Manuel; Günthard, Huldrych F; Kouyos, Roger D (2022). Decreasing incidence and determinants of Bacterial Pneumonia in people with HIV: The Swiss HIV Cohort Study. The journal of infectious diseases, 225(9), pp. 1592-1600. Oxford University Press 10.1093/infdis/jiab573

Schoepf, Isabella C; Thorball, Christian W; Ledergerber, Bruno; Kootstra, Neeltje A; Reiss, Peter; Raffenberg, Marieke; Engel, Tanja; Braun, Dominique L; Hasse, Barbara; Thurnheer, Christine; Marzolini, Catia; Seneghini, Marco; Bernasconi, Enos; Cavassini, Matthias; Buvelot, Hélène; Arribas, José R; Kouyos, Roger D; Fellay, Jacques; Günthard, Huldrych F and Tarr, Philip E (2022). Telomere Length Declines In Persons Living With HIV Before Antiretroviral Therapy Start But Not After Viral Suppression: A Longitudinal Study Over >17 Years. The journal of infectious diseases, 225(9), pp. 1581-1591. Oxford University Press 10.1093/infdis/jiab603

Nguyen, Huyen; Hampel, Benjamin; Nuñez, David Garcia; Battegay, Manuel; Hachfeld, Anna; Bernasconi, Enos; Calmy, Alexandra; Cavassini, Matthias; Vernazza, Pietro; Fellay, Jacques; Rudolph, Hannes; Huber, Michael; Leuzinger, Karoline; Perreau, Matthieu; Scherrer, Alexandra; Ramette, Alban Nicolas; Yerly, Sabine; Günthard, Huldrych F; Kouyos, Roger D and Kusejko, Katharina (2022). Identifying and Characterizing Trans women in the Swiss HIV Cohort Study as an Epidemiologically Distinct Risk Group. Clinical infectious diseases, 74(8), pp. 1468-1475. Oxford University Press 10.1093/cid/ciab628

Scherrer, Alexandra U; Traytel, Anna; Braun, Dominique L; Calmy, Alexandra; Battegay, Manuel; Cavassini, Matthias; Furrer, Hansjakob; Schmid, Patrick; Bernasconi, Enos; Stoeckle, Marcel; Kahlert, Christian; Trkola, Alexandra; Kouyos, Roger D; Tarr, Philip; Marzolini, Catia; Wandeler, Gilles; Fellay, Jacques; Bucher, Heiner; Yerly, Sabine; Suter, Franziska; ... (2022). Cohort Profile Update: The Swiss HIV Cohort Study (SHCS). International journal of epidemiology, 51(1), 33-34j. Oxford University Press 10.1093/ije/dyab141

Jakeman, Bernadette; Scherrer, Alexandra; Battegay, Manuel; Gunthard, Huldrych F; Hachfeld, Anna; Calmy, Alexandra; Schmid, Patrick; Bernasconi, Enos; Cavassini, Matthias; Marzolini, Catia (2022). Anticholinergic medication use in elderly people living with HIV and self-reported neurocognitive impairment: a prospective cohort study. The journal of antimicrobial chemotherapy, 77(2), pp. 492-499. Oxford University Press 10.1093/jac/dkab386

Duran Ramirez, Jessy J; Ballouz, Tala; Nguyen, Huyen; Kusejko, Katharina; Chaudron, Sandra E; Huber, Michael; Hirsch, Hans H; Perreau, Matthieu; Ramette, Alban; Yerly, Sabine; Cavassini, Matthias; Stöckle, Marcel; Furrer, Hansjakob; Vernazza, Pietro; Bernasconi, Enos; Günthard, Huldrych F; Kouyos, Roger D (2022). Increasing Frequency and Transmission of HIV-1 Non-B Subtypes among Men Who Have Sex with Men in the Swiss HIV Cohort Study. The journal of infectious diseases, 225(2), pp. 306-316. Oxford University Press 10.1093/infdis/jiab360

Bick, Alexander G; Popadin, Konstantin; Thorball, Christian W; Uddin, Md Mesbah; Zanni, Markella V; Yu, Bing; Cavassini, Matthias; Rauch, Andri; Tarr, Philip; Schmid, Patrick; Bernasconi, Enos; Günthard, Huldrych F; Libby, Peter; Boerwinkle, Eric; McLaren, Paul J; Ballantyne, Christie M; Grinspoon, Steven; Natarajan, Pradeep; Fellay, Jacques (2022). Increased prevalence of clonal hematopoiesis of indeterminate potential amongst people living with HIV. Scientific reports, 12(1), p. 577. Springer Nature 10.1038/s41598-021-04308-2

Bandiera, Carole; Pasquier, Jérôme; Locatelli, Isabella; Niquille, Anne; Wuerzner, Grégoire; Dotta-Celio, Jennifer; Hachfeld, Anna; Wandeler, Gilles; Wagner, Anna Dorothea; Csajka, Chantal; Zanchi, Anne; Cavassini, Matthias; Schneider, Marie P (2022). Medication Adherence Evaluated Through Electronic Monitors During the 2020 COVID-19 Pandemic Lockdown in Switzerland: A Longitudinal Analysis. Patient preference and adherence, 16, pp. 2313-2320. Dovepress 10.2147/PPA.S377780

Begré, Lorin; Béguelin, Charles; Boyd, Anders; Peters, Lars; Rockstroh, Jürgen; Günthard, Huldrych F; Bernasconi, Enos; Cavassini, Matthias; Lacombe, Karine; Mocroft, Amanda; Wandeler, Gilles; Rauch, Andri (2022). Long-term trends of alanine aminotransferase levels among persons living with human immunodeficiency virus/hepatitis B virus with and without hepatitis delta coinfection. Frontiers in medicine, 9, p. 988356. Frontiers 10.3389/fmed.2022.988356

