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Carlé, Caroline; Boucher, Delphine; Morelli, Luisa; Larue, Camille; Ovtchinnikova, Ekaterina; Battut, Louise; Boumessid, Kawthar; Airaud, Melvin; Quaranta-Nicaise, Muriel; Ravanat, Jean-Luc; Dietrich, Gilles; Menard, Sandrine; Eberl, Gérard; Barnich, Nicolas; Mas, Emmanuel; Carriere, Marie; Al Nabhani, Ziad; Barreau, Frédérick (2024). Correction: Perinatal foodborne titanium dioxide exposure-mediated dysbiosis predisposes mice to develop colitis through life. Particle and fibre toxicology, 21(1) BioMed Central 10.1186/s12989-024-00570-0
Carlé, Caroline; Boucher, Delphine; Morelli, Luisa; Larue, Camille; Ovtchinnikova, Ekaterina; Battut, Louise; Boumessid, Kawthar; Airaud, Melvin; Quaranta-Nicaise, Muriel; Ravanat, Jean-Luc; Dietrich, Gilles; Menard, Sandrine; Eberl, Gérard; Barnich, Nicolas; Mas, Emmanuel; Carriere, Marie; Al Nabhani, Ziad; Barreau, Frédérick (2023). Perinatal foodborne titanium dioxide exposure-mediated dysbiosis predisposes mice to develop colitis through life. Particle and fibre toxicology, 20(1), p. 45. BioMed Central 10.1186/s12989-023-00555-5
Kallol, Sampada Arvindrao; Huang, Xiao; Müller, Stefan Jürg; Ontsouka, Edgar; Albrecht, Christiane (2018). Novel Insights into Concepts and Directionality of Maternal⁻Fetal Cholesterol Transfer across the Human Placenta. International journal of molecular sciences, 19(8) Molecular Diversity Preservation International MDPI 10.3390/ijms19082334
Juillerat, Pascal; Andrew, Peter Michael; Macpherson, James; Slack, Emma; Cahenzli, Julia; Seibold, Frank Werner; McCoy, Kathleen; Macpherson, Andrew (May 2014). CD62L (L-Selectin) Shedding for Assessment of Functional Blockade of TNF-Alpha in Anti-TNF treated Inflammatory Bowel Disease Patients: Clinical Feasibility and Perspectives. Gastroenterology, 146(5), p. 239. Elsevier
Juillerat, Pascal; Andrew, Peter Michael; Macpherson, J; Slack, Emma; Patuto, Nicola; Cahenzli, Julia; McCoy, Kathleen; Macpherson, Andrew (February 2014). CD62L (L-selectin) shedding for assessment of functional blockade of TNF alpha in anti-TNF treated IBD patients: clinical feasibility and perspectives (DOP060). Journal of Crohn's & Colitis, 8(Suppl1), pp. 43-44. Elsevier 10.1016/S1873-9946(14)60085-4
Juillerat, Pascal; Andrew, Peter Michael; Macpherson, James; Slack, Emma; Cahenzli, Julia; Seibold, F.; McCoy, Kathleen; Macpherson, Andrew (2014). CD62L (L-selectin) shedding for assessment of functional blockade of TNF alpha in anti-TNF treated IBD patients: clinical feasibility and perspectives. United european gastroenterology journal, 2(1suppl), A45-A46. Sage
Juillerat, Pascal; Andrew, Peter Michael; Macpherson, James; Slack, Emma; Cahenzli, Julia; Seibold, Frank Werner; McCoy, Kathleen; Macpherson, Andrew (2014). CD62L (L-Selectin) Shedding for Assessment of Functional Blockade of TNF-Alpha in Anti-TNF treated Inflammatory Bowel Disease Patients: Clinical Feasibility and Perspectives. Swiss medical weekly, 144(Suppl206), 3S-3S. EMH Schweizerischer Ärzteverlag
Mager, Lukas; Riether, Carsten; Schürch, Christian; Banz Wälti, Yara; Wasmer, Marie-Hélène Christin; Stuber Roos, Regula; Theocharides, Alexandre; Li, Xiaohong; Xia, Yu; Saito, Hirohisa; Nakae, Susumu; Baerlocher, Gabriela M.; Manz, Markus G; McCoy, Kathleen; Macpherson, Andrew; Ochsenbein, Adrian; Beutler, Bruce; Krebs, Philippe (2015). IL-33 signaling contributes to the pathogenesis of myeloproliferative neoplasms. Journal of clinical investigation, 125(7), pp. 2579-2591. American Society for Clinical Investigation 10.1172/JCI77347
Cecchini, Luca; Barmaz, Colette; Coloma Cea, Maria José; Baeschlin, Hannah; Etter, Julian; Netzer, Stefanie; Bregy, Leonie; Marchukov, Dmitrij; Fernandez Trigo, Nerea; Meier, Rachel; Hirschi, Jasmin; Wyss, Jacqueline; Wick, Andrina; Zingg, Joelle; Christensen, Sandro; Radan, Anda-Petronela; Etter, Annina; Müller, Martin; Kaess, Michael; Surbek, Daniel; ... (2023). The Bern Birth Cohort (BeBiCo) to study the development of the infant intestinal microbiota in a high-resource setting in Switzerland: rationale, design, and methods. BMC pediatrics, 23(1), p. 560. BioMed Central 10.1186/s12887-023-04198-5
Moor, Kathrin; Fadlallah, Jehane; Toska, Albulena; Sterlin, Delphine; Balmer, Maria Luisa; Macpherson, Andrew; Gorochov, Guy; Larsen, Martin; Slack, Emma (2016). Analysis of bacterial-surface-specific antibodies in body fluids using bacterial flow cytometry. Nature protocols, 11(8), pp. 1531-1553. Nature Publishing Group 10.1038/nprot.2016.091
Balmer, Maria Luisa; Ma, Eric H; Bantug, Glenn R; Grählert, Jasmin; Pfister, Simona; Glatter, Timo; Jauch, Annaïse; Dimeloe, Sarah; Slack, Emma; Dehio, Philippe; Krzyzaniak, Magdalena A; King, Carolyn G; Burgener, Anne-Valérie; Fischer, Marco; Develioglu, Leyla; Belle, Réka; Recher, Mike; Bonilla, Weldy V; Macpherson, Andrew; Hapfelmeier, Siegfried Hektor; ... (2016). Memory CD8(+) T Cells Require Increased Concentrations of Acetate Induced by Stress for Optimal Function. Immunity, 44(6), pp. 1312-1324. Cell Press 10.1016/j.immuni.2016.03.016
Martin, Juliette; Balmer, Maria Luisa; Rajendran, Saranya; Maurhofer, Olivier; Dufour, Jean-François; St-Pierre Dufour, Marie Vivien (2016). Nutritional stress exacerbates hepatic steatosis induced by deletion of the histidine nucleotide-binding (Hint2) mitochondrial protein. American journal of physiology - gastrointestinal and liver physiology, 310(7), G497-509. American Physiological Society 10.1152/ajpgi.00178.2015
Slack, Emma; Balmer, Maria Luisa; Macpherson, Andrew (2014). B cells as a critical node in the microbiota-host immune system network. Immunological reviews, 260(1), pp. 50-66. Wiley-Blackwell 10.1111/imr.12179
Balmer, Maria Luisa; Slack, Emma; De Gottardi, Andrea; Lawson, Melissa; Hapfelmeier, Siegfried Hektor; Miele, Luca; Grieco, Antonio; Van Vlierberghe, Hans; Fahrner, René; Patuto, Nicola; Bernsmeier, Christine; Ronchi, Francesca; Wyss, Madeleine; Keogh-Stroka, Deborah M.; Dickgreber, Nina; Heim, Markus H; McCoy, Kathy D; Macpherson, Andrew (2014). The liver may act as a firewall mediating mutualism between the host and its gut commensal microbiota. Science translational medicine, 6(237), 237ra66. American Association for the Advancement of Science 10.1126/scitranslmed.3008618
Balmer, Maria L.; Trueb, Beat; Zhuang, Lei; Slack, Emma; Beltraminelli, Helmut; Villiger, Peter Matthias (2013). Splicing defect of CD33 and inflammatory syndrome associated with occult bacterial infection. Journal of allergy and clinical immunology, 132(2), 490-493.e2. Mosby 10.1016/j.jaci.2013.03.027
Cahenzli, Julia; Balmer, Maria Luisa; McCoy, Kathleen (2012). Microbial-immune cross-talk and regulation of the immune system. Immunology, 138(1), pp. 12-22. Wiley-Blackwell 10.1111/j.1365-2567.2012.03624.x
Mager, Lukas; Riether, Carsten; Schürch, Christian; Banz Wälti, Yara; Wasmer, Marie-Hélène Christin; Stuber Roos, Regula; Theocharides, Alexandre; Li, Xiaohong; Xia, Yu; Saito, Hirohisa; Nakae, Susumu; Baerlocher, Gabriela M.; Manz, Markus G; McCoy, Kathleen; Macpherson, Andrew; Ochsenbein, Adrian; Beutler, Bruce; Krebs, Philippe (2015). IL-33 signaling contributes to the pathogenesis of myeloproliferative neoplasms. Journal of clinical investigation, 125(7), pp. 2579-2591. American Society for Clinical Investigation 10.1172/JCI77347
Cecchini, Luca; Barmaz, Colette; Coloma Cea, Maria José; Baeschlin, Hannah; Etter, Julian; Netzer, Stefanie; Bregy, Leonie; Marchukov, Dmitrij; Fernandez Trigo, Nerea; Meier, Rachel; Hirschi, Jasmin; Wyss, Jacqueline; Wick, Andrina; Zingg, Joelle; Christensen, Sandro; Radan, Anda-Petronela; Etter, Annina; Müller, Martin; Kaess, Michael; Surbek, Daniel; ... (2023). The Bern Birth Cohort (BeBiCo) to study the development of the infant intestinal microbiota in a high-resource setting in Switzerland: rationale, design, and methods. BMC pediatrics, 23(1), p. 560. BioMed Central 10.1186/s12887-023-04198-5
Fregolente, L.G.; Warncke, J.D.; van der Meer, J.; Schmidt, M.; Khatami, R.; Macpherson, A.J.; Yilmaz, B.; Bassetti, C.L.A. (2022). SPHYNCS: Gut microbiota composition is different in Narcolepsy type 1 and Narcolepsy Borderland. Sleep medicine, 100, S167. Elsevier 10.1016/j.sleep.2022.05.452
Jordi, Sebastian Bruno Ulrich; Lang, Brian Matthew; Wyss, Jacqueline; Auschra, Bianca; Yilmaz, Bahtiyar; Krupka, Niklas; Greuter, Thomas; Schreiner, Philipp; Biedermann, Luc; Preisig, Martin; von Känel, Roland; Rogler, Gerhard; Begré, Stefan; Misselwitz, Benjamin (2022). The personality traits activity, self-reproach, and negative affect jointly predict clinical recurrence, depressive symptoms, and low quality of life in inflammatory bowel disease patients. Journal of gastroenterology, 57(11), pp. 848-866. Springer 10.1007/s00535-022-01902-7
Jordi, Sebastian Bruno Ulrich; Botte, Federica; Lang, Brian Matthew; Greuter, Thomas; Krupka, Niklas; Auschra, Bianca; Schreiner, Philipp; Sulz, Michael Christian; Biedermann, Luc; von Känel, Roland; Rogler, Gerhard; Begré, Stefan; Misselwitz, Benjamin (2021). Type D personality is associated with depressive symptoms and clinical activity in inflammatory bowel disease. Alimentary pharmacology & therapeutics, 54(1), pp. 53-67. Wiley-Blackwell 10.1111/apt.16365
Ledergerber, Martina; Lang, Brian M; Heinrich, Henriette; Biedermann, Luc; Begré, Stefan; Zeitz, Jonas; Krupka, Niklas; Rickenbacher, Andreas; Turina, Matthias; Greuter, Thomas; Schreiner, Philipp; Roth, René; Siebenhüner, Alexander; Vavricka, Stephan R; Rogler, Gerhard; Beerenwinkel, Niko; Misselwitz, Benjamin (2021). Abdominal pain in patients with inflammatory bowel disease: association with single-nucleotide polymorphisms prevalent in irritable bowel syndrome and clinical management. BMC gastroenterology, 21(1), p. 53. BioMed Central 10.1186/s12876-021-01622-x
Humbel, Fabienne; Rieder Harrell, Jessica; Franc, Yannick; Juillerat, Pascal; Scharl, Michael; Misselwitz, Benjamin; Schreiner, Philipp; Begré, Stefan; Rogler, Gerhard; von Känel, Roland; Yilmaz, Bahtiyar; Biedermann, Luc (2020). Association of Alterations in Intestinal Microbiota With Impaired Psychological Function in Patients With Inflammatory Bowel Diseases in Remission. Clinical gastroenterology and hepatology, 18(9), 2019-2029.e11. Elsevier 10.1016/j.cgh.2019.09.022
Jakob, Manuel O; Spari, Daniel; Sánchez Taltavull, Daniel; Salm, Lilian; Yilmaz, Bahtiyar; Doucet Ladevèze, Rémi; Mooser, Catherine; Pereyra, David; Ouyang, Ye; Schmidt, Theresa; Mattiola, Irene; Starlinger, Patrick; Stroka, Deborah; Tschan, Franziska; Candinas, Daniel; Gasteiger, Georg; Klose, Christoph S N; Diefenbach, Andreas; Gomez de Agüero, Mercedes and Beldi, Guido (2023). ILC3s restrict the dissemination of intestinal bacteria to safeguard liver regeneration after surgery. Cell reports, 42(3), p. 112269. Cell Press 10.1016/j.celrep.2023.112269
Yilmaz, Bahtiyar; Fuhrer, Tobias; Morgenthaler, Deborah; Krupka, Niklas; Wang, Daoming; Spari, Daniel; Candinas, Daniel; Misselwitz, Benjamin; Beldi, Guido; Sauer, Uwe; Macpherson, Andrew J (2022). Plasticity of the adult human small intestinal stoma microbiota. Cell host & microbe, 30(12), 1773-1787.e6. Cell Press 10.1016/j.chom.2022.10.002
Sánchez-Taltavull, Daniel; Castelo-Székely, Violeta; Murugan, Shaira; Hamley, Jonathan I. D.; Rollenske, Tim; Ganal-Vonarburg, Stephanie C.; Büchi, Isabel; Keogh, Adrian; Li, Hai; Salm, Lilian; Spari, Daniel; Yilmaz, Bahtiyar; Zimmermann, Jakob; Gerfin, Michael; Roldan, Edgar; Beldi, Guido (2021). Regular testing of asymptomatic healthcare workers identifies cost-efficient SARS-CoV-2 preventive measures. PLoS ONE, 16(11), e0258700. Public Library of Science 10.1371/journal.pone.0258700
Jakob, Manuel O.; Sánchez-Taltavull, Daniel; Yilmaz, Bahtiyar; Malinka, Thomas; Mooser, Catherine; Spari, Daniel; Salm, Lilian A.; Freiburghaus, Katrin; Pereyra, David; Hapfelmeier, Siegfried; Masoodi, Mojgan; Starlinger, Patrick; Stroka, Deborah; Tschan, Franziska; Candinas, Daniel; Gomez de Agüero, Mercedes; Beldi, Guido (19 September 2019). Compartmentalization of intestinal bacteria by hepatic ILC3s prevents infections after surgery (bioRxiv). Cold Spring Harbor Laboratory 10.1101/773150
Kudira, Ramesh; Malinka, Thomas; Kohler, Andreas; Dosch, Michel; Gomez de Agüero Tamargo, Maria de la Mercedes; Melin, Nicolas; Haegele, S; Starlinger, P; Maharjan, Niran; Saxena, Smita; Keogh, Adrian; Keogh-Stroka, Deborah M.; Candinas, Daniel; Beldi, Guido (2016). P2X1 regulated IL-22 secretion by innate lymphoid cells is required for efficient liver regeneration (Unpublished). In: Keystone Symposium. Vancouver. 29.01.2016.