Damas, José; Ledergerber, Bruno; Nadin, Isaure; Tarr, Philip E; Stoeckle, Marcel; Kunze, Ursi; Hauser, Christoph; Gutbrod, Klemens; Calmy, Alexandra; Assal, Frédéric; Schmid, Patrick; Hundsberger, Thomas; di Benedetto, Caroline; Rossi, Stefania; Hasse, Barbara; Schlosser, Ladina; Pasquier, Renaud du; Darling, Katharine E A; Cavassini, Matthias (2021). Neurocognitive course at two-year follow-up in the neurocognitive assessment in the metabolic and aging cohort (NAMACO) study. AIDS, 35(15), pp. 2469-2480. Wolters Kluwer Health 10.1097/QAD.0000000000003057

Schoepf, Isabella C; Thorball, Christian W; Ledergerber, Bruno; Engel, Tanja; Raffenberg, Marieke; Kootstra, Neeltje A; Reiss, Peter; Hasse, Barbara; Marzolini, Catia; Thurnheer, Christine; Seneghini, Marco; Bernasconi, Enos; Cavassini, Matthias; Buvelot, Hélène; Kouyos, Roger; Günthard, Huldrych F; Fellay, Jacques; Tarr, Philip E (2021). Coronary Artery Disease–Associated and Longevity-Associated Polygenic Risk Scores for Prediction of Coronary Artery Disease Events in Persons Living With Human Immunodeficiency Virus: The Swiss HIV Cohort Study. Clinical infectious diseases, 73(9), pp. 1597-1604. The University of Chicago Press 10.1093/cid/ciab521

Courlet, Perrine; Barbieux, Charlotte; Sculier, Delphine; Wandeler, Gilles; Stoeckle, Marcel; Bernasconi, Enos; Braun, Dominique; Vernazza, Pietro; Cavassini, Matthias; Marinosci, Annalisa; Smit, Mikaela; Günthard, Huldrych F; Schmid, Patrick; Limacher, Andreas; Guidi, Monia; Alves Saldanha, Susana; Decosterd, Laurent Arthur; Calmy, Alexandra (2021). Pharmacokinetic parameters and weight change in HIV patients newly switched to dolutegravir-based regimens in SIMPL'HIV clinical trial. British journal of clinical pharmacology, 87(11), pp. 4455-4460. Wiley-Blackwell 10.1111/bcp.14832

Speich, Benjamin; Chammartin, Frédérique; Smith, Daniel; Stoeckle, Marcel P; Amico, Patrizia; Eichenberger, Anna L; Hasse, Barbara; Schuurmans, Macé M; Müller, Thomas; Tamm, Michael; Dickenmann, Michael; Abela, Irene A; Trkola, Alexandra; Hirsch, Hans H; Manuel, Oriol; Cavassini, Matthias; Hemkens, Lars G; Briel, Matthias; Mueller, Nicolas J; Rauch, Andri; ... (2021). A trial platform to assess approved SARS-CoV-2 vaccines in immunocompromised patients: first sub-protocol for a pilot trial comparing the mRNA vaccines Comirnaty® and COVID-19 mRNA Vaccine Moderna®. Trials, 22(1), p. 724. BioMed Central 10.1186/s13063-021-05664-0

Roth, Jan A; Radevski, Gorjan; Marzolini, Catia; Rauch, Andri; Günthard, Huldrych F; Kouyos, Roger D; Fux, Christoph A; Scherrer, Alexandra U; Calmy, Alexandra; Cavassini, Matthias; Kahlert, Christian R; Bernasconi, Enos; Bogojeska, Jasmina; Battegay, Manuel (2021). Cohort-derived machine learning models for individual prediction of chronic kidney disease in people living with HIV: a prospective multicentre cohort study. The journal of infectious diseases, 224(7), pp. 1198-1208. Oxford University Press 10.1093/infdis/jiaa236

Pyngottu, Ashima; Scherrer, Alexandra U; Kouyos, Roger; Huber, Michael; Hirsch, Hans; Perreau, Matthieu; Yerly, Sabine; Calmy, Alexandra; Cavassini, Matthias; Stöckle, Marcel; Furrer, Hansjakob; Vernazza, Pietro; Bernasconi, Enos; Günthard, Huldrych F (2021). Predictors of virological failure and time to viral suppression of first line integrase inhibitor based antiretroviral treatment. Clinical infectious diseases, 73(7), e2134-e2141. Oxford University Press 10.1093/cid/ciaa1614

Salazar-Vizcaya, Luisa; Balakrishna, Suraj; Schmidt, Axel J; Kachalov, Viacheslav; Kusejko, Katharina; Thurnheer, Maria Christine; Roth, Jan A; Nicca, Dunja; Cavassini, Matthias; Battegay, Manuel; Schmid, Patrick; Bernasconi, Enos; Günthard, Huldrych F; Rauch, Andri; Kouyos, Roger D (2021). Assessing the drivers of syphilis among men who have sex with men in Switzerland reveals a key impact of screening frequency: A modelling study. PLoS computational biology, 17(10), e1009529. Public Library of Science 10.1371/journal.pcbi.1009529

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Cusini, Alexia; Vernazza, Pietro L.; Yerly, Sabine; Decosterd, Laurent A.; Ledergerber, Bruno; Fux, Christoph A.; Rohrbach, Janine; Widmer, Nicolas; Hirschel, Bernhard; Gaudenz, Roman; Cavassini, Matthias; Klimkait, Thomas; Zenger, Franziska; Gutmann, Chistine; Opravil, Milos; Günthard, Huldyrich F. (2013). Higher CNS Penetration-Effectiveness of Long-term Combination Antiretroviral Therapy Is Associated With Better HIV-1 Viral Suppression in Cerebrospinal Fluid. JAIDS-JOURNAL OF ACQUIRED IMMUNE DEFICIENCY SYNDROMES, 62(1), pp. 28-35. Lippincott Williams & Wilkins 10.1097/QAI.0b013e318274e2b0

Lubomirov, Rubin; Arab-Alameddine, Mona; Rotger, Margalida; Fayet-Mello, Aurélie; Martinez, Raquel; Guidi, Monia; di Iulio, Julia; Cavassini, Matthias; Günthard, Huldrych F.; Furrer, Hansjakob; Marzolini, Catia; Bernasconi, Enos; Calmy, Alexandra; Buclin, Thierry; Decosterd, Laurent A.; Csajka, Chantal; Telenti, Amalio (2013). Pharmacogenetics-based population pharmacokinetic analysis of etravirine in HIV-1 infected individuals. Pharmacogenetics and genomics, 23(1), pp. 9-18. Lippincott Williams & Wilkins 10.1097/FPC.0b013e32835ade82

Du Pasquier, Renaud A.; Jilek, Samantha; Kalubi, Malela; Yerly, Sabine; Fux, Christoph A.; Gutmann, Christine; Cusini, Alexia; Günthard, Huldrych F.; Cavassini, Matthias; Vernazza, Pietro L. (2013). Marked increase of the astrocytic marker S100B in the cerebrospinal fluid of HIV-infected patients on LPV/r-monotherapy. AIDS, 27(2), pp. 203-210. Lippincott Williams & Wilkins 10.1097/QAD.0b013e32835a9a4a

Wandeler, Gilles; Gsponer, Thomas; Bihl, Florian; Bernasconi, Enos; Cavassini, Matthias; Kovari, Helen; Schmid, Patrick; Battegay, Manuel; Calmy, Alexandra; Egger, Matthias; Furrer, Hansjakob; Rauch, Andri (2013). Hepatitis B virus infection is associated with impaired immunological recovery during antiretroviral therapy in the Swiss HIV cohort study. Journal of infectious diseases, 208(9), pp. 1454-1458. Cary, N.C.: Oxford University Press 10.1093/infdis/jit351

Rohrbach, Janine; Stickel, Felix; Schmid, Patrick; Thormann, Wolfgang; Kovari, Helen; Scherrer, Alexandra; Günthard, Huldrych F.; Vuichard, Danielle; Cavassini, Matthias; Ambrosioni, Juan; Bernasconi, Enos; Furrer, Hansjakob; Rauch, Andri; Swiss HIV Cohort Study, The (2013). Changes in biomarkers of liver disease during successful combination antiretroviral therapy in HIV/HCV-coinfected individuals. Antiviral therapy, 19(2), pp. 149-159. International Medical Press 10.3851/IMP2686

Fenner, Lukas; Gagneux, Sebastien; Janssens, Jean-Paul; Fehr, Jan; Cavassini, Matthias; Hoffmann, Matthias; Bernasconi, Enos; Schrenzel, Jacques; Bodmer, Thomas; Böttger, Erik C; Helbling, Peter; Egger, Matthias; for the Swiss HIV Cohort and Molecular Epidemiology of Tuberculo, (2012). Tuberculosis in HIV-Negative and HIV-Infected Patients in a Low-Incidence Country: Clinical Characteristics and Treatment Outcomes. PLoS ONE, 7(3), e34186. Lawrence, Kans.: Public Library of Science 10.1371/journal.pone.0034186

Keiser, Olivia; Spycher, Ben; Rauch, Andri; Calmy, Alexandra; Cavassini, Matthias; Glass, Tracy R; Nicca, Dunja; Ledergerber, Bruno; Egger, Matthias; Swiss HIV, Cohort Study (2012). Outcomes of antiretroviral therapy in the Swiss HIV Cohort Study: latent class analysis. AIDS and behavior, 16(2), pp. 245-55. New York, N.Y.: Springer 10.1007/s10461-011-9971-5

Staehelin, Cornelia; Keiser, Olivia; Calmy, Alexandra; Weber, Rainer; Elzi, Luigia; Cavassini, Matthias; Schmid, Patrick; Bernasconi, Enos; Furrer, Hansjakob; Swiss HIV Cohort Study, (2012). Longer term clinical and virological outcome of sub-Saharan African participants on antiretroviral treatment in the Swiss HIV Cohort Study. Journal of acquired immune deficiency syndromes JAIDS, 59(1), pp. 79-85. Philadelphia, Pa.: Lippincott Williams & Wilkins 10.1097/QAI.0b013e318236be70

von Wyl, Viktor; Yerly, Sabine; Böni, Jürg; Shah, Cyril; Cellerai, Cristina; Klimkait, Thomas; Battegay, Manuel; Bernasconi, Enos; Cavassini, Matthias; Furrer, Hansjakob; Hirschel, Bernard; Vernazza, Pietro L; Ledergerber, Bruno; Günthard, Huldrych F; Swiss HIV Cohort, Study (2012). Incidence of HIV-1 drug resistance among antiretroviral treatment-naive individuals starting modern therapy combinations. Clinical infectious diseases, 54(1), pp. 131-40. Cary, N.C.: Oxford University Press 10.1093/cid/cir728

Wang, Qing; Young, Jim; Bernasconi, Enos; Cavassini, Matthias; Vernazza, Pietro; Hirschel, Bernard; Weber, Rainer; Furrer, Hansjakob; Stoeckle, Marcel; Bucher, Heiner C; Fux, Christoph Andreas; Swiss HIV, Cohort Study (2012). The prevalence of erectile dysfunction and its association with antiretroviral therapy in HIV-infected men: the Swiss HIV Cohort Study. Antiviral therapy, 18(3), pp. 337-344. London: International Medical Press 10.3851/IMP2372

Scherrer, Alexandra U.; Böni, Jürg; Yerly, Sabine; Klimkait, Thomas; Aubert, Vincent; Furrer, Hansjakob; Calmy, Alexandra; Cavassini, Matthias; Elzi, Luigia; Vernazza, Pietro L.; Bernasconi, Enos; Ledergerber, Bruno; Günthard, Huldrych F.; Swiss HIV Cohort Study (SHCS), (2012). Long-lasting protection of activity of nucleoside reverse transcriptase inhibitors and protease inhibitors (PIs) by boosted PI containing regimens. PLoS ONE, 7(11), e50307. Lawrence, Kans.: Public Library of Science 10.1371/journal.pone.0050307

Elzi, Luigia; Erb, Stefan; Furrer, Hansjakob; Ledergerber, Bruno; Cavassini, Matthias; Hirschel, Bernard; Vernazza, Pietro; Bernasconi, Enos; Weber, Rainer; Battegay, Manuel; Swiss HIV Cohort Study, (2012). Choice of Initial Combination Antiretroviral Therapy in Individuals With HIV Infection: Determinants and Outcomes. Archives of internal medicine, 172(17), pp. 1313-21. Chicago, Ill.: American Medical Association 10.1001/archinternmed.2012.3216