Malinka, Thomas; Keogh, Adrian; Kudira, Ramesh; Moghadamrad, Sheida; McCoy, Kathleen; Keogh-Stroka, Deborah M.; Candinas, Daniel; Beldi, Guido (September 2014). Liver regeneration is not impacted in the absence of intestinal microbiota (Unpublished). In: Schweizerische Gesellschaft für Gastroenterologie (SGG) - Schweizerische Gesellschaft für Viszeralchirurgie (SGVC) Annual Congress. Interlaken. 11.-12.9.2014.
Kudira, Ramesh; Malinka, Thomas; Gomez de Agüero Tamargo, Maria de la Mercedes; Keogh, Adrian; Furer, Cynthia; Keogh-Stroka, Deborah M.; Candinas, Daniel; Beldi, Guido (September 2014). Secretion of IL-22 is modulated by CD39 and is required for liver regeneration post partial hepatectomy. In: Schweizerische Gesellschaft für Gastroenterologie (SGG) - Schweizerische Gesellschaft für Viszeralchirurgie (SGVC) Annual Congress. Interlaken. 11.-12.9.2014.
Malinka, Thomas; Keogh, Adrian; Kudira, Ramesh; Moghadamrad, Sheida; McCoy, Kathleen; Keogh-Stroka, Deborah M.; Candinas, Daniel; Beldi, Guido (September 2014). Travel Award: Liver regeneration is not impacted in the absence of intestinal microbiota (Unpublished). In: Schweizerische Gesellschaft für Gastroenterologie (SGG) - Schweizerische Gesellschaft für Viszeralchirurgie (SGVC) Annual Congress. Interlaken. 11.-12.9.2014.
Malinka, Thomas; Keogh, Adrian; Kudira, Ramesh; Moghadamrad, Sheida; McCoy, Kathleen; Keogh-Stroka, Deborah M.; Candinas, Daniel; Beldi, Guido (May 2014). Liver regeneration is not impacted in the absence of intestinal microbiota. (Unpublished). In: Annual meeting of the Swiss Surgical Society. Bern. 21.-23.05.2014.
Graubardt, Nadine; Fahrner, René; Trochsler, Markus; Keogh, Adrian; Breu, Karin; Furer, Cynthia; Keogh-Stroka, Deborah M.; Robson, Simon C.; Slack, Emma; Candinas, Daniel; Beldi, Guido (2013). Promotion of liver regeneration by natural killer cells in a murine model is dependent on extracellular adenosine triphosphate phosphohydrolysis. Hepatology, 57(5), pp. 1969-1979. Wiley Interscience 10.1002/hep.26008
Pfister, Simona P.; Schären, Olivier P.; Beldi, Luca; Printz, Andrea; D. Notter, Matheus; Mukherjee, Mohana; Li, Hai; Limenitakis, Julien P.; Werren, Joel P.; Tandon, Disha; Cuenca, Miguelangel; Hagemann, Stefanie; Uster, Stephanie S.; Terrazos, Miguel A.; Gomez de Agüero, Mercedes; Schürch, Christian M.; M. Coelho, Fernanda; Curtiss, Roy; Slack, Emma; Balmer, Maria L; ... (2021). Author Correction: Uncoupling of invasive bacterial mucosal immunogenicity from pathogenicity. Nature Communications, 12(1), p. 798. Springer Nature 10.1038/s41467-021-21096-5
Pfister, Simona; Schären, Olivier P.; Beldi, Luca; Printz, Andrea; Notter, Matheus D.; Mukherjee, Mohana; Li, Hai; Limenitakis, Julien P.; Werren, Joel P.; Tandon, Disha; Cuenca Vera, Miguelangel; Hagemann, Stefanie Claudia; Uster, Stephanie S.; Terrazos, Miguel A.; Gomez de Agüero, Mercedes; Schürch, Christian M.; Matos Coelho, Fernanda; Curtiss, Roy; Slack, Emma; Balmer, Maria L.; ... (2020). Uncoupling of invasive bacterial mucosal immunogenicity from pathogenicity. Nature Communications, 11(1), p. 1978. Springer Nature 10.1038/s41467-020-15891-9
Balmer, Maria L.; Trueb, Beat; Zhuang, Lei; Slack, Emma; Beltraminelli, Helmut; Villiger, Peter Matthias (2013). Splicing defect of CD33 and inflammatory syndrome associated with occult bacterial infection. Journal of allergy and clinical immunology, 132(2), 490-493.e2. Mosby 10.1016/j.jaci.2013.03.027
Katsidzira, Leolin; Mudombi, Wisdom F; Makunike-Mutasa, Rudo; Yilmaz, Bahtiyar; Blank, Annika; Rogler, Gerhard; Macpherson, Andrew; Vavricka, Stephan; Gangaidzo, Innocent; Misselwitz, Benjamin (2020). Inflammatory bowel disease in sub-Saharan Africa: a protocol of a prospective registry with a nested case-control study. BMJ open, 10(12), e039456. BMJ Publishing Group 10.1136/bmjopen-2020-039456
Dawson, Heather; Novotny, Alexander; Becker, Karen; Reim, Daniel; Langer, Rupert; Gullo, Irene; Svrcek, Magali; Niess, Jan Hendrik; Tutuian, Radu; Truninger, Kaspar; Diamantis, Ioannis; Blank, Annika; Zlobec, Inti; Riddell, Robert H; Carneiro, Fatima; Fléjou, Jean-François; Genta, Robert M; Lugli, Alessandro (2016). Macroscopy predicts tumor progression in gastric cancer: A retrospective patho-historical analysis based on Napoleon Bonaparte's autopsy report. Digestive and liver disease, 48(11), pp. 1378-1385. Elsevier 10.1016/j.dld.2016.07.013
Müller, Alexandra Charlotte; Maubach, Johannes Andreas; Plitzko, Gabriel Andreas; Borbély, Yves Michael; Wiest, Reiner; Nett, Philipp C.; Kröll, Dino (September 2018). Endoscopic rescue procedures in patients with biliary complications and altered anatomy after bariatric surgery (Unpublished). In: SGG SSG Annual Meeting. Interlaken. 27. - 28.9.2018.
Yilmaz, Bahtiyar; Mooser, Catherine; Keller, Irene; Li, Hai; Zimmermann, Jakob; Bosshard, Lars; Fuhrer, Tobias; Gomez de Agüero, Mercedes; Fernandez Trigo, Nerea; Tschanz-Lischer, Heidi; Limenitakis, Julien P.; Hardt, Wolf-Dietrich; McCoy, Kathleen; Stecher, Bärbel; Excoffier, Laurent; Sauer, Uwe; Ganal-Vonarburg, Stephanie C.; Macpherson, Andrew J. (2021). Long-term evolution and short-term adaptation of microbiota strains and sub-strains in mice. Cell host & microbe, 29(4), 650-663.e9. Cell Press 10.1016/j.chom.2021.02.001
Jordi, Sebastian Bruno Ulrich; Botte, Federica; Lang, Brian Matthew; Greuter, Thomas; Krupka, Niklas; Auschra, Bianca; Schreiner, Philipp; Sulz, Michael Christian; Biedermann, Luc; von Känel, Roland; Rogler, Gerhard; Begré, Stefan; Misselwitz, Benjamin (2021). Type D personality is associated with depressive symptoms and clinical activity in inflammatory bowel disease. Alimentary pharmacology & therapeutics, 54(1), pp. 53-67. Wiley-Blackwell 10.1111/apt.16365
Prost, Jean-Christophe; Brunner, Felix; Bovet, Cédric; Grob, Christian; Berchtold, Christian; Schlotterbeck, Götz; Kröll, Dino; Largiadèr, Carlo Rodolfo; Fiedler, Georg Martin; Juillerat, Pascal (2017). A UHPLC–MS/MS method for the quantification of 7α-hydroxy-4-cholesten-3-one to assist in diagnosis of bile acid malabsorption. Clinical mass spectrometry, 3, pp. 1-6. Elsevier 10.1016/j.clinms.2017.02.001
Brasseit, J.; Althaus-Steiner, E.; Faderl, M.; Dickgreber, N.; Saurer, L.; Genitsch, V.; Dolowschiak, T.; Li, Hai; Finke, D.; Hardt, W.-D.; McCoy, Kathleen; Macpherson, Andrew; Corazza, N.; Noti, M.; Mueller, C. (2016). CD4 T cells are required for both development and maintenance of disease in a new mouse model of reversible colitis. Mucosal immunology, 9(3), pp. 689-701. Nature Publishing Group 10.1038/mi.2015.93
Bravo, Francisco; Macpherson, Jamie A; Slack, Emma; Patuto, Nicola; Cahenzli, Julia; McCoy, Kathy D.; Macpherson, Andrew J.; Juillerat, Pascal (2021). Prospective Validation of CD-62L (L-Selectin) as Marker of Durable Response to Infliximab Treatment in Patients With Inflammatory Bowel Disease: A 5-Year Clinical Follow-up. Clinical and translational gastroenterology, 12(2), e00298. Wolters Kluwer Health 10.14309/ctg.0000000000000298
Yilmaz, Bahtiyar; Juillerat, Pascal; Øyås, Ove; Ramon, Charlotte; Bravo, Francisco Damian; Franc, Yannick; Fournier, Nicolas; Michetti, Pierre; Mueller, Christoph; Geuking, Markus; Pittet, Valerie E H; Maillard, Michel H; Rogler, Gerhard; Wiest, Reiner; Stelling, Jörg; Macpherson, Andrew J. (2019). Publisher Correction: Microbial network disturbances in relapsing refractory Crohn's disease. Nature medicine, 25(4), p. 701. Springer Nature 10.1038/s41591-019-0411-9
Yilmaz, Bahtiyar; Juillerat, Pascal; Øyås, Ove; Ramon, Charlotte; Bravo, Francisco Damian; Franc, Yannick; Fournier, Nicolas; Michetti, Pierre; Müller, Christoph; Geuking, Markus; Pittet, Valerie E H; Maillard, Michel H; Rogler, Gerhard; Wiest, Reiner; Stelling, Jörg; Macpherson, Andrew J. (2019). Microbial network disturbances in relapsing refractory Crohn's disease. Nature medicine, 25(2), pp. 323-336. Nature Publishing Group 10.1038/s41591-018-0308-z
Cecchini, Luca; Barmaz, Colette; Coloma Cea, Maria José; Baeschlin, Hannah; Etter, Julian; Netzer, Stefanie; Bregy, Leonie; Marchukov, Dmitrij; Fernandez Trigo, Nerea; Meier, Rachel; Hirschi, Jasmin; Wyss, Jacqueline; Wick, Andrina; Zingg, Joelle; Christensen, Sandro; Radan, Anda-Petronela; Etter, Annina; Müller, Martin; Kaess, Michael; Surbek, Daniel; ... (2023). The Bern Birth Cohort (BeBiCo) to study the development of the infant intestinal microbiota in a high-resource setting in Switzerland: rationale, design, and methods. BMC pediatrics, 23(1), p. 560. BioMed Central 10.1186/s12887-023-04198-5
Graubardt, Nadine; Fahrner, René; Trochsler, Markus; Keogh, Adrian; Breu, Karin; Furer, Cynthia; Keogh-Stroka, Deborah M.; Robson, Simon C.; Slack, Emma; Candinas, Daniel; Beldi, Guido (2013). Promotion of liver regeneration by natural killer cells in a murine model is dependent on extracellular adenosine triphosphate phosphohydrolysis. Hepatology, 57(5), pp. 1969-1979. Wiley Interscience 10.1002/hep.26008
Roder, Thomas; Wüthrich, Daniel; Bär, Cornelia; Sattari, Zahra; Ah, Ueli von; Ronchi, Francesca; Macpherson, Andrew; Ganal-Vonarburg, Stephanie C.; Bruggmann, Rémy; Vergères, Guy (2020). In Silico Comparison Shows that the Pan-Genome of a Dairy-Related Bacterial Culture Collection Covers Most Reactions Annotated to Human Microbiomes. Microorganisms, 8(7) MDPI 10.3390/microorganisms8070966
Prost, Jean-Christophe; Brunner, Felix; Bovet, Cédric; Grob, Christian; Berchtold, Christian; Schlotterbeck, Götz; Kröll, Dino; Largiadèr, Carlo Rodolfo; Fiedler, Georg Martin; Juillerat, Pascal (2017). A UHPLC–MS/MS method for the quantification of 7α-hydroxy-4-cholesten-3-one to assist in diagnosis of bile acid malabsorption. Clinical mass spectrometry, 3, pp. 1-6. Elsevier 10.1016/j.clinms.2017.02.001
Rollenske, Tim; Burkhalter, Sophie; Muerner, Lukas; von Gunten, Stephan; Lukasiewicz, Jolanta; Wardemann, Hedda; Macpherson, Andrew J. (2021). Parallelism of intestinal secretory IgA shapes functional microbial fitness. Nature, 598(7882), pp. 657-661. Springer Nature 10.1038/s41586-021-03973-7
Buschor, Stefanie; Cuenca Vera, Miguelangel; Uster, Stephanie Sarah; Schären, Olivier; Balmer, Maria L; Terrazos Miani, Miguel Angel; Schürch, Christian M; Hapfelmeier, Siegfried Hektor (2017). Innate immunity restricts Citrobacter rodentium A/E pathogenesis initiation to an early window of opportunity. PLoS pathogens, 13(6), e1006476. Public Library of Science 10.1371/journal.ppat.1006476