Scherrer, Alexandra U.; Ledergerber, Bruno; von Wyl, Viktor; Böni, Jürg; Yerly, Sabine; Klimkait, Thomas; Cellerai, Cristina; Furrer, Hansjakob; Calmy, Alexandra; Cavassini, Matthias; Elzi, Luigia; Vernazza, Pietro L.; Bernasconi, Enos; Günthard, Huldrych F.; Swiss HIV Cohort Study, (2012). Minor protease inhibitor mutations at baseline do not increase the risk for a virological failure in HIV-1 subtype B infected patients. PLoS ONE, 7(6), e37983. Lawrence, Kans.: Public Library of Science 10.1371/journal.pone.0037983

Young, Jim; Schäfer, Juliane; Fux, Christoph A; Furrer, Hansjakob; Bernasconi, Enos; Vernazza, Pietro; Calmy, Alexandra; Cavassini, Matthias; Weber, Rainer; Battegay, Manuel; Bucher, Heiner C; Swiss HIV Cohort Study, (2012). Renal function in patients with HIV starting therapy with tenofovir and either efavirenz, lopinavir or atazanavir. AIDS, 26(5), pp. 567-75. Hagerstown, Md.: Lippincott Williams & Wilkins 10.1097/QAD.0b013e32834f337c

Lubomirov, Rubin; Colombo, Sara; di Iulio, Julia; Ledergerber, Bruno; Martinez, Raquel; Cavassini, Matthias; Hirschel, Bernard; Bernasconi, Enos; Elzi, Luigia; Vernazza, Pietro; Furrer, Hansjakob; Günthard, Huldrych F; Telenti, Amalio; Swiss HIV Cohort Study, (2011). Association of pharmacogenetic markers with premature discontinuation of first-line anti-HIV therapy: an observational cohort study. Journal of infectious diseases, 203(2), pp. 246-57. Cary, N.C.: Oxford University Press 10.1093/infdis/jiq043

von Wyl, Viktor; Kouyos, Roger D; Yerly, Sabine; Böni, Jürg; Shah, Cyril; Bürgisser, Philippe; Klimkait, Thomas; Weber, Rainer; Hirschel, Bernard; Cavassini, Matthias; Staehelin, Cornelia; Battegay, Manuel; Vernazza, Pietro L; Bernasconi, Enos; Ledergerber, Bruno; Bonhoeffer, Sebastian; Günthard, Huldrych F; Swiss HIV Cohort Study, (2011). The role of migration and domestic transmission in the spread of HIV-1 non-B subtypes in Switzerland. Journal of infectious diseases, 204(7), pp. 1095-103. Cary, N.C.: Oxford University Press 10.1093/infdis/jir491

Elzi, Luigia; Steffen, Ingrid; Furrer, Hansjakob; Fehr, Jan; Cavassini, Matthias; Hirschel, Bernard; Hoffmann, Matthias; Bernasconi, Enos; Bassetti, Stefano; Battegay, Manuel (2011). Improved sensitivity of an interferon-gamma release assay (T-SPOT.TB™) in combination with tuberculin skin test for the diagnosis of latent tuberculosis in the presence of HIV co-infection. BMC infectious diseases, 11, p. 319. London: BioMed Central 10.1186/1471-2334-11-319

Hasse, Barbara; Ledergerber, Bruno; Furrer, Hansjakob; Battegay, Manuel; Hirschel, Bernhard; Cavassini, Matthias; Bertisch, Barbara; Bernasconi, Enos; Weber, Rainer; Swiss HIV Cohort, Study (2011). Morbidity and aging in HIV-infected persons: the Swiss HIV cohort study. Clinical infectious diseases, 53(11), pp. 1130-9. Cary, N.C.: Oxford University Press 10.1093/cid/cir626

Marzolini, Catia; Back, David; Weber, Rainer; Furrer, Hansjakob; Cavassini, Matthias; Calmy, Alexandra; Vernazza, Pietro; Bernasconi, Enos; Khoo, Saye; Battegay, Manuel; Elzi, Luigia; Swiss HIV Cohort Study, Members (2011). Ageing with HIV: medication use and risk for potential drug-drug interactions. Journal of antimicrobial chemotherapy, 66(9), pp. 2107-11. Oxford: Oxford University Press 10.1093/jac/dkr248

Ortiz, Millán; Poloni, Estella S; Furrer, Hansjakob; Kovari, Helen; Martinez, Raquel; Arnedo, Mireia; Elzi, Luigia; Bernasconi, Enos; Vernazza, Pietro; Hirschel, Bernard; Cavassini, Matthias; Ledergerber, Bruno; Günthard, Huldrych F; Telenti, Amalio; Tarr, Philip E; Swiss HIV Cohort Study, (2011). No longitudinal mitochondrial DNA sequence changes in HIV-infected individuals with and without lipoatrophy. Journal of infectious diseases, 203(5), pp. 620-4. Cary, N.C.: Oxford University Press 10.1093/infdis/jiq106

Wyl, Viktor von; Gianella, Sara; Fischer, Marek; Niederoest, Barbara; Kuster, Herbert; Battegay, Manuel; Bernasconi, Enos; Cavassini, Matthias; Rauch, Andri; Hirschel, Bernard; Vernazza, Pietro; Weber, Rainer; Joos, Beda; Günthard, Huldrych F; Swiss HIV Cohort Study-SHCS, (2011). Early antiretroviral therapy during primary HIV-1 infection results in a transient reduction of the viral setpoint upon treatment interruption. PLoS ONE, 6(11), e27463. Lawrence, Kans.: Public Library of Science 10.1371/journal.pone.0027463

Scherrer, Alexandra U; Ledergerber, Bruno; von Wyl, Viktor; Böni, Jürg; Yerly, Sabine; Klimkait, Thomas; Bürgisser, Philippe; Rauch, Andri; Hirschel, Bernard; Cavassini, Matthias; Elzi, Luigia; Vernazza, Pietro L; Bernasconi, Enos; Held, Leonhard; Günthard, Huldrych F; Swiss HIV Cohort, Study (2011). Improved virological outcome in White patients infected with HIV-1 non-B subtypes compared to subtype B. Clinical infectious diseases, 53(11), pp. 1143-52. Cary, N.C.: Oxford University Press 10.1093/cid/cir669