Chandiwana, Panashe; Munjoma, Privilege Tendai; Mazhandu, Arthur John; Li, Jiaqi; Bärtschi, Isabel; Wyss, Jacqueline; Jordi, Sebastian Bruno Ulrich; Mazengera, Lovemore Ronald; Yilmaz, Bahtiyar; Misselwitz, Benjamin; Duri, Kerina (2023). Antenatal gut microbiome profiles and effect on pregnancy outcome in HIV infected and HIV uninfected women in a resource limited setting. BMC microbiology, 23(1), p. 4. BioMed Central 10.1186/s12866-022-02747-z
Sánchez-Taltavull, Daniel; Castelo-Székely, Violeta; Murugan, Shaira; Hamley, Jonathan I. D.; Rollenske, Tim; Ganal-Vonarburg, Stephanie C.; Büchi, Isabel; Keogh, Adrian; Li, Hai; Salm, Lilian; Spari, Daniel; Yilmaz, Bahtiyar; Zimmermann, Jakob; Gerfin, Michael; Roldan, Edgar; Beldi, Guido (2021). Regular testing of asymptomatic healthcare workers identifies cost-efficient SARS-CoV-2 preventive measures. PLoS ONE, 16(11), e0258700. Public Library of Science 10.1371/journal.pone.0258700
Kohler, Andreas; Büchi, Isabel; Melin, Nicolas; Bayer, F.; McCoy, Kathleen; Candinas, Daniel; Keogh-Stroka, Deborah M. (2018). The IL-33/ST2 axes contributes to hepatocyte proliferation and promotes development of hepatocellular carcinoma. HPB : official journal of The International Hepato-Pancreato-Biliary Association, 20(Suppl. 2), S261-S261. Elsevier 10.1016/j.hpb.2018.06.205
Bravo, Francisco; Macpherson, Jamie A; Slack, Emma; Patuto, Nicola; Cahenzli, Julia; McCoy, Kathy D.; Macpherson, Andrew J.; Juillerat, Pascal (2021). Prospective Validation of CD-62L (L-Selectin) as Marker of Durable Response to Infliximab Treatment in Patients With Inflammatory Bowel Disease: A 5-Year Clinical Follow-up. Clinical and translational gastroenterology, 12(2), e00298. Wolters Kluwer Health 10.14309/ctg.0000000000000298
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Jordi, Sebastian Bruno Ulrich; Misselwitz, Benjamin (2024). Refining the Concept of Microscopic Colitis: HLA Signatures Discriminating Collagenous and Lymphocytic Colitis. Journal of Crohn's & colitis, 18(3), pp. 339-340. 10.1093/ecco-jcc/jjad211
Chandiwana, Panashe; Munjoma, Privilege Tendai; Mazhandu, Arthur John; Li, Jiaqi; Bärtschi, Isabel; Wyss, Jacqueline; Jordi, Sebastian Bruno Ulrich; Mazengera, Lovemore Ronald; Yilmaz, Bahtiyar; Misselwitz, Benjamin; Duri, Kerina (2023). Antenatal gut microbiome profiles and effect on pregnancy outcome in HIV infected and HIV uninfected women in a resource limited setting. BMC microbiology, 23(1), p. 4. BioMed Central 10.1186/s12866-022-02747-z
Munjoma, Privilege Tendai; Chandiwana, Panashe; Wyss, Jacqueline; Mazhandu, Arthur John; Jordi, Sebastian Bruno Ulrich; Gutsire, Rutendo; Katsidzira, Leolin; Yilmaz, Bahtiyar; Misselwitz, Benjamin; Duri, Kerina (2023). Immune activation and inflammation in lactating women on combination antiretroviral therapy: role of gut dysfunction and gut microbiota imbalance. Frontiers in immunology, 14(1280262), p. 1280262. Frontiers Research Foundation 10.3389/fimmu.2023.1280262
Jordi, Sebastian Bruno Ulrich; Lang, Brian Matthew; Wyss, Jacqueline; Auschra, Bianca; Yilmaz, Bahtiyar; Krupka, Niklas; Greuter, Thomas; Schreiner, Philipp; Biedermann, Luc; Preisig, Martin; von Känel, Roland; Rogler, Gerhard; Begré, Stefan; Misselwitz, Benjamin (2022). The personality traits activity, self-reproach, and negative affect jointly predict clinical recurrence, depressive symptoms, and low quality of life in inflammatory bowel disease patients. Journal of gastroenterology, 57(11), pp. 848-866. Springer 10.1007/s00535-022-01902-7
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Marchukov, Dmitrij; Li, Jiaqi; Juillerat, Pascal; Misselwitz, Benjamin; Yilmaz, Bahtiyar (2023). Benchmarking microbial DNA enrichment protocols from human intestinal biopsies. Frontiers in genetics, 14(1184473), p. 1184473. Frontiers Media SA 10.3389/fgene.2023.1184473
Denoth, Luisa; Juillerat, Pascal; Kremer, Andreas E; Rogler, Gerhard; Scharl, Michael; Yilmaz, Bahtiyar; Bluemel, Sena (2021). Modulation of the Mucosa-Associated Microbiome Linked to the PTPN2 Risk Gene in Patients with Primary Sclerosing Cholangitis and Ulcerative Colitis. Microorganisms, 9(8) MDPI 10.3390/microorganisms9081752
Bravo, Francisco; Macpherson, Jamie A; Slack, Emma; Patuto, Nicola; Cahenzli, Julia; McCoy, Kathy D.; Macpherson, Andrew J.; Juillerat, Pascal (2021). Prospective Validation of CD-62L (L-Selectin) as Marker of Durable Response to Infliximab Treatment in Patients With Inflammatory Bowel Disease: A 5-Year Clinical Follow-up. Clinical and translational gastroenterology, 12(2), e00298. Wolters Kluwer Health 10.14309/ctg.0000000000000298
Humbel, Fabienne; Rieder Harrell, Jessica; Franc, Yannick; Juillerat, Pascal; Scharl, Michael; Misselwitz, Benjamin; Schreiner, Philipp; Begré, Stefan; Rogler, Gerhard; von Känel, Roland; Yilmaz, Bahtiyar; Biedermann, Luc (2020). Association of Alterations in Intestinal Microbiota With Impaired Psychological Function in Patients With Inflammatory Bowel Diseases in Remission. Clinical gastroenterology and hepatology, 18(9), 2019-2029.e11. Elsevier 10.1016/j.cgh.2019.09.022
Juillerat, Pascal; Manz, Michael; Sauter, Bernhard; Zeitz, Jonas; Vavricka, Stephan R. (2020). Therapies in Inflammatory Bowel Disease Patients with Extraintestinal Manifestations. Digestion, 101(S1), pp. 83-97. Karger 10.1159/000502816
Burri, Emanuel; Juillerat, Pascal; Maillard, Michel H; Manz, Michael; Michetti, Pierre; Mottet, Christian; Rogler, Gerhard; Zahnd, Nadine; Vavricka, Stephan (2019). Position statement on the use of biosimilars in inflammatory bowel disease. Swiss medical weekly, 149, w20148. EMH Media 10.4414/smw.2019.20148
Schreiner, Philipp; Yilmaz, Bahtiyar; Rossel, Jean-Benoît; Franc, Yannick; Misselwitz, Benjamin; Scharl, Michael; Zeitz, Jonas; Frei, Pascal; Greuter, Thomas; Vavricka, Stephan R; Pittet, Valérie; Siebenhüner, Alexander; Juillerat, Pascal; von Känel, Roland; Macpherson, Andrew J; Rogler, Gerhard; Biedermann, Luc (2019). Vegetarian or gluten-free diets in patients with inflammatory bowel disease are associated with lower psychological well-being and a different gut microbiota, but no beneficial effects on the course of the disease. United european gastroenterology journal, 7(6), pp. 767-781. Sage 10.1177/2050640619841249
Yilmaz, Bahtiyar; Juillerat, Pascal; Øyås, Ove; Ramon, Charlotte; Bravo, Francisco Damian; Franc, Yannick; Fournier, Nicolas; Michetti, Pierre; Mueller, Christoph; Geuking, Markus; Pittet, Valerie E H; Maillard, Michel H; Rogler, Gerhard; Wiest, Reiner; Stelling, Jörg; Macpherson, Andrew J. (2019). Publisher Correction: Microbial network disturbances in relapsing refractory Crohn's disease. Nature medicine, 25(4), p. 701. Springer Nature 10.1038/s41591-019-0411-9
Yilmaz, Bahtiyar; Juillerat, Pascal; Øyås, Ove; Ramon, Charlotte; Bravo, Francisco Damian; Franc, Yannick; Fournier, Nicolas; Michetti, Pierre; Müller, Christoph; Geuking, Markus; Pittet, Valerie E H; Maillard, Michel H; Rogler, Gerhard; Wiest, Reiner; Stelling, Jörg; Macpherson, Andrew J. (2019). Microbial network disturbances in relapsing refractory Crohn's disease. Nature medicine, 25(2), pp. 323-336. Nature Publishing Group 10.1038/s41591-018-0308-z
Yilmaz, Bahtiyar; Spalinger, Marianne R; Biedermann, Luc; Franc, Yannick; Fournier, Nicolas; Rossel, Jean-Benoit; Juillerat, Pascal; Rogler, Gerhard; Macpherson, Andrew J.; Scharl, Michael (2018). The presence of genetic risk variants within PTPN2 and PTPN22 is associated with intestinal microbiota alterations in Swiss IBD cohort patients. PLoS ONE, 13(7), e0199664. Public Library of Science 10.1371/journal.pone.0199664
Pepe, Jessica; Zawadynski, Sophie; Herrmann, Francois R; Juillerat, Pascal; Michetti, Pierre; Ferrari-Lacraz, Sylvie; Belli, Dominique; Ratib, Osman; Rizzoli, René; Chevalley, Thierry; Ferrari, Serge L (2017). Structural Basis of Bone Fragility in Young Subjects with Inflammatory Bowel Disease: A High-resolution pQCT Study of the SWISS IBD Cohort (SIBDC). Inflammatory bowel diseases, 23(8), pp. 1410-1417. Lippincott Williams & Wilkins 10.1097/MIB.0000000000001139
Gomollón, Fernando; Dignass, Axel; Annese, Vito; Tilg, Herbert; Van Assche, Gert; Lindsay, James O; Peyrin-Biroulet, Laurent; Cullen, Garret J; Daperno, Marco; Kucharzik, Torsten; Rieder, Florian; Almer, Sven; Armuzzi, Alessandro; Harbord, Marcus; Langhorst, Jost; Sans, Miquel; Chowers, Yehuda; Fiorino, Gionata; Juillerat, Pascal; Mantzaris, Gerassimos J; ... (2017). 3rd European Evidence-based Consensus on the Diagnosis and Management of Crohn's Disease 2016: Part 1: Diagnosis and Medical Management. Journal of Crohn's & colitis, 11(1), pp. 3-25. Oxford University Press 10.1093/ecco-jcc/jjw168
Prost, Jean-Christophe; Brunner, Felix; Bovet, Cédric; Grob, Christian; Berchtold, Christian; Schlotterbeck, Götz; Kröll, Dino; Largiadèr, Carlo Rodolfo; Fiedler, Georg Martin; Juillerat, Pascal (2017). A UHPLC–MS/MS method for the quantification of 7α-hydroxy-4-cholesten-3-one to assist in diagnosis of bile acid malabsorption. Clinical mass spectrometry, 3, pp. 1-6. Elsevier 10.1016/j.clinms.2017.02.001
Mottet, Christian; Schoepfer, Alain M; Juillerat, Pascal; Cosnes, Jacques; Froehlich, Florian; Kessler-Brondolo, Vera; Seibold, Frank; Rogler, Gerhard; Vavricka, Stephan R; Michetti, Pierre (2016). Experts Opinion on the Practical Use of Azathioprine and 6-Mercaptopurine in Inflammatory Bowel Disease. Inflammatory bowel diseases, 22(11), pp. 2733-2747. Lippincott Williams & Wilkins 10.1097/MIB.0000000000000923
Mikocka-Walus, Antonina; Pittet, Valerie; Rossel, Jean-Benoît; Juillerat, Pascal; Tutuian, Radu; Wiest, Reiner; von Känel, Roland; Swiss IBD, Cohort Study Group (2016). Symptoms of Depression and Anxiety Are Independently Associated With Clinical Recurrence of Inflammatory Bowel Disease. Clinical gastroenterology and hepatology, 14(6), 829-835.e1. Elsevier 10.1016/j.cgh.2015.12.045
Müller, Rebekka; Ziade, Farah; Pittet, Valérie; Fournier, Nicolas; Ezri, Jessica; Schoepfer, Alain; Schibli, Susanne; Spalinger, Johannes; Braegger, Christian; Nydegger, Andreas; Juillerat, Pascal; Tutuian, Radu; Wiest, Reiner; Müller, Christoph; Swiss IBD Cohort Study Group, . (2016). Quality of Life in Swiss Paediatric Inflammatory Bowel Disease Patients: Do Patients and Their Parents Experience Disease in the Same Way? Journal of Crohn's & colitis, 10(3), pp. 269-276. Oxford University Press 10.1093/ecco-jcc/jjv199
Ruetsch, Roseline; Juillerat, Pascal; Flatz, Aline; von Elm, Erik (2016). [Does long-term use of proton pump inhibitors promote premalignant lesions of the gastric mucosa?]. Praxis - schweizerische Rundschau für Medizin, 105(4), pp. 221-222. Huber 10.1024/1661-8157/a002262
Juillerat, Pascal (19 November 2015). Smoking: What's new? (Unpublished). In: Berner IBD Symposium. Bern. 19.11.2015.