Boillat Blanco, Noémie; Probst, Arnold; Da Costa, Vreneli Waelti; Giulieri, Stefano; Bernasconi, Enos; Calmy, Alexandra; Elzi, Luigia; Rauch, Andri; Weber, Rainer; Bertisch, Barbara; Cavassini, Matthias; Bochud, Pierre-Yves (2011). Impact of a nurse vaccination program on hepatitis B immunity in a Swiss HIV clinic. Journal of acquired immune deficiency syndromes JAIDS, 58(5), pp. 472-4. Philadelphia, Pa.: Lippincott Williams & Wilkins 10.1097/QAI.0b013e318237915e

Gianella, Sara; von Wyl, Viktor; Fischer, Marek; Niederoest, Barbara; Battegay, Manuel; Bernasconi, Enos; Cavassini, Matthias; Rauch, Andri; Hirschel, Bernard; Vernazza, Pietro; Weber, Rainer; Joos, Beda; Günthard, Huldrych F; Swiss HIV Cohort Study, (2011). Effect of early antiretroviral therapy during primary HIV-1 infection on cell-associated HIV-1 DNA and plasma HIV-1 RNA. Antiviral therapy, 16(4), pp. 535-45. London: International Medical Press 10.3851/IMP1776

Nguyen, Alain; Calmy, Alexandra; Delhumeau, Cecile; Mercier, Isabelle; Cavassini, Matthias; Mello, Aurelie F; Elzi, Luigia; Rauch, Andri; Bernasconi, Enos; Schmid, Patrick; Hirschel, Bernard (2011). A randomized cross-over study to compare raltegravir and efavirenz (SWITCH-ER study). AIDS, 25(12), pp. 1481-7. Hagerstown, Md.: Lippincott Williams & Wilkins 10.1097/QAD.0b013e328348dab0

Kouyos, Roger D; von Wyl, Viktor; Yerly, Sabine; Böni, Jürg; Rieder, Philip; Joos, Beda; Taffé, Patrick; Shah, Cyril; Bürgisser, Philippe; Klimkait, Thomas; Weber, Rainer; Hirschel, Bernard; Cavassini, Matthias; Rauch, Andri; Battegay, Manuel; Vernazza, Pietro L; Bernasconi, Enos; Ledergerber, Bruno; Bonhoeffer, Sebastian; Günthard, Huldrych F; ... (2011). Ambiguous nucleotide calls from population-based sequencing of HIV-1 are a marker for viral diversity and the age of infection. Clinical infectious diseases, 52(4), pp. 532-9. Cary, N.C.: Oxford University Press 10.1093/cid/ciq164

Nguyen, Alain; Calmy, Alexandra; Delhumeau, Cécile; Mercier, Isabelle K; Cavassini, Matthias; Fayet-Mello, Aurélie; Elzi, Luigia; Genné, Daniel; Rauch, Andri; Bernasconi, Enos; Hirschel, Bernard; Swiss HIV Cohort Study, (2011). A randomized crossover study to compare efavirenz and etravirine treatment. AIDS, 25(1), pp. 57-63. Hagerstown, Md.: Lippincott Williams & Wilkins 10.1097/QAD.0b013e32833f9f63

Scherrer, Alexandra U; von Wyl, Viktor; Böni, Jürg; Yerly, Sabine; Klimkait, Thomas; Bürgisser, Philippe; Garzoni, Christian; Hirschel, Bernard; Cavassini, Matthias; Battegay, Manuel; Vernazza, Pietro L; Bernasconi, Enos; Ledergerber, Bruno; Günthard, Huldrych F; Swiss HIV Cohort Study (SHCS), (2011). Viral suppression rates in salvage treatment with raltegravir improved with the administration of genotypic partially active or inactive nucleoside/tide reverse transcriptase inhibitors. Journal of acquired immune deficiency syndromes JAIDS, 57(1), pp. 24-31. Philadelphia, Pa.: Lippincott Williams & Wilkins 10.1097/QAI.0b013e318211925e

Fehr, Jan; Glass, Tracy R; Louvel, Séverine; Hamy, François; Hirsch, Hans H; von Wyl, Viktor; Böni, Jürg; Yerly, Sabine; Bürgisser, Philippe; Cavassini, Matthias; Fux, Christoph A; Hirschel, Bernard; Vernazza, Pietro; Martinetti, Gladys; Bernasconi, Enos; Günthard, Huldrych F; Battegay, Manuel; Bucher, Heiner C; Klimkait, Thomas and Swiss HIV Cohort Study, (2011). Replicative phenotyping adds value to genotypic resistance testing in heavily pre-treated HIV-infected individuals--the Swiss HIV Cohort Study. Journal of translational medicine, 9, p. 14. London: BioMed Central 10.1186/1479-5876-9-14

Rotger, Margalida; Gsponer, Thomas; Martinez, Raquel; Taffé, Patrick; Elzi, Luigia; Vernazza, Pietro; Cavassini, Matthias; Bernasconi, Enos; Hirschel, Bernard; Furrer, Hansjakob; Weber, Rainer; Ledergerber, Bruno; Egger, Matthias; Telenti, Amalio; Tarr, Philip E (2010). Impact of single nucleotide polymorphisms and of clinical risk factors on new-onset diabetes mellitus in HIV-infected individuals. Clinical infectious diseases, 51(9), pp. 1090-1098. Cary, N.C.: The University of Chicago Press 10.1086/656630

Thurnheer, Maria Christine; Weber, Rainer; Toutous-Trellu, Laurence; Cavassini, Matthias; Elzi, Luigia; Schmid, Patrick; Bernasconi, Enos; Christen, Anna B; Zwahlen, Marcel; Furrer, Hansjakob (2010). Occurrence, risk factors, diagnosis and treatment of syphilis in the prospective observational Swiss HIV Cohort Study. AIDS, 24(12), pp. 1907-1916. Hagerstown, Md.: Lippincott Williams & Wilkins 10.1097/QAD.0b013e32833bfe21