Juillerat, Pascal (November 2015). Tabac et qualité de vie (Unpublished). In: 9 ème Congrès national de la Société Française de Tabacologie. Toulouse. 05.-06.11.2015.
Juillerat, Pascal (October 2015). Swiss Perspectives in Gastroenterology (Unpublished). In: UEGW (United European Gastroenterology Week). Barcelona. October 2015.
Juillerat, Pascal; Peter, M; Macpherson, James; Slack, Emma; Patuto, Nicola; Cahenzli, Julia; Seibold, Frank Werner; McCoy, Kathleen; Macpherson, Andrew (February 2015). Measurement of functional blocade of TNF-alpha by anti-TNF agents is a stronger predictor than trough levels and anti-drug antibodies: 2-year prospective clinical data (Unpublished). In: European Crohn’s and colitis organization congress (ECCO). Barcelona. Februar 2015.
Juillerat, Pascal (2015). P1557 Measurement of Funtional Blocade of TNF-alpha by anti-TNF Agents Is A Stronger Predictor Than Through Levels And Anti-Drug Antibodies: 3-Year Prospective Clinical Data (Unpublished). In: 23rd United European Gastroenterology Week (UEGW). Barcelona. 24.-28.10.2015.
Juillerat, Pascal; Andrew, Peter; Macpherson, James; Slack, Emma; Seibold, Frank Werner; Cahenzli, Julia; McCoy, Kathleen; Macpherson, Andrew (2015). Measurement of functional blocade of TNF-alpha by anti-TNF agents is a stronger predictor than trough levels and anti-drug antibodies: 2-year prospective clinical data. Gastroenterology, 148(4), pp. 850-1. Elsevier
Schaffer, Thomas; Schoepfer, Alain M; Seibold, Frank Werner; Juillerat, Pascal; Swiss Inflammatory Bowel Diseases Cohort Study Group, The (2014). Serum ficolin-2 correlates worse than fecal calprotectin and CRP with endoscopic Crohn's disease activity. Journal of Crohn's & Colitis, 8(9), pp. 1125-1132. Oxford University Press 10.1016/j.crohns.2014.02.014
Juillerat, Pascal; Andrew, Peter Michael; Macpherson, James; Slack, Emma; Cahenzli, Julia; Seibold, Frank Werner; McCoy, Kathleen; Macpherson, Andrew (May 2014). CD62L (L-Selectin) Shedding for Assessment of Functional Blockade of TNF-Alpha in Anti-TNF treated Inflammatory Bowel Disease Patients: Clinical Feasibility and Perspectives. Gastroenterology, 146(5), p. 239. Elsevier
Juillerat, Pascal; Andrew, Peter Michael; Macpherson, J; Slack, Emma; Patuto, Nicola; Cahenzli, Julia; McCoy, Kathleen; Macpherson, Andrew (February 2014). CD62L (L-selectin) shedding for assessment of functional blockade of TNF alpha in anti-TNF treated IBD patients: clinical feasibility and perspectives (DOP060). Journal of Crohn's & Colitis, 8(Suppl1), pp. 43-44. Elsevier 10.1016/S1873-9946(14)60085-4
Juillerat, Pascal; Andrew, Peter Michael; Macpherson, James; Slack, Emma; Cahenzli, Julia; Seibold, F.; McCoy, Kathleen; Macpherson, Andrew (2014). CD62L (L-selectin) shedding for assessment of functional blockade of TNF alpha in anti-TNF treated IBD patients: clinical feasibility and perspectives. United european gastroenterology journal, 2(1suppl), A45-A46. Sage
Juillerat, Pascal; Andrew, Peter Michael; Macpherson, James; Slack, Emma; Cahenzli, Julia; Seibold, Frank Werner; McCoy, Kathleen; Macpherson, Andrew (2014). CD62L (L-Selectin) Shedding for Assessment of Functional Blockade of TNF-Alpha in Anti-TNF treated Inflammatory Bowel Disease Patients: Clinical Feasibility and Perspectives. Swiss medical weekly, 144(Suppl206), 3S-3S. EMH Schweizerischer Ärzteverlag
Cecchini, Luca; Barmaz, Colette; Coloma Cea, Maria José; Baeschlin, Hannah; Etter, Julian; Netzer, Stefanie; Bregy, Leonie; Marchukov, Dmitrij; Fernandez Trigo, Nerea; Meier, Rachel; Hirschi, Jasmin; Wyss, Jacqueline; Wick, Andrina; Zingg, Joelle; Christensen, Sandro; Radan, Anda-Petronela; Etter, Annina; Müller, Martin; Kaess, Michael; Surbek, Daniel; ... (2023). The Bern Birth Cohort (BeBiCo) to study the development of the infant intestinal microbiota in a high-resource setting in Switzerland: rationale, design, and methods. BMC pediatrics, 23(1), p. 560. BioMed Central 10.1186/s12887-023-04198-5
Kalbermatter, Cristina Lisa; Fernandez Trigo, Nerea; Christensen, Sandro; Ganal-Vonarburg, Stephanie Christine (2021). Maternal Microbiota, Early Life Colonization and Breast Milk Drive Immune Development in the Newborn. Frontiers in immunology, 12(683022), p. 683022. Frontiers Research Foundation 10.3389/fimmu.2021.683022
Kallol, Sampada Arvindrao; Huang, Xiao; Müller, Stefan Jürg; Ontsouka, Edgar; Albrecht, Christiane (2018). Novel Insights into Concepts and Directionality of Maternal⁻Fetal Cholesterol Transfer across the Human Placenta. International journal of molecular sciences, 19(8) Molecular Diversity Preservation International MDPI 10.3390/ijms19082334
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Kapoglou, Ioannis; Wiest, Reiner; Maubach, Johannes (September 2017). Treatment of a perforated cholecystitis into a congenital liver cyst with EUS-guided liver abscess drainage (Unpublished). In: Annual Meeting Swiss Tech Convention Center (SGG-SSG). Lausanne. 14.09.2017/15.09.2017.
Yilmaz, Bahtiyar; Mooser, Catherine; Keller, Irene; Li, Hai; Zimmermann, Jakob; Bosshard, Lars; Fuhrer, Tobias; Gomez de Agüero, Mercedes; Fernandez Trigo, Nerea; Tschanz-Lischer, Heidi; Limenitakis, Julien P.; Hardt, Wolf-Dietrich; McCoy, Kathleen; Stecher, Bärbel; Excoffier, Laurent; Sauer, Uwe; Ganal-Vonarburg, Stephanie C.; Macpherson, Andrew J. (2021). Long-term evolution and short-term adaptation of microbiota strains and sub-strains in mice. Cell host & microbe, 29(4), 650-663.e9. Cell Press 10.1016/j.chom.2021.02.001
Juanola, Oriol; Hassan, Mohsin; Kumar, Pavitra; Yilmaz, Bahtiyar; Keller, Irene; Simillion, Cedric; Engelmann, Cornelius; Tacke, Frank; Dufour, Jean-François; De Gottardi, Andrea; Moghadamrad, Sheida (2021). Intestinal microbiota drives cholestasis-induced specific hepatic gene expression patterns. Gut microbes, 13(1), pp. 1-20. Taylor & Francis Group 10.1080/19490976.2021.1911534
Mohsin Hassan, Mohsin Hassan; Moghadamrad, Sheida; Sorribas, Marcel; G. Muntet, Sergi; Kellmann, Philipp; Trentesaux, Coralie; Fraudeau, Marie; Nanni, Paolo; Wolski, Witold; Keller, Irene; Hapfelmeier, Siegfried; Shroyer, Noah F; Wiest, Reiner; Romagnolo, Beatrice; De Gottardi, Andrea (2020). Paneth cells promote angiogenesis and regulate portal hypertension in response to microbial signals. Journal of hepatology, 73(3), pp. 628-639. Elsevier 10.1016/j.jhep.2020.03.019
Li, Hai; Limenitakis, Julien Periclis Jean; Fuhrer, Tobias; Geuking, Markus; Lawson, Melissa A; Wyss, Madeleine; Brugiroux, Sandrine; Keller, Irene; Macpherson, Jamie A; Rupp, Sandra; Stolp, Bettina; Stein, Jens Volker; Stecher, Bärbel; Sauer, Uwe; McCoy, Kathleen; Macpherson, Andrew (2015). The outer mucus layer hosts a distinct intestinal microbial niche. Nature communications, 6, p. 8292. Nature Publishing Group 10.1038/ncomms9292
Hassan, Mohsin; Juanola, Oriol; Huber, Stefania; Kellmann, Philipp; Zimmermann, Jakob; Lazzarini, Edoardo; Ganal-Vonarburg, Stephanie C; Gomez de Agüero, Mercedes; Moghadamrad, Sheida (2023). Absence of gut microbiota impairs depletion of Paneth cells but not goblet cells in germ-free Atoh1lox/lox VilCreERT2 mice. American journal of physiology. Gastrointestinal and liver physiology, 324(6), G426-G437. American Physiological Society 10.1152/ajpgi.00123.2022
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Moghadamrad, Sheida; Mohsin Hassan, Mohsin Hassan; McCoy, Kathleen; Kirundi, Jorum; Kellmann, Philipp; De Gottardi, Andrea (2019). Attenuated fibrosis in specific pathogen-free microbiota in experimental cholestasis- and toxin-induced liver injury. FASEB journal, 33(11), pp. 12464-12476. Federation of American Societies for Experimental Biology 10.1096/fj.201901113R
Sánchez-Taltavull, Daniel; Castelo-Székely, Violeta; Murugan, Shaira; Hamley, Jonathan I. D.; Rollenske, Tim; Ganal-Vonarburg, Stephanie C.; Büchi, Isabel; Keogh, Adrian; Li, Hai; Salm, Lilian; Spari, Daniel; Yilmaz, Bahtiyar; Zimmermann, Jakob; Gerfin, Michael; Roldan, Edgar; Beldi, Guido (2021). Regular testing of asymptomatic healthcare workers identifies cost-efficient SARS-CoV-2 preventive measures. PLoS ONE, 16(11), e0258700. Public Library of Science 10.1371/journal.pone.0258700
Kudira, Ramesh; Malinka, Thomas; Kohler, Andreas; Dosch, Michel; Gomez de Agüero Tamargo, Maria de la Mercedes; Melin, Nicolas; Haegele, S; Starlinger, P; Maharjan, Niran; Saxena, Smita; Keogh, Adrian; Keogh-Stroka, Deborah M.; Candinas, Daniel; Beldi, Guido (2016). P2X1 regulated IL-22 secretion by innate lymphoid cells is required for efficient liver regeneration (Unpublished). In: Keystone Symposium. Vancouver. 29.01.2016.
Malinka, Thomas; Keogh, Adrian; Kudira, Ramesh; Moghadamrad, Sheida; McCoy, Kathleen; Keogh-Stroka, Deborah M.; Candinas, Daniel; Beldi, Guido (September 2014). Liver regeneration is not impacted in the absence of intestinal microbiota (Unpublished). In: Schweizerische Gesellschaft für Gastroenterologie (SGG) - Schweizerische Gesellschaft für Viszeralchirurgie (SGVC) Annual Congress. Interlaken. 11.-12.9.2014.
Kudira, Ramesh; Malinka, Thomas; Gomez de Agüero Tamargo, Maria de la Mercedes; Keogh, Adrian; Furer, Cynthia; Keogh-Stroka, Deborah M.; Candinas, Daniel; Beldi, Guido (September 2014). Secretion of IL-22 is modulated by CD39 and is required for liver regeneration post partial hepatectomy. In: Schweizerische Gesellschaft für Gastroenterologie (SGG) - Schweizerische Gesellschaft für Viszeralchirurgie (SGVC) Annual Congress. Interlaken. 11.-12.9.2014.
Malinka, Thomas; Keogh, Adrian; Kudira, Ramesh; Moghadamrad, Sheida; McCoy, Kathleen; Keogh-Stroka, Deborah M.; Candinas, Daniel; Beldi, Guido (September 2014). Travel Award: Liver regeneration is not impacted in the absence of intestinal microbiota (Unpublished). In: Schweizerische Gesellschaft für Gastroenterologie (SGG) - Schweizerische Gesellschaft für Viszeralchirurgie (SGVC) Annual Congress. Interlaken. 11.-12.9.2014.
Malinka, Thomas; Keogh, Adrian; Kudira, Ramesh; Moghadamrad, Sheida; McCoy, Kathleen; Keogh-Stroka, Deborah M.; Candinas, Daniel; Beldi, Guido (May 2014). Liver regeneration is not impacted in the absence of intestinal microbiota. (Unpublished). In: Annual meeting of the Swiss Surgical Society. Bern. 21.-23.05.2014.