Hasse, Barbara; Ledergerber, Bruno; Hirschel, Bernard; Vernazza, Pietro; Glass, Tracy R; Jeannin, Andre; Evison, John-Marc; Elzi, Luigia; Cavassini, Matthias; Bernasconi, Enos; Nicca, Dunja; Weber, Rainer; Swiss HIV Cohort, Study (2010). Frequency and determinants of unprotected sex among HIV-infected persons: the Swiss HIV cohort study. Clinical infectious diseases, 51(11), pp. 1314-22. Cary, N.C.: The University of Chicago Press 10.1086/656809

Marzolini, Catia; Elzi, Luigia; Gibbons, Sara; Weber, Rainer; Fux, Christoph; Furrer, Hansjakob; Chave, Jean-Philippe; Cavassini, Matthias; Bernasconi, Enos; Calmy, Alexandra; Vernazza, Pietro; Khoo, Saye; Ledergerber, Bruno; Back, David; Battegay, Manuel; Swiss HIV Cohort Study, (2010). Prevalence of comedications and effect of potential drug-drug interactions in the Swiss HIV Cohort Study. Antiviral therapy, 15(3), pp. 413-23. London: International Medical Press 10.3851/IMP1540

Kouyos, Roger D; von Wyl, Viktor; Yerly, Sabine; Böni, Jürg; Taffé, Patrick; Shah, Cyril; Bürgisser, Philippe; Klimkait, Thomas; Weber, Rainer; Hirschel, Bernard; Cavassini, Matthias; Furrer, Hansjakob; Battegay, Manuel; Vernazza, Pietro L; Bernasconi, Enos; Rickenbach, Martin; Ledergerber, Bruno; Bonhoeffer, Sebastian; Günthard, Huldrych F (2010). Molecular epidemiology reveals long-term changes in HIV type 1 subtype B transmission in Switzerland. Journal of infectious diseases, 201(10), pp. 1488-97. Cary, N.C.: The University of Chicago Press 10.1086/651951

Lubomirov, Rubin; di Iulio, Julia; Fayet, Aurélie; Colombo, Sara; Martinez, Raquel; Marzolini, Catia; Furrer, Hansjakob; Vernazza, Pietro; Calmy, Alexandra; Cavassini, Matthias; Ledergerber, Bruno; Rentsch, Katharina; Descombes, Patrick; Buclin, Thierry; Decosterd, Laurent A; Csajka, Chantal; Telenti, Amalio; Swiss HIV Cohort Study, (2010). ADME pharmacogenetics: investigation of the pharmacokinetics of the antiretroviral agent lopinavir coformulated with ritonavir. Pharmacogenetics and genomics, 20(4), pp. 217-30. London: Lippincott Williams & Wilkins 10.1097/FPC.0b013e328336eee4

Elzi, Luigia; Marzolini, Catia; Furrer, Hansjakob; Ledergerber, Bruno; Cavassini, Matthias; Hirschel, Bernard; Vernazza, Pietro; Bernasconi, Enos; Weber, Rainer; Battegay, Manuel; Swiss HIV Cohort Study, (2010). Treatment modification in human immunodeficiency virus-infected individuals starting combination antiretroviral therapy between 2005 and 2008. Archives of internal medicine, 170(1), pp. 57-65. Chicago, Ill.: American Medical Association 10.1001/archinternmed.2009.432

Glass, Tracy R; Battegay, Manuel; Cavassini, Matthias; De Geest, Sabina; Furrer, Hansjakob; Vernazza, Pietro L; Hirschel, Bernard; Bernasconi, Enos; Rickenbach, Martin; Günthard, Huldrych F; Bucher, Heiner C; Swiss HIV Cohort Study, (2010). Longitudinal analysis of patterns and predictors of changes in self-reported adherence to antiretroviral therapy: Swiss HIV Cohort Study. Journal of acquired immune deficiency syndromes JAIDS, 54(2), pp. 197-203. Philadelphia, Pa.: Lippincott Williams & Wilkins 10.1097/QAI.0b013e3181ca48bf

Osih, Regina B; Taffé, Patrick; Rickenbach, Martin; Gayet-Ageron, Angèle; Elzi, Luigia; Fux, Christoph; Opravil, Milos; Bernasconi, Enos; Schmid, Patrick; Günthard, Huldrych F; Cavassini, Matthias; Swiss HIV Cohort Study, (2010). Outcomes of patients on dual-boosted PI regimens: experience of the Swiss HIV cohort study. AIDS research and human retroviruses, 26(11), pp. 1239-46. New York, N.Y.: Mary Ann Liebert 10.1089/aid.2010.0070

Gutmann, Christine; Cusini, Alexia; Günthard, Huldrych F; Fux, Christoph; Hirschel, Bernard; Decosterd, Laurent-Arthur; Cavassini, Matthias; Yerly, Sabine; Vernazza, Pietro L; Swiss HIV Cohort Study (SHCS), (2010). Randomized controlled study demonstrating failure of LPV/r monotherapy in HIV: the role of compartment and CD4-nadir. AIDS, 24(15), pp. 2347-54. Hagerstown, Md.: Lippincott Williams & Wilkins 10.1097/QAD.0b013e32833db9a1

Bucher, Heiner C; Rickenbach, Martin; Young, Jim; Glass, Tracy R; Vallet, Yannick; Bernasconi, Enos; Cavassini, Matthias; Fux, Christoph; Schiffer, Véronique; Vernazza, Pietro; Weber, Rainer; Battegay, Manuel; Swiss HIV Cohort Study, (2010). Randomized trial of a computerized coronary heart disease risk assessment tool in HIV-infected patients receiving combination antiretroviral therapy. Antiviral therapy, 15(1), pp. 31-40. London: International Medical Press 10.3851/IMP1475

Young, Jim; Bucher, Heiner C; Guenthard, Huldrych F; Rickenbach, Martin; Fux, Christoph A; Hirschel, Bernard; Cavassini, Matthias; Vernazza, Pietro; Bernasconi, Enos; Battegay, Manuel (2009). Virological and immunological responses to efavirenz or boosted lopinavir as first-line therapy for patients with HIV. Antiviral therapy, 14(6), pp. 771-9. London: International Medical Press 10.3851/IMP1291