Graubardt, Nadine; Fahrner, René; Trochsler, Markus; Keogh, Adrian; Breu, Karin; Furer, Cynthia; Keogh-Stroka, Deborah M.; Robson, Simon C.; Slack, Emma; Candinas, Daniel; Beldi, Guido (2013). Promotion of liver regeneration by natural killer cells in a murine model is dependent on extracellular adenosine triphosphate phosphohydrolysis. Hepatology, 57(5), pp. 1969-1979. Wiley Interscience 10.1002/hep.26008
Jakob, Manuel O; Spari, Daniel; Sánchez Taltavull, Daniel; Salm, Lilian; Yilmaz, Bahtiyar; Doucet Ladevèze, Rémi; Mooser, Catherine; Pereyra, David; Ouyang, Ye; Schmidt, Theresa; Mattiola, Irene; Starlinger, Patrick; Stroka, Deborah; Tschan, Franziska; Candinas, Daniel; Gasteiger, Georg; Klose, Christoph S N; Diefenbach, Andreas; Gomez de Agüero, Mercedes and Beldi, Guido (2023). ILC3s restrict the dissemination of intestinal bacteria to safeguard liver regeneration after surgery. Cell reports, 42(3), p. 112269. Cell Press 10.1016/j.celrep.2023.112269
Jakob, Manuel O.; Sánchez-Taltavull, Daniel; Yilmaz, Bahtiyar; Malinka, Thomas; Mooser, Catherine; Spari, Daniel; Salm, Lilian A.; Freiburghaus, Katrin; Pereyra, David; Hapfelmeier, Siegfried; Masoodi, Mojgan; Starlinger, Patrick; Stroka, Deborah; Tschan, Franziska; Candinas, Daniel; Gomez de Agüero, Mercedes; Beldi, Guido (19 September 2019). Compartmentalization of intestinal bacteria by hepatic ILC3s prevents infections after surgery (bioRxiv). Cold Spring Harbor Laboratory 10.1101/773150
Kohler, Andreas; Büchi, Isabel; Melin, Nicolas; Bayer, F.; McCoy, Kathleen; Candinas, Daniel; Keogh-Stroka, Deborah M. (2018). The IL-33/ST2 axes contributes to hepatocyte proliferation and promotes development of hepatocellular carcinoma. HPB : official journal of The International Hepato-Pancreato-Biliary Association, 20(Suppl. 2), S261-S261. Elsevier 10.1016/j.hpb.2018.06.205
Kudira, Ramesh; Malinka, Thomas; Kohler, Andreas; Dosch, Michel; Gomez de Agüero Tamargo, Maria de la Mercedes; Melin, Nicolas; Haegele, S; Starlinger, P; Maharjan, Niran; Saxena, Smita; Keogh, Adrian; Keogh-Stroka, Deborah M.; Candinas, Daniel; Beldi, Guido (2016). P2X1 regulated IL-22 secretion by innate lymphoid cells is required for efficient liver regeneration (Unpublished). In: Keystone Symposium. Vancouver. 29.01.2016.
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Steinert, Anna; Linas, Ioannis; Kaya, Berna; Ibrahim, Mohamed; Schlitzer, Andreas; Hruz, Petr; Radulovic, Katarina; Terracciano, Luigi; Macpherson, Andrew; Niess, Jan Hendrik (2017). The Stimulation of Macrophages with TLR Ligands Supports Increased IL-19 Expression in Inflammatory Bowel Disease Patients and in Colitis Models. Journal of immunology, 199(7), pp. 2570-2584. American Association of Immunologists 10.4049/jimmunol.1700350
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Papotto, Pedro H; Yilmaz, Bahtiyar; Pimenta, Gonçalo; Mensurado, Sofia; Cunha, Carolina; Fiala, Gina J; Gomes da Costa, Daniel; Gonçalves-Sousa, Natacha; Chan, Brian H K; Blankenhaus, Birte; Domingues, Rita G; Carvalho, Tânia; Hepworth, Matthew R; Macpherson, Andrew J; Allen, Judith E; Silva-Santos, Bruno (2023). Maternal γδ T cells shape offspring pulmonary type 2 immunity in a microbiota-dependent manner. Cell reports, 42(2), p. 112074. Cell Press 10.1016/j.celrep.2023.112074
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Yilmaz, Bahtiyar; Fuhrer, Tobias; Morgenthaler, Deborah; Krupka, Niklas; Wang, Daoming; Spari, Daniel; Candinas, Daniel; Misselwitz, Benjamin; Beldi, Guido; Sauer, Uwe; Macpherson, Andrew J (2022). Plasticity of the adult human small intestinal stoma microbiota. Cell host & microbe, 30(12), 1773-1787.e6. Cell Press 10.1016/j.chom.2022.10.002
Perruzza, Lisa; Strati, Francesco; Raneri, Matteo; Li, Hai; Gargari, Giorgio; Rezzonico-Jost, Tanja; Palatella, Martina; Kwee, Ivo; Morone, Diego; Seehusen, Frauke; Sonego, Paolo; Donati, Claudio; Franceschi, Pietro; Macpherson, Andrew J; Guglielmetti, Simone; Greiff, Victor; Grassi, Fabio (2022). Apyrase-mediated amplification of secretory IgA promotes intestinal homeostasis. Cell reports, 40(3), p. 111112. Cell Press 10.1016/j.celrep.2022.111112
Shmeleva, Evgeniya V; Gomez de Agüero, Mercedes; Wagner, Josef; Enright, Anton J; Macpherson, Andrew J; Ferguson, Brian J; Smith, Geoffrey L (2022). Smallpox vaccination induces a substantial increase in commensal skin bacteria that promote pathology and influence the host response. PLoS pathogens, 18(4), e1009854. Public Library of Science 10.1371/journal.ppat.1009854
Mossad, Omar; Batut, Bérénice; Yilmaz, Bahtiyar; Dokalis, Nikolaos; Mezö, Charlotte; Nent, Elisa; Nabavi, Lara Susann; Mayer, Melanie; Maron, Feres José Mocayar; Buescher, Joerg M; Gomez de Agüero, Mercedes; Szalay, Antal; Lämmermann, Tim; Macpherson, Andrew J; Ganal-Vonarburg, Stephanie C; Backofen, Rolf; Erny, Daniel; Prinz, Marco; Blank, Thomas (2022). Gut microbiota drives age-related oxidative stress and mitochondrial damage in microglia via the metabolite N6-carboxymethyllysine. Nature neuroscience, 25(3), pp. 295-305. Nature America 10.1038/s41593-022-01027-3
Fregolente, L.G.; Warncke, J.D.; van der Meer, J.; Schmidt, M.; Khatami, R.; Macpherson, A.J.; Yilmaz, B.; Bassetti, C.L.A. (2022). SPHYNCS: Gut microbiota composition is different in Narcolepsy type 1 and Narcolepsy Borderland. Sleep medicine, 100, S167. Elsevier 10.1016/j.sleep.2022.05.452
Sankowski, Roman; Ahmari, Jasmin; Mezö, Charlotte; Hrabě de Angelis, Anna Lena; Fuchs, Vidmante; Utermöhlen, Olaf; Buch, Thorsten; Blank, Thomas; Gomez de Agüero, Mercedes; Macpherson, Andrew J; Erny, Daniel (2021). Commensal microbiota divergently affect myeloid subsets in the mammalian central nervous system during homeostasis and disease. The EMBO journal, 40(23), e108605. EMBO Press 10.15252/embj.2021108605
Erny, Daniel; Dokalis, Nikolaos; Mezö, Charlotte; Castoldi, Angela; Mossad, Omar; Staszewski, Ori; Frosch, Maximilian; Villa, Matteo; Fuchs, Vidmante; Mayer, Arun; Neuber, Jana; Sosat, Janika; Tholen, Stefan; Schilling, Oliver; Vlachos, Andreas; Blank, Thomas; Gomez de Agüero, Mercedes; Macpherson, Andrew J; Pearce, Edward J and Prinz, Marco (2021). Microbiota-derived acetate enables the metabolic fitness of the brain innate immune system during health and disease. Cell metabolism, 33(11), 2260-2276.e7. Elsevier 10.1016/j.cmet.2021.10.010
Rollenske, Tim; Burkhalter, Sophie; Muerner, Lukas; von Gunten, Stephan; Lukasiewicz, Jolanta; Wardemann, Hedda; Macpherson, Andrew J. (2021). Parallelism of intestinal secretory IgA shapes functional microbial fitness. Nature, 598(7882), pp. 657-661. Springer Nature 10.1038/s41586-021-03973-7
Yilmaz, Bahtiyar; Mooser, Catherine; Keller, Irene; Li, Hai; Zimmermann, Jakob; Bosshard, Lars; Fuhrer, Tobias; Gomez de Agüero, Mercedes; Fernandez Trigo, Nerea; Tschanz-Lischer, Heidi; Limenitakis, Julien P.; Hardt, Wolf-Dietrich; McCoy, Kathleen; Stecher, Bärbel; Excoffier, Laurent; Sauer, Uwe; Ganal-Vonarburg, Stephanie C.; Macpherson, Andrew J. (2021). Long-term evolution and short-term adaptation of microbiota strains and sub-strains in mice. Cell host & microbe, 29(4), 650-663.e9. Cell Press 10.1016/j.chom.2021.02.001
Colombo, Alessio Vittorio; Sadler, Rebecca Katie; Llovera, Gemma; Singh, Vikramjeet; Roth, Stefan; Heindl, Steffanie; Sebastian Monasor, Laura; Verhoeven, Aswin; Peters, Finn; Parhizkar, Samira; Kamp, Frits; Gomez de Aguero, Mercedes; Macpherson, Andrew; Winkler, Edith; Herms, Jochen; Benakis, Corinne; Dichgans, Martin; Steiner, Harald; Giera, Martin; Haass, Christian; ... (2021). Microbiota-derived short chain fatty acids modulate microglia and promote Aβ plaque deposition. eLife, 10 eLife Sciences Publications 10.7554/eLife.59826
Bravo, Francisco; Macpherson, Jamie A; Slack, Emma; Patuto, Nicola; Cahenzli, Julia; McCoy, Kathy D.; Macpherson, Andrew J.; Juillerat, Pascal (2021). Prospective Validation of CD-62L (L-Selectin) as Marker of Durable Response to Infliximab Treatment in Patients With Inflammatory Bowel Disease: A 5-Year Clinical Follow-up. Clinical and translational gastroenterology, 12(2), e00298. Wolters Kluwer Health 10.14309/ctg.0000000000000298
Jackson, Matthew A; Pearson, Claire; Ilott, Nicholas E; Huus, Kelsey E; Hegazy, Ahmed N; Webber, Jonathan; Finlay, B Brett; Macpherson, Andrew J.; Powrie, Fiona; Lam, Lilian H (2021). Accurate identification and quantification of commensal microbiota bound by host immunoglobulins. Microbiome, 9(1), p. 33. BioMed Central 10.1186/s40168-020-00992-w
Genton, Laurence; Lazarevic, Vladimir; Stojanovic, Ozren; Spiljar, Martina; Djaafar, Souad; Koessler, Thibaud; Dutoit, Valérie; Gaïa, Nadia; Mareschal, Julie; Macpherson, Andrew James; Herrmann, Francois; Trajkovski, Mirko; Schrenzel, Jacques (2021). Metataxonomic and Metabolic Impact of Fecal Microbiota Transplantation From Patients With Pancreatic Cancer Into Germ-Free Mice: A Pilot Study. Frontiers in cellular and infection microbiology, 11, p. 752889. Frontiers 10.3389/fcimb.2021.752889
Katsidzira, Leolin; Mudombi, Wisdom F; Makunike-Mutasa, Rudo; Yilmaz, Bahtiyar; Blank, Annika; Rogler, Gerhard; Macpherson, Andrew; Vavricka, Stephan; Gangaidzo, Innocent; Misselwitz, Benjamin (2020). Inflammatory bowel disease in sub-Saharan Africa: a protocol of a prospective registry with a nested case-control study. BMJ open, 10(12), e039456. BMJ Publishing Group 10.1136/bmjopen-2020-039456
Li, Hai; Limenitakis, Julien Periclis Jean; Greiff, Victor; Yilmaz, Bahtiyar; Schären, Olivier Pascal; Urbaniak, Camilla; Zünd, Mirjam; Lawson, Melissa; Young, Ian D.; Rupp, Sandra; Heikenwälder, Mathias; McCoy, Kathleen; Hapfelmeier, Siegfried; Ganal-Vonarburg, Stephanie C.; Macpherson, Andrew J. (2020). Mucosal or systemic microbiota exposures shape the B cell repertoire. Nature, 584(7820), pp. 274-278. Springer Nature 10.1038/s41586-020-2564-6
Mezö, Charlotte; Dokalis, Nikolaos; Mossad, Omar; Staszewski, Ori; Neuber, Jana; Yilmaz, Bahtiyar; Schnepf, Daniel; Gomez de Agüero, Mercedes; Ganal-Vonarburg, Stephanie C.; Macpherson, Andrew J.; Meyer-Luehmann, Melanie; Staeheli, Peter; Blank, Thomas; Prinz, Marco; Erny, Daniel (2020). Different effects of constitutive and induced microbiota modulation on microglia in a mouse model of Alzheimer's disease. Acta neuropathologica communications, 8(1), p. 119. BioMed Central 10.1186/s40478-020-00988-5
Healy, Marc E; Boege, Yannick; Hodder, Michael C; Böhm, Friederike; Malehmir, Mohsen; Scherr, Anna-Lena; Jetzer, Jasna; Chan, Lap Kwan; Parrotta, Rossella; Jacob, Kurt; Clerbaux, Laure-Alix; Kreutzer, Susanne; Campbell, Andrew; Gilchrist, Ella; Gilroy, Kathryn; Rodewald, Ann-Katrin; Honcharova-Biletska, Hanna; Schimmer, Roman; Vélez, Karelia; Büeler, Simone; ... (2020). MCL1 Is Required for Maintenance of Intestinal Homeostasis and Prevention of Carcinogenesis in Mice. Gastroenterology, 159(1), pp. 183-199. Elsevier 10.1053/j.gastro.2020.03.017
Roder, Thomas; Wüthrich, Daniel; Bär, Cornelia; Sattari, Zahra; Ah, Ueli von; Ronchi, Francesca; Macpherson, Andrew; Ganal-Vonarburg, Stephanie C.; Bruggmann, Rémy; Vergères, Guy (2020). In Silico Comparison Shows that the Pan-Genome of a Dairy-Related Bacterial Culture Collection Covers Most Reactions Annotated to Human Microbiomes. Microorganisms, 8(7) MDPI 10.3390/microorganisms8070966
Zimmermann, Jakob; Macpherson, Andrew J. (2020). Breast Milk Modulates Transgenerational Immune Inheritance. Cell, 181(6), pp. 1202-1204. Cell Press 10.1016/j.cell.2020.05.030
Schaupp, Laura; Muth, Sabine; Rogell, Leif; Kofoed-Branzk, Michael; Melchior, Felix; Lienenklaus, Stefan; Ganal-Vonarburg, Stephanie C.; Klein, Matthias; Guendel, Fabian; Hain, Tobias; Schütze, Kristian; Grundmann, Ulrike; Schmitt, Vanessa; Dorsch, Martina; Spanier, Julia; Larsen, Pia-Katharina; Schwanz, Thomas; Jäckel, Sven; Reinhardt, Christoph; Bopp, Tobias; ... (2020). Microbiota-Induced Type I Interferons Instruct a Poised Basal State of Dendritic Cells. Cell, 181(5), 1080-1096.e19. Cell Press 10.1016/j.cell.2020.04.022
Ganal-Vonarburg, Stephanie C.; Hornef, Mathias W; Macpherson, Andrew J. (2020). Microbial-host molecular exchange and its functional consequences in early mammalian life. Science, 368(6491), pp. 604-607. American Association for the Advancement of Science 10.1126/science.aba0478
Obata, Yuuki; Castaño, Álvaro; Boeing, Stefan; Bon-Frauches, Ana Carina; Fung, Candice; Fallesen, Todd; Gomez de Agüero, Mercedes; Yilmaz, Bahtiyar; Lopes, Rita; Huseynova, Almaz; Horswell, Stuart; Maradana, Muralidhara Rao; Boesmans, Werend; Vanden Berghe, Pieter; Murray, Andrew J; Stockinger, Brigitta; Macpherson, Andrew J.; Pachnis, Vassilis (2020). Neuronal programming by microbiota regulates intestinal physiology. Nature, 578(7794), pp. 284-289. Springer Nature 10.1038/s41586-020-1975-8
Rollenske, Tim; Macpherson, Andrew J. (2020). Anti-commensal Ig-from enormous diversity to clear function. Mucosal immunology, 13(1), pp. 1-2. Springer Nature 10.1038/s41385-019-0223-8
Wotzka, Sandra Y; Kreuzer, Markus; Maier, Lisa; Arnoldini, Markus; Nguyen, Bidong D; Brachmann, Alexander O; Berthold, Dorothée L; Zünd, Mirjam; Hausmann, Annika; Bakkeren, Erik; Hoces, Daniel; Gül, Ersin; Beutler, Markus; Dolowschiak, Tamas; Zimmermann, Michael; Fuhrer, Tobias; Moor, Kathrin; Sauer, Uwe; Typas, Athanasios; Piel, Jörn; ... (2019). Escherichia coli limits Salmonella Typhimurium infections after diet shifts and fat-mediated microbiota perturbation in mice. Nature microbiology, 4(12), pp. 2164-2174. Springer Nature 10.1038/s41564-019-0568-5
Schreiner, Philipp; Yilmaz, Bahtiyar; Rossel, Jean-Benoît; Franc, Yannick; Misselwitz, Benjamin; Scharl, Michael; Zeitz, Jonas; Frei, Pascal; Greuter, Thomas; Vavricka, Stephan R; Pittet, Valérie; Siebenhüner, Alexander; Juillerat, Pascal; von Känel, Roland; Macpherson, Andrew J; Rogler, Gerhard; Biedermann, Luc (2019). Vegetarian or gluten-free diets in patients with inflammatory bowel disease are associated with lower psychological well-being and a different gut microbiota, but no beneficial effects on the course of the disease. United european gastroenterology journal, 7(6), pp. 767-781. Sage 10.1177/2050640619841249
Yilmaz, Bahtiyar; Juillerat, Pascal; Øyås, Ove; Ramon, Charlotte; Bravo, Francisco Damian; Franc, Yannick; Fournier, Nicolas; Michetti, Pierre; Mueller, Christoph; Geuking, Markus; Pittet, Valerie E H; Maillard, Michel H; Rogler, Gerhard; Wiest, Reiner; Stelling, Jörg; Macpherson, Andrew J. (2019). Publisher Correction: Microbial network disturbances in relapsing refractory Crohn's disease. Nature medicine, 25(4), p. 701. Springer Nature 10.1038/s41591-019-0411-9
Grootjans, Joep; Krupka, Niklas; Hosomi, Shuhei; Matute, Juan D.; Hanley, Thomas; Saveljeva, Svetlana; Gensollen, Thomas; Heijmans, Jarom; Li, Hai; Limenitakis, Julien P.; Ganal-Vonarburg, Stephanie C.; Suo, Shengbao; Luoma, Adrienne M.; Shimodaira, Yosuke; Duan, Jinzhi; Shih, David Q.; Conner, Margaret E.; Glickman, Jonathan N.; Fuhler, Gwenny M.; Palm, Noah W.; ... (2019). Epithelial endoplasmic reticulum stress orchestrates a protective IgA response. Science, 363(6430), pp. 993-998. American Association for the Advancement of Science 10.1126/science.aat7186
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Fabbiano, Salvatore; Suárez-Zamorano, Nicolas; Chevalier, Claire; Lazarević, Vladimir; Kieser, Silas; Rigo, Dorothée; Leo, Stefano; Veyrat-Durebex, Christelle; Gaïa, Nadia; Maresca, Marcello; Merkler, Doron; Gomez de Agüero Tamargo, Maria de la Mercedes; Macpherson, Andrew; Schrenzel, Jacques; Trajkovski, Mirko (2018). Functional Gut Microbiota Remodeling Contributes to the Caloric Restriction-Induced Metabolic Improvements. Cell metabolism, 28(6), 907-921.e7. Cell Press 10.1016/j.cmet.2018.08.005
Maubach, Johannes Andreas; Gruber, Maja; Nett, Philipp C.; Macpherson, Andrew; Worni, Mathias (2018). EUS-guided hepaticojejunostomy with transjejunal per-oral cholangioscopy and electrohydraulic lithotripsy in a patient with complicated choledocholithiasis after Roux-en-Y gastric bypass. VideoGIE, 3(11), pp. 351-353. Elsevier 10.1016/j.vgie.2018.07.017
Maubach, Johannes Andreas; Christen, Stefan; Macpherson, Andrew; Worni, Mathias (2018). Endoscopic intra-abdominal rescue therapy of a dislodged EUS-guided hepaticogastrostomy stent. VideoGIE, 3(10), pp. 308-310. Elsevier 10.1016/j.vgie.2018.07.015
Uchimura, Yasuhiro; Fuhrer, Tobias; Li, Hai; Lawson, Melissa A.; Zimmermann, Michael; Yilmaz, Bahtiyar; Zindel, Joel; Ronchi, Francesca; Sorribas Olivera, Marcel; Hapfelmeier, Siegfried; Ganal-Vonarburg, Stephanie C.; Gomez de Agüero, Mercedes; McCoy, Kathleen D.; Sauer, Uwe; Macpherson, Andrew J. (2018). Antibodies Set Boundaries Limiting Microbial Metabolite Penetration and the Resultant Mammalian Host Response. Immunity, 49(3), 545-559.e5. Cell Press 10.1016/j.immuni.2018.08.004
Yilmaz, Bahtiyar; Schibli, Susanne; Macpherson, Andrew; Sokollik, Christiane (2018). D-lactic Acidosis: Successful Suppression of D-lactate-Producing Lactobacillus by Probiotics. Pediatrics, 142(3) American Academy of Pediatrics 10.1542/peds.2018-0337
Bauché, David; Joyce-Shaikh, Barbara; Jain, Renu; Grein, Jeff; Ku, Karin S; Blumenschein, Wendy M; Ganal-Vonarburg, Stephanie C.; Wilson, Douglas C; McClanahan, Terrill K; Malefyt, Rene de Waal; Macpherson, Andrew J.; Annamalai, Lakshmanan; Yearley, Jennifer H; Cua, Daniel J (2018). LAG3 Regulatory T Cells Restrain Interleukin-23-Producing CX3CR1 Gut-Resident Macrophages during Group 3 Innate Lymphoid Cell-Driven Colitis. Immunity, 49(2), 342-352.e5. Cell Press 10.1016/j.immuni.2018.07.007
Macpherson, Andrew; Ganal-Vonarburg, Stephanie (2018). IgA-about the unexpected. Journal of experimental medicine, 215(8), pp. 1965-1966. Rockefeller University Press 10.1084/jem.20181153
Maubach, Johannes Andreas; Macpherson, Andrew; Gloor, Beat; Worni, Mathias (2018). EUS-guided pancreaticogastrostomy and transgastric per-oral pancreatoscopy with electrohydraulic lithotripsy in a patient with chronic hereditary pancreatitis and several intraductal stones. VideoGIE, 3(8), pp. 238-240. Elsevier 10.1016/j.vgie.2018.05.003
Macpherson, Andrew; Ganal-Vonarburg, Stephanie (2018). Checkpoint for gut microbes after birth. Nature, 560(7719), pp. 436-438. Springer 10.1038/d41586-018-05861-z
De Vadder, Filipe; Grasset, Estelle; Mannerås Holm, Louise; Karsenty, Gérard; Macpherson, Andrew; Olofsson, Louise E; Bäckhed, Fredrik (2018). Gut microbiota regulates maturation of the adult enteric nervous system via enteric serotonin networks. Proceedings of the National Academy of Sciences of the United States of America - PNAS, 115(25), pp. 6458-6463. National Academy of Sciences NAS 10.1073/pnas.1720017115
Macpherson, Andrew; Yilmaz, Bahtiyar (2018). Antibodies that lte our intestinal microbes. Science immunology, 3(23) American Association for the Advancement of Science 10.1126/sciimmunol.aat4037
Macpherson, Andrew; Yilmaz, Bahtiyar; Limenitakis, Julien Periclis Jean; Ganal-Vonarburg, Stephanie (2018). IgA Function in Relation to the Intestinal Microbiota. Annual review of immunology, 36, pp. 359-381. Annual Reviews 10.1146/annurev-immunol-042617-053238
Treise, Irina; Huber, Eva M; Klein-Rodewald, Tanja; Heinemeyer, Wolfgang; Grassmann, Simon A; Basler, Michael; Adler, Thure; Rathkolb, Birgit; Helming, Laura; Andres, Christian; Klaften, Matthias; Landbrecht, Christina; Wieland, Thomas; Strom, Tim M; McCoy, Kathleen; Macpherson, Andrew; Wolf, Eckhard; Groettrup, Marcus; Ollert, Markus; Neff, Frauke; ... (2018). Defective immuno- and thymoproteasome assembly causes severe immunodeficiency. Scientific Reports, 8(1), p. 5975. Nature Publishing Group 10.1038/s41598-018-24199-0
Girard-Madoux, Mathilde J H; Gomez de Agüero Tamargo, Maria de la Mercedes; Ganal-Vonarburg, Stephanie; Mooser, Catherine; Belz, Gabrielle T; Macpherson, Andrew; Vivier, Eric (2018). The immunological functions of the Appendix: An example of redundancy? Seminars in immunology, 36, pp. 31-44. Elsevier 10.1016/j.smim.2018.02.005
Macpherson, Andrew (2018). Do the Microbiota Influence Vaccines and Protective Immunity to Pathogens? Issues of Sovereignty, Federalism, and Points-Testing in the Prokaryotic and Eukaryotic Spaces of the Host-Microbial Superorganism. Cold Spring Harbor perspectives in biology, 10(2) Cold Spring Harbor Laboratory Press 10.1101/cshperspect.a029363
Ananthakrishnan, Ashwin N; Bernstein, Charles N; Iliopoulos, Dimitrios; Macpherson, Andrew; Neurath, Markus F; Ali, Raja A Raja; Vavricka, Stephan R; Fiocchi, Claudio (2018). Environmental triggers in IBD: a review of progress and evidence. Nature reviews - gastroenterology & hepatology, 15(1), pp. 39-49. Nature Publishing Group 10.1038/nrgastro.2017.136
Yilmaz, Bahtiyar; Spalinger, Marianne R; Biedermann, Luc; Franc, Yannick; Fournier, Nicolas; Rossel, Jean-Benoit; Juillerat, Pascal; Rogler, Gerhard; Macpherson, Andrew J.; Scharl, Michael (2018). The presence of genetic risk variants within PTPN2 and PTPN22 is associated with intestinal microbiota alterations in Swiss IBD cohort patients. PLoS ONE, 13(7), e0199664. Public Library of Science 10.1371/journal.pone.0199664
Hebbandi Nanjundappa, Roopa; Ronchi, Francesca; Wang, Jinguo; Clemente-Casares, Xavier; Yamanouchi, Jun; Sokke Umeshappa, Channakeshava; Yang, Yang; Blanco, Jesús; Bassolas-Molina, Helena; Salas, Azucena; Khan, Hamza; Slattery, Robyn M; Wyss, Madeleine; Mooser, Catherine; Macpherson, Andrew; Sycuro, Laura K; Serra, Pau; McKay, Derek M; McCoy, Kathleen and Santamaria, Pere (2017). A Gut Microbial Mimic that Hijacks Diabetogenic Autoreactivity to Suppress Colitis. Cell, 171(3), 655-667.e17. Cell Press 10.1016/j.cell.2017.09.022