Elzi, Luigia; Kaufmann, Gilbert; Weber, Rainer; Fux, Christoph A; Cavassini, Matthias; Hirschel, Bernard; Vernazza, Pietro; Bernasconi, Enos; Battegay, Manuel (2009). Discontinuation of enfuvirtide in heavily pretreated HIV-infected individuals. HIV clinical trials, 10(4), pp. 207-14. St. Louis, Mo.: Thomas Land Publishers 10.1310/hct1004-207

Khanna, Nina; Elzi, Luigia; Mueller, Nicolas J; Garzoni, Christian; Cavassini, Matthias; Fux, Christoph A; Vernazza, Pietro; Bernasconi, Enos; Battegay, Manuel; Hirsch, Hans H (2009). Incidence and outcome of progressive multifocal leukoencephalopathy over 20 years of the Swiss HIV Cohort Study. Clinical infectious diseases, 48(10), pp. 1459-66. Cary, N.C.: The University of Chicago Press 10.1086/598335

Rotger, Margalida; Bayard, Cornelia; Taffé, Patrick; Martinez, Raquel; Cavassini, Matthias; Bernasconi, Enos; Battegay, Manuel; Hirschel, Bernard; Furrer, Hansjakob; Witteck, Andrea; Weber, Rainer; Ledergerber, Bruno; Telenti, Amalio; Tarr, Philip E (2009). Contribution of genome-wide significant single-nucleotide polymorphisms and antiretroviral therapy to dyslipidemia in HIV-infected individuals: a longitudinal study. Circulation - cardiovascular genetics, 2(6), pp. 621-8. Hagerstown, Md.: Lippincott Williams & Wilkins 10.1161/CIRCGENETICS.109.874412

Ballif, Marie; Ledergerber, Bruno; Battegay, Manuel; Cavassini, Matthias; Bernasconi, Enos; Schmid, Patrick; Hirschel, Bernard; Furrer, Hansjakob; Rickenbach, Martin; Opravil, Milos; Weber, Rainer (2009). Impact of previous virological treatment failures and adherence on the outcome of antiretroviral therapy in 2007. PLoS ONE, 4(12), e8275. Lawrence, Kans.: Public Library of Science 10.1371/journal.pone.0008275

Conen, Anna; Fehr, Jan; Glass, Tracy R; Furrer, Hansjakob; Weber, Rainer; Vernazza, Pietro; Hirschel, Bernard; Cavassini, Matthias; Bernasconi, Enos; Bucher, Heiner C; Battegay, Manuel (2009). Self-reported alcohol consumption and its association with adherence and outcome of antiretroviral therapy in the Swiss HIV Cohort Study. Antiviral therapy, 14(3), pp. 349-57. London: International Medical Press

di Iulio, Julia; Fayet, Aurélie; Arab-Alameddine, Mona; Rotger, Margalida; Lubomirov, Rubin; Cavassini, Matthias; Furrer, Hansjakob; Günthard, Huldrych F; Colombo, Sara; Csajka, Chantal; Eap, Chin B; Decosterd, Laurent A; Telenti, Amalio (2009). In vivo analysis of efavirenz metabolism in individuals with impaired CYP2A6 function. Pharmacogenetics and genomics, 19(4), pp. 300-9. London: Lippincott Williams & Wilkins 10.1097/FPC.0b013e328328d577

von Wyl, Viktor; Yerly, Sabine; Bürgisser, Philippe; Klimkait, Thomas; Battegay, Manuel; Bernasconi, Enos; Cavassini, Matthias; Furrer, Hansjakob; Hirschel, Bernard; Vernazza, Pietro L; Francioli, Patrick; Bonhoeffer, Sebastian; Ledergerber, Bruno; Günthard Huldrych, F; Swiss HIV Cohort, Study (2009). Long-term trends of HIV type 1 drug resistance prevalence among antiretroviral treatment-experienced patients in Switzerland. Clinical infectious diseases, 48(7), pp. 979-87. Cary, N.C.: The University of Chicago Press 10.1086/597352

Veit, Olivia; Niedrig, Matthias; Chapuis-Taillard, Caroline; Cavassini, Matthias; Mossdorf, Erik; Schmid, Patrick; Bae, Hi-Gung; Litzba, Nadine; Staub, Thomas; Hatz, Christoph; Furrer, Hansjakob (2009). Immunogenicity and safety of yellow fever vaccination for 102 HIV-infected patients. Clinical infectious diseases, 48(5), pp. 659-66. Cary, N.C.: The University of Chicago Press 10.1086/597006

Dang, Thanh; Jaton-Ogay, Katia; Flepp, Markus; Kovari, Helen; Evison, John-Marc; Fehr, Jan; Schmid, Patrick; Boffi El Amari, Emmanuelle; Cavassini, Matthias; Odorico, Massimo; Tarr, Philip E; Greub, Gilbert (2009). High prevalence of anorectal chlamydial infection in HIV-infected men who have sex with men in Switzerland. Clinical infectious diseases, 49(10), pp. 1532-5. Cary, N.C.: The University of Chicago Press 10.1086/644740

Vo, Thi Tuyet Nhung; Ledergerber, Bruno; Keiser, Olivia; Hirschel, Bernard; Furrer, Hansjakob; Battegay, Manuel; Cavassini, Matthias; Bernasconi, Enos; Vernazza, Pietro; Weber, Rainer (2008). Durability and outcome of initial antiretroviral treatments received during 2000--2005 by patients in the Swiss HIV Cohort Study. Journal of infectious diseases, 197(12), pp. 1685-94. Cary, N.C.: The University of Chicago Press 10.1086/588141

Fux, Christoph A; Rauch, Andri; Simcock, Mathew; Bucher, Heiner C; Hirschel, Bernard; Opravil, Milos; Vernazza, Pietro; Cavassini, Matthias; Bernasconi, Enos; Elzi, Luigia; Furrer, Hansjakob (2008). Tenofovir use is associated with an increase in serum alkaline phosphatase in the Swiss HIV Cohort Study. Antiviral therapy, 13(8), pp. 1077-82. London: International Medical Press