Garzetti, Debora; Brugiroux, Sandrine; Bunk, Boyke; Pukall, Rüdiger; McCoy, Kathleen; Macpherson, Andrew; Stecher, Bärbel (2017). High-Quality Whole-Genome Sequences of the Oligo-Mouse-Microbiota Bacterial Community. Genome Announcements, 5(42) American Society for Microbiology 10.1128/genomeA.00758-17
Steinert, Anna; Linas, Ioannis; Kaya, Berna; Ibrahim, Mohamed; Schlitzer, Andreas; Hruz, Petr; Radulovic, Katarina; Terracciano, Luigi; Macpherson, Andrew; Niess, Jan Hendrik (2017). The Stimulation of Macrophages with TLR Ligands Supports Increased IL-19 Expression in Inflammatory Bowel Disease Patients and in Colitis Models. Journal of immunology, 199(7), pp. 2570-2584. American Association of Immunologists 10.4049/jimmunol.1700350
Macpherson, Andrew; Gomez de Agüero Tamargo, Maria de la Mercedes; Ganal-Vonarburg, Stephanie (2017). How nutrition and the maternal microbiota shape the neonatal immune system. Nature reviews - immunology, 17(8), pp. 508-517. Nature Publishing Group 10.1038/nri.2017.58
Cassano, Marco; Offner, Sandra; Planet, Evarist; Piersigilli, Alessandra; Jang, Suk Min; Henry, Hugues; Geuking, Markus; Mooser, Catherine; McCoy, Kathleen; Macpherson, Andrew; Trono, Didier (2017). Polyphenic trait promotes liver cancer in a model of epigenetic instability in mice. Hepatology, 66(1), pp. 235-251. Wiley Interscience 10.1002/hep.29182
Brugiroux, Sandrine; Beutler, Markus; Pfann, Carina; Garzetti, Debora; Ruscheweyh, Hans-Joachim; Ring, Diana; Diehl, Manuel; Herp, Simone; Lötscher, Yvonne; Hussain, Saib; Bunk, Boyke; Pukall, Rüdiger; Huson, Daniel H; Münch, Philipp C; McHardy, Alice C; McCoy, Kathleen; Macpherson, Andrew; Loy, Alexander; Clavel, Thomas; Berry, David; ... (2016). Genome-guided design of a defined mouse microbiota that confers colonization resistance against Salmonella enterica serovar Typhimurium. Nature microbiology, 2, p. 16215. Springer Nature 10.1038/nmicrobiol.2016.215
Macpherson, Andrew; Heikenwalder, Mathias; Ganal-Vonarburg, Stephanie (2016). The Liver at the Nexus of Host-Microbial Interactions. Cell host & microbe, 20(5), pp. 561-571. Elsevier 10.1016/j.chom.2016.10.016
Uchimura, Yasuhiro; Wyss, Madeleine; Brugiroux, Sandrine; Limenitakis, Julien Periclis Jean; Stecher, Bärbel; McCoy, Kathleen; Macpherson, Andrew (2016). Complete Genome Sequences of 12 Species of Stable Defined Moderately Diverse Mouse Microbiota 2. Genome Announcements, 4(5) American Society for Microbiology 10.1128/genomeA.00951-16
Ganal-Vonarburg, Stephanie; Macpherson, Andrew (2016). Our Mothers' Antibodies as Guardians of our Commensals. Trends in molecular medicine, 22(9), pp. 739-741. Cell Press 10.1016/j.molmed.2016.06.010
Moor, Kathrin; Fadlallah, Jehane; Toska, Albulena; Sterlin, Delphine; Balmer, Maria Luisa; Macpherson, Andrew; Gorochov, Guy; Larsen, Martin; Slack, Emma (2016). Analysis of bacterial-surface-specific antibodies in body fluids using bacterial flow cytometry. Nature protocols, 11(8), pp. 1531-1553. Nature Publishing Group 10.1038/nprot.2016.091
Balmer, Maria Luisa; Ma, Eric H; Bantug, Glenn R; Grählert, Jasmin; Pfister, Simona; Glatter, Timo; Jauch, Annaïse; Dimeloe, Sarah; Slack, Emma; Dehio, Philippe; Krzyzaniak, Magdalena A; King, Carolyn G; Burgener, Anne-Valérie; Fischer, Marco; Develioglu, Leyla; Belle, Réka; Recher, Mike; Bonilla, Weldy V; Macpherson, Andrew; Hapfelmeier, Siegfried Hektor; ... (2016). Memory CD8(+) T Cells Require Increased Concentrations of Acetate Induced by Stress for Optimal Function. Immunity, 44(6), pp. 1312-1324. Cell Press 10.1016/j.immuni.2016.03.016
Gomez de Agüero Tamargo, Maria de la Mercedes; Ganal-Vonarburg, Stephanie C; Fuhrer, Tobias; Rupp, Sandra Carina; Uchimura, Yasuhiro; Li, Hai; Steinert, Anna; Heikenwalder, Mathias; Hapfelmeier, Siegfried Hektor; Sauer, Uwe; McCoy, Kathleen; Macpherson, Andrew (2016). The maternal microbiota drives early postnatal innate immune development. Science, 351(6279), pp. 1296-1302. American Association for the Advancement of Science 10.1126/science.aad2571
Brasseit, J.; Althaus-Steiner, E.; Faderl, M.; Dickgreber, N.; Saurer, L.; Genitsch, V.; Dolowschiak, T.; Li, Hai; Finke, D.; Hardt, W.-D.; McCoy, Kathleen; Macpherson, Andrew; Corazza, N.; Noti, M.; Mueller, C. (2016). CD4 T cells are required for both development and maintenance of disease in a new mouse model of reversible colitis. Mucosal immunology, 9(3), pp. 689-701. Nature Publishing Group 10.1038/mi.2015.93
Zaiss, Mario M; Rapin, Alexis; Lebon, Luc; Dubey, Lalit Kumar; Mosconi, Ilaria; Sarter, Kerstin; Piersigilli, Alessandra; Menin, Laure; Walker, Alan W; Rougemont, Jacques; Paerewijck, Oonagh; Geldhof, Peter; McCoy, Kathleen; Macpherson, Andrew; Croese, John; Giacomin, Paul R; Loukas, Alex; Junt, Tobias; Marsland, Benjamin J and Harris, Nicola L (2015). The Intestinal Microbiota Contributes to the Ability of Helminths to Modulate Allergic Inflammation. Immunity, 43(5), pp. 998-1010. Cell Press 10.1016/j.immuni.2015.09.012
Macpherson, Andrew; McCoy, Kathleen (2015). Independence Day for IgA. Immunity, 43(3), pp. 416-418. Cell Press 10.1016/j.immuni.2015.08.024
Macpherson, Andrew; Köller, Yasmin; McCoy, Kathleen (2015). The bilateral responsiveness between intestinal microbes and IgA. Trends in immunology, 36(8), pp. 460-470. Elsevier 10.1016/j.it.2015.06.006
Mager, Lukas; Riether, Carsten; Schürch, Christian; Banz Wälti, Yara; Wasmer, Marie-Hélène Christin; Stuber Roos, Regula; Theocharides, Alexandre; Li, Xiaohong; Xia, Yu; Saito, Hirohisa; Nakae, Susumu; Baerlocher, Gabriela M.; Manz, Markus G; McCoy, Kathleen; Macpherson, Andrew; Ochsenbein, Adrian; Beutler, Bruce; Krebs, Philippe (2015). IL-33 signaling contributes to the pathogenesis of myeloproliferative neoplasms. Journal of clinical investigation, 125(7), pp. 2579-2591. American Society for Clinical Investigation 10.1172/JCI77347
Moghadamrad, Sheida; McCoy, Kathleen; Geuking, Markus; Sägesser, Hans; Kirundi, Jorum; Macpherson, Andrew; De Gottardi, Andrea (2015). Attenuated portal hypertension in germ-free mice: Function of bacterial flora on the development of mesenteric lymphatic and blood vessels. Hepatology, 61(5), pp. 1685-1695. Wiley Interscience 10.1002/hep.27698
Juillerat, Pascal; Peter, M; Macpherson, James; Slack, Emma; Patuto, Nicola; Cahenzli, Julia; Seibold, Frank Werner; McCoy, Kathleen; Macpherson, Andrew (February 2015). Measurement of functional blocade of TNF-alpha by anti-TNF agents is a stronger predictor than trough levels and anti-drug antibodies: 2-year prospective clinical data (Unpublished). In: European Crohn’s and colitis organization congress (ECCO). Barcelona. Februar 2015.
Macpherson, Andrew; McCoy, Kathleen (2015). Standardised animal models of host microbial mutualism. Mucosal immunology, 8(3), pp. 476-486. Nature Publishing Group 10.1038/mi.2014.113
Li, Hai; Limenitakis, Julien Periclis Jean; Ganal, Stephanie; Macpherson, Andrew (2015). Penetrability of the inner mucus layer: who is out there? EMBO reports, 16(2), pp. 127-129. Nature Publishing Group 10.15252/embr.201439943
Li, Hai; Limenitakis, Julien Periclis Jean; Fuhrer, Tobias; Geuking, Markus; Lawson, Melissa A; Wyss, Madeleine; Brugiroux, Sandrine; Keller, Irene; Macpherson, Jamie A; Rupp, Sandra; Stolp, Bettina; Stein, Jens Volker; Stecher, Bärbel; Sauer, Uwe; McCoy, Kathleen; Macpherson, Andrew (2015). The outer mucus layer hosts a distinct intestinal microbial niche. Nature communications, 6, p. 8292. Nature Publishing Group 10.1038/ncomms9292
Juillerat, Pascal; Andrew, Peter; Macpherson, James; Slack, Emma; Seibold, Frank Werner; Cahenzli, Julia; McCoy, Kathleen; Macpherson, Andrew (2015). Measurement of functional blocade of TNF-alpha by anti-TNF agents is a stronger predictor than trough levels and anti-drug antibodies: 2-year prospective clinical data. Gastroenterology, 148(4), pp. 850-1. Elsevier
Balmer, Maria L; Schürch, Christian; Saito, Yasuyuki; Geuking, Markus; Li, Hai; Cuenca, Miguelangel; Kovtonyuk, Larisa V; McCoy, Kathleen; Hapfelmeier, Siegfried; Ochsenbein, Adrian; Manz, Markus G; Slack, Emma; Macpherson, Andrew (2014). Microbiota-derived compounds drive steady-state granulopoiesis via MyD88/TICAM signaling. Journal of immunology, 193(10), pp. 5273-5283. American Association of Immunologists 10.4049/jimmunol.1400762
Slack, Emma; Balmer, Maria Luisa; Macpherson, Andrew (2014). B cells as a critical node in the microbiota-host immune system network. Immunological reviews, 260(1), pp. 50-66. Wiley-Blackwell 10.1111/imr.12179
Balmer, Maria Luisa; Slack, Emma; De Gottardi, Andrea; Lawson, Melissa; Hapfelmeier, Siegfried Hektor; Miele, Luca; Grieco, Antonio; Van Vlierberghe, Hans; Fahrner, René; Patuto, Nicola; Bernsmeier, Christine; Ronchi, Francesca; Wyss, Madeleine; Keogh-Stroka, Deborah M.; Dickgreber, Nina; Heim, Markus H; McCoy, Kathy D; Macpherson, Andrew (2014). The liver may act as a firewall mediating mutualism between the host and its gut commensal microbiota. Science translational medicine, 6(237), 237ra66. American Association for the Advancement of Science 10.1126/scitranslmed.3008618
Juillerat, Pascal; Andrew, Peter Michael; Macpherson, James; Slack, Emma; Cahenzli, Julia; Seibold, Frank Werner; McCoy, Kathleen; Macpherson, Andrew (May 2014). CD62L (L-Selectin) Shedding for Assessment of Functional Blockade of TNF-Alpha in Anti-TNF treated Inflammatory Bowel Disease Patients: Clinical Feasibility and Perspectives. Gastroenterology, 146(5), p. 239. Elsevier
Lécuyer, Emelyne; Rakotobe, Sabine; Lengliné-Garnier, Hélène; Lebreton, Corinne; Picard, Marion; Juste, Catherine; Fritzen, Rémi; Eberl, Gérard; McCoy, Kathleen; Macpherson, Andrew; Reynaud, Claude-Agnès; Cerf-Bensussan, Nadine; Gaboriau-Routhiau, Valérie (2014). Segmented filamentous bacterium uses secondary and tertiary lymphoid tissues to induce gut IgA and specific T helper 17 cell responses. Immunity, 40(4), pp. 608-620. Cell Press 10.1016/j.immuni.2014.03.009
Juillerat, Pascal; Andrew, Peter Michael; Macpherson, J; Slack, Emma; Patuto, Nicola; Cahenzli, Julia; McCoy, Kathleen; Macpherson, Andrew (February 2014). CD62L (L-selectin) shedding for assessment of functional blockade of TNF alpha in anti-TNF treated IBD patients: clinical feasibility and perspectives (DOP060). Journal of Crohn's & Colitis, 8(Suppl1), pp. 43-44. Elsevier 10.1016/S1873-9946(14)60085-4
Ganal, Stephanie; Macpherson, Andrew (2014). An ambulance for retinol. eLife, 3(e04246), e04246. eLife Sciences Publications 10.7554/eLife.04246
Ronchi, Francesca; Rupp, Sandra; Steinert, Anna; Wyss, Madeleine; McCoy, Kathleen; Macpherson, Andrew (2014). Microbiota-mediated fine-tuning of the threshold of intestinal inflammasome activation in host-microbial mutualism (Unpublished). In: EMIG2014. Glasgow, UK.