Rauch, Andri; Nolan, David; Thurnheer, Christine; Fux, Christoph A; Cavassini, Matthias; Chave, Jean-Philippe; Opravil, Milos; Phillips, Elizabeth; Mallal, Simon; Furrer, Hansjakob (2008). Refining abacavir hypersensitivity diagnoses using a structured clinical assessment and genetic testing in the Swiss HIV Cohort Study. Antiviral therapy, 13(8), pp. 1019-28. London: International Medical Press

Khanna, Nina; Opravil, Milos; Furrer, Hansjakob; Cavassini, Matthias; Vernazza, Pietro; Bernasconi, Enos; Weber, Rainer; Hirschel, Bernard; Battegay, Manuel; Kaufmann, Gilbert R (2008). CD4+ T cell count recovery in HIV type 1-infected patients is independent of class of antiretroviral therapy. Clinical infectious diseases, 47(8), pp. 1093-101. Cary, N.C.: The University of Chicago Press 10.1086/592113

Rauch, Andri; Gaudieri, Silvana; Evison, John; Nolan, David; Cavassini, Matthias; Weber, Rainer; James, Ian; Furrer, Hansjakob (2008). Low current and nadir CD4+ T-cell counts are associated with higher hepatitis C virus RNA levels in the Swiss HIV cohort study. Antiviral therapy, 13(3), pp. 455-60. London: International Medical Press

von Wyl, Viktor; Yerly, Sabine; Böni, Jürg; Bürgisser, Philippe; Klimkait, Thomas; Battegay, Manuel; Bernasconi, Enos; Cavassini, Matthias; Furrer, Hansjakob; Hirschel, Bernard; Vernazza, Pietro L; Rickenbach, Martin; Ledergerber, Bruno; Günthard, Huldrych F (2008). Factors associated with the emergence of K65R in patients with HIV-1 infection treated with combination antiretroviral therapy containing tenofovir. Clinical infectious diseases, 46(8), pp. 1299-309. Cary, N.C.: The University of Chicago Press 10.1086/528863

El Amari, Emmanuelle Boffi; Toutous-Trellu, Laurence; Gayet-Ageron, Angèle; Baumann, Michele; Cathomas, Gieri; Steffen, Ingrid; Erb, Peter; Mueller, Nicolas J; Furrer, Hansjakob; Cavassini, Matthias; Vernazza, Pietro; Hirsch, Hans H; Bernasconi, Enos; Hirschel, Bernard (2008). Predicting the evolution of Kaposi sarcoma, in the highly active antiretroviral therapy era. AIDS, 22(9), pp. 1019-28. Hagerstown, Md.: Lippincott Williams & Wilkins

Glass, Tracy R; De Geest, Sabina; Weber, Rainer; Vernazza, Pietro L; Rickenbach, Martin; Furrer, Hansjakob; Bernasconi, Enos; Cavassini, Matthias; Hirschel, Bernard; Battegay, Manuel; Bucher, Heiner C (2006). Correlates of self-reported nonadherence to antiretroviral therapy in HIV-infected patients: the Swiss HIV Cohort Study. Journal of acquired immune deficiency syndromes JAIDS, 41(3), pp. 385-92. Philadelphia, Pa.: Lippincott Williams & Wilkins 10.1097/01.qai.0000186371.95301.52

Conference or Workshop Item

Gisler, Valentin; Kraus, David; Nemeth, Johannes; Lecompte, Marthe Than; Merz, Laurent; Stoeckle, Marcel; Schmid, Patrick; Bernasconi, Enos; Weber, Rainer; Cavassini, Matthias; Calmy, Alexandra; Elzi, Luigia; Furrer, Hansjakob (2 November 2014). AIDS defining opportunistic infections in patients with high CD4 counts in the combination antiretroviral therapy (cART) era: things ain't what they used to be. Journal of the International AIDS Society, 17(Suppl 3), p. 19621. BioMed Central 10.7448/IAS.17.4.19621

Aebi-Popp, Karoline; Kouyos, Roger; Bertisch, Barbara; Staehelin, Cornelia Johanna; Hoesli, Irene; Rickenbach, Martin; Thorne, Claire; Grawe, Claudia; Bernasconi, Enos; Cavassini, Matthias; de Tejada, Begona Martinez; Stoeckle, Marcel; Lecompte, Thanh; Rudin, Christoph; Fehr, Jan (2014). Loss to follow-up of HIV-infected women after delivery: The Swiss HIV Cohort Study and the Swiss Mother and Child HIV Cohort Study. Journal of the International AIDS Society, 17(4,Suppl3), p. 19535. BioMed Central 10.7448/IAS.17.4.19535

Working Paper

Bick, Alexander G; Popadin, Konstantin; Thorball, Christian W; Uddin, Md Mesbah; Zanni, Markella; Yu, Bing; Cavassini, Matthias; Rauch, Andri; Tarr, Philip; Schmid, Patrick; Bernasconi, Enos; Gunthard, Huldrych; Libby, Peter; Boerwinkle, Eric; McLaren, Paul; Ballantyne, Christie M; Grinspoon, Steven K; Natarajan, Pradeep; Fellay, Jacques (7 November 2020). Increased CHIP Prevalence Amongst People Living with HIV. (medRxiv). Cold Spring Harbor Laboratory 10.1101/2020.11.06.20225607

Dataset

Sculier, Delphine; Wandeler, Gilles; Yerly, Sabine; Marinosci, Annalisa; Stoeckle, Marcel; Bernasconi, Enos; Braun, Dominique L; Vernazza, Pietro; Cavassini, Matthias; Buzzi, Marta; Metzner, Karin J; Decosterd, Laurent; Günthard, Huldrych F; Schmid, Patrick; Limacher, Andreas; Egger, Matthias; Calmy, Alexandra; Swiss HIV, Cohort Study (2020). Efficacy and safety of dolutegravir plus emtricitabine versus standard ART for the maintenance of HIV-1 suppression: 48-week results of the factorial, randomized, non-inferiority SIMPL-HIV trial [Dataset]. University of Bern

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