Juillerat, Pascal; Andrew, Peter Michael; Macpherson, James; Slack, Emma; Cahenzli, Julia; Seibold, F.; McCoy, Kathleen; Macpherson, Andrew (2014). CD62L (L-selectin) shedding for assessment of functional blockade of TNF alpha in anti-TNF treated IBD patients: clinical feasibility and perspectives. United european gastroenterology journal, 2(1suppl), A45-A46. Sage
Juillerat, Pascal; Andrew, Peter Michael; Macpherson, James; Slack, Emma; Cahenzli, Julia; Seibold, Frank Werner; McCoy, Kathleen; Macpherson, Andrew (2014). CD62L (L-Selectin) Shedding for Assessment of Functional Blockade of TNF-Alpha in Anti-TNF treated Inflammatory Bowel Disease Patients: Clinical Feasibility and Perspectives. Swiss medical weekly, 144(Suppl206), 3S-3S. EMH Schweizerischer Ärzteverlag
Macpherson, Andrew; McCoy, Kathleen (2013). Stratification and compartmentalisation of immunoglobulin responses to commensal intestinal microbes. Seminars in immunology, 25(5), pp. 358-363. W.B. Saunders 10.1016/j.smim.2013.09.004
Geuking, Markus B.; McCoy, Kathleen; Macpherson, Andrew J. (2013). Metabolites from intestinal microbes shape Treg. Cell research, 23(12), pp. 1339-1340. Nature Publishing Group 10.1038/cr.2013.125
Markle, J. G. M.; Frank, D. N.; Mortin-Toth, S.; Robertson, C. E.; Feazel, L. M.; Rolle-Kampczyk, U.; von Bergen, Melanie; McCoy, Kathleen; Macpherson, Andrew; Danska, J. S. (2013). Sex Differences in the Gut Microbiome Drive Hormone-Dependent Regulation of Autoimmunity. Science, 339(6123), pp. 1084-1088. American Association for the Advancement of Science 10.1126/science.1233521
Mager, Lukas; Riether, Carsten; Schürch, Christian; Banz Wälti, Yara; Wasmer, Marie-Hélène Christin; Stuber Roos, Regula; Theocharides, Alexandre; Li, Xiaohong; Xia, Yu; Saito, Hirohisa; Nakae, Susumu; Baerlocher, Gabriela M.; Manz, Markus G; McCoy, Kathleen; Macpherson, Andrew; Ochsenbein, Adrian; Beutler, Bruce; Krebs, Philippe (2015). IL-33 signaling contributes to the pathogenesis of myeloproliferative neoplasms. Journal of clinical investigation, 125(7), pp. 2579-2591. American Society for Clinical Investigation 10.1172/JCI77347
Kudira, Ramesh; Malinka, Thomas; Kohler, Andreas; Dosch, Michel; Gomez de Agüero Tamargo, Maria de la Mercedes; Melin, Nicolas; Haegele, S; Starlinger, P; Maharjan, Niran; Saxena, Smita; Keogh, Adrian; Keogh-Stroka, Deborah M.; Candinas, Daniel; Beldi, Guido (2016). P2X1 regulated IL-22 secretion by innate lymphoid cells is required for efficient liver regeneration (Unpublished). In: Keystone Symposium. Vancouver. 29.01.2016.
Jakob, Manuel O.; Sánchez-Taltavull, Daniel; Yilmaz, Bahtiyar; Malinka, Thomas; Mooser, Catherine; Spari, Daniel; Salm, Lilian A.; Freiburghaus, Katrin; Pereyra, David; Hapfelmeier, Siegfried; Masoodi, Mojgan; Starlinger, Patrick; Stroka, Deborah; Tschan, Franziska; Candinas, Daniel; Gomez de Agüero, Mercedes; Beldi, Guido (19 September 2019). Compartmentalization of intestinal bacteria by hepatic ILC3s prevents infections after surgery (bioRxiv). Cold Spring Harbor Laboratory 10.1101/773150
Kudira, Ramesh; Malinka, Thomas; Kohler, Andreas; Dosch, Michel; Gomez de Agüero Tamargo, Maria de la Mercedes; Melin, Nicolas; Haegele, S; Starlinger, P; Maharjan, Niran; Saxena, Smita; Keogh, Adrian; Keogh-Stroka, Deborah M.; Candinas, Daniel; Beldi, Guido (2016). P2X1 regulated IL-22 secretion by innate lymphoid cells is required for efficient liver regeneration (Unpublished). In: Keystone Symposium. Vancouver. 29.01.2016.
Malinka, Thomas; Keogh, Adrian; Kudira, Ramesh; Moghadamrad, Sheida; McCoy, Kathleen; Keogh-Stroka, Deborah M.; Candinas, Daniel; Beldi, Guido (September 2014). Liver regeneration is not impacted in the absence of intestinal microbiota (Unpublished). In: Schweizerische Gesellschaft für Gastroenterologie (SGG) - Schweizerische Gesellschaft für Viszeralchirurgie (SGVC) Annual Congress. Interlaken. 11.-12.9.2014.
Kudira, Ramesh; Malinka, Thomas; Gomez de Agüero Tamargo, Maria de la Mercedes; Keogh, Adrian; Furer, Cynthia; Keogh-Stroka, Deborah M.; Candinas, Daniel; Beldi, Guido (September 2014). Secretion of IL-22 is modulated by CD39 and is required for liver regeneration post partial hepatectomy. In: Schweizerische Gesellschaft für Gastroenterologie (SGG) - Schweizerische Gesellschaft für Viszeralchirurgie (SGVC) Annual Congress. Interlaken. 11.-12.9.2014.
Malinka, Thomas; Keogh, Adrian; Kudira, Ramesh; Moghadamrad, Sheida; McCoy, Kathleen; Keogh-Stroka, Deborah M.; Candinas, Daniel; Beldi, Guido (September 2014). Travel Award: Liver regeneration is not impacted in the absence of intestinal microbiota (Unpublished). In: Schweizerische Gesellschaft für Gastroenterologie (SGG) - Schweizerische Gesellschaft für Viszeralchirurgie (SGVC) Annual Congress. Interlaken. 11.-12.9.2014.
Malinka, Thomas; Keogh, Adrian; Kudira, Ramesh; Moghadamrad, Sheida; McCoy, Kathleen; Keogh-Stroka, Deborah M.; Candinas, Daniel; Beldi, Guido (May 2014). Liver regeneration is not impacted in the absence of intestinal microbiota. (Unpublished). In: Annual meeting of the Swiss Surgical Society. Bern. 21.-23.05.2014.
Martin, Juliette; Balmer, Maria Luisa; Rajendran, Saranya; Maurhofer, Olivier; Dufour, Jean-François; St-Pierre Dufour, Marie Vivien (2016). Nutritional stress exacerbates hepatic steatosis induced by deletion of the histidine nucleotide-binding (Hint2) mitochondrial protein. American journal of physiology - gastrointestinal and liver physiology, 310(7), G497-509. American Physiological Society 10.1152/ajpgi.00178.2015
Jakob, Manuel O.; Sánchez-Taltavull, Daniel; Yilmaz, Bahtiyar; Malinka, Thomas; Mooser, Catherine; Spari, Daniel; Salm, Lilian A.; Freiburghaus, Katrin; Pereyra, David; Hapfelmeier, Siegfried; Masoodi, Mojgan; Starlinger, Patrick; Stroka, Deborah; Tschan, Franziska; Candinas, Daniel; Gomez de Agüero, Mercedes; Beldi, Guido (19 September 2019). Compartmentalization of intestinal bacteria by hepatic ILC3s prevents infections after surgery (bioRxiv). Cold Spring Harbor Laboratory 10.1101/773150
Pfister, Simona P.; Schären, Olivier P.; Beldi, Luca; Printz, Andrea; D. Notter, Matheus; Mukherjee, Mohana; Li, Hai; Limenitakis, Julien P.; Werren, Joel P.; Tandon, Disha; Cuenca, Miguelangel; Hagemann, Stefanie; Uster, Stephanie S.; Terrazos, Miguel A.; Gomez de Agüero, Mercedes; Schürch, Christian M.; M. Coelho, Fernanda; Curtiss, Roy; Slack, Emma; Balmer, Maria L; ... (2021). Author Correction: Uncoupling of invasive bacterial mucosal immunogenicity from pathogenicity. Nature Communications, 12(1), p. 798. Springer Nature 10.1038/s41467-021-21096-5
Pfister, Simona; Schären, Olivier P.; Beldi, Luca; Printz, Andrea; Notter, Matheus D.; Mukherjee, Mohana; Li, Hai; Limenitakis, Julien P.; Werren, Joel P.; Tandon, Disha; Cuenca Vera, Miguelangel; Hagemann, Stefanie Claudia; Uster, Stephanie S.; Terrazos, Miguel A.; Gomez de Agüero, Mercedes; Schürch, Christian M.; Matos Coelho, Fernanda; Curtiss, Roy; Slack, Emma; Balmer, Maria L.; ... (2020). Uncoupling of invasive bacterial mucosal immunogenicity from pathogenicity. Nature Communications, 11(1), p. 1978. Springer Nature 10.1038/s41467-020-15891-9
Maubach, Johannes Andreas; Gruber, Maja; Nett, Philipp C.; Macpherson, Andrew; Worni, Mathias (2018). EUS-guided hepaticojejunostomy with transjejunal per-oral cholangioscopy and electrohydraulic lithotripsy in a patient with complicated choledocholithiasis after Roux-en-Y gastric bypass. VideoGIE, 3(11), pp. 351-353. Elsevier 10.1016/j.vgie.2018.07.017
Maubach, Johannes Andreas; Christen, Stefan; Macpherson, Andrew; Worni, Mathias (2018). Endoscopic intra-abdominal rescue therapy of a dislodged EUS-guided hepaticogastrostomy stent. VideoGIE, 3(10), pp. 308-310. Elsevier 10.1016/j.vgie.2018.07.015
Müller, Alexandra Charlotte; Maubach, Johannes Andreas; Plitzko, Gabriel Andreas; Borbély, Yves Michael; Wiest, Reiner; Nett, Philipp C.; Kröll, Dino (September 2018). Endoscopic rescue procedures in patients with biliary complications and altered anatomy after bariatric surgery (Unpublished). In: SGG SSG Annual Meeting. Interlaken. 27. - 28.9.2018.
Maubach, Johannes Andreas; Macpherson, Andrew; Gloor, Beat; Worni, Mathias (2018). EUS-guided pancreaticogastrostomy and transgastric per-oral pancreatoscopy with electrohydraulic lithotripsy in a patient with chronic hereditary pancreatitis and several intraductal stones. VideoGIE, 3(8), pp. 238-240. Elsevier 10.1016/j.vgie.2018.05.003
Kapoglou, Ioannis; Wiest, Reiner; Maubach, Johannes (September 2017). Treatment of a perforated cholecystitis into a congenital liver cyst with EUS-guided liver abscess drainage (Unpublished). In: Annual Meeting Swiss Tech Convention Center (SGG-SSG). Lausanne. 14.09.2017/15.09.2017.
Martin, Juliette; Balmer, Maria Luisa; Rajendran, Saranya; Maurhofer, Olivier; Dufour, Jean-François; St-Pierre Dufour, Marie Vivien (2016). Nutritional stress exacerbates hepatic steatosis induced by deletion of the histidine nucleotide-binding (Hint2) mitochondrial protein. American journal of physiology - gastrointestinal and liver physiology, 310(7), G497-509. American Physiological Society 10.1152/ajpgi.00178.2015
Yilmaz, Bahtiyar; Mooser, Catherine; Keller, Irene; Li, Hai; Zimmermann, Jakob; Bosshard, Lars; Fuhrer, Tobias; Gomez de Agüero, Mercedes; Fernandez Trigo, Nerea; Tschanz-Lischer, Heidi; Limenitakis, Julien P.; Hardt, Wolf-Dietrich; McCoy, Kathleen; Stecher, Bärbel; Excoffier, Laurent; Sauer, Uwe; Ganal-Vonarburg, Stephanie C.; Macpherson, Andrew J. (2021). Long-term evolution and short-term adaptation of microbiota strains and sub-strains in mice. Cell host & microbe, 29(4), 650-663.e9. Cell Press 10.1016/j.chom.2021.02.001
Bravo, Francisco; Macpherson, Jamie A; Slack, Emma; Patuto, Nicola; Cahenzli, Julia; McCoy, Kathy D.; Macpherson, Andrew J.; Juillerat, Pascal (2021). Prospective Validation of CD-62L (L-Selectin) as Marker of Durable Response to Infliximab Treatment in Patients With Inflammatory Bowel Disease: A 5-Year Clinical Follow-up. Clinical and translational gastroenterology, 12(2), e00298. Wolters Kluwer Health 10.14309/ctg.0000000000000298
Li, Hai; Limenitakis, Julien Periclis Jean; Greiff, Victor; Yilmaz, Bahtiyar; Schären, Olivier Pascal; Urbaniak, Camilla; Zünd, Mirjam; Lawson, Melissa; Young, Ian D.; Rupp, Sandra; Heikenwälder, Mathias; McCoy, Kathleen; Hapfelmeier, Siegfried; Ganal-Vonarburg, Stephanie C.; Macpherson, Andrew J. (2020). Mucosal or systemic microbiota exposures shape the B cell repertoire. Nature, 584(7820), pp. 274-278. Springer Nature 10.1038/s41586-020-2564-6
Healy, Marc E; Boege, Yannick; Hodder, Michael C; Böhm, Friederike; Malehmir, Mohsen; Scherr, Anna-Lena; Jetzer, Jasna; Chan, Lap Kwan; Parrotta, Rossella; Jacob, Kurt; Clerbaux, Laure-Alix; Kreutzer, Susanne; Campbell, Andrew; Gilchrist, Ella; Gilroy, Kathryn; Rodewald, Ann-Katrin; Honcharova-Biletska, Hanna; Schimmer, Roman; Vélez, Karelia; Büeler, Simone; ... (2020). MCL1 Is Required for Maintenance of Intestinal Homeostasis and Prevention of Carcinogenesis in Mice. Gastroenterology, 159(1), pp. 183-199. Elsevier 10.1053/j.gastro.2020.03.017
Begka, Christina; Pattaroni, Céline; Mooser, Catherine; Nancey, Stéphane; McCoy, Kathy D.; Velin, Dominique; Maillard, Michel H. (2020). Toll-Interacting Protein Regulates Immune Cell Infiltration and Promotes Colitis-Associated Cancer. iScience, 23(3), p. 100891. Elsevier 10.1016/j.isci.2020.100891
Martin, Kea; Touil, Ratiba; Kolb, Yeter; Cvijetic, Grozdan; Murakami, Kiichi; Israel, Laura; Duraes, Fernanda; Buffet, David; Glück, Anton; Niwa, Satoru; Bigaud, Marc; Junt, Tobias; Zamurovic, Natasa; Smith, Philip; McCoy, Kathy D.; Ohashi, Pamela S; Bornancin, Frédéric; Calzascia, Thomas (2019). Malt1 Protease Deficiency in Mice Disrupts Immune Homeostasis at Environmental Barriers and Drives Systemic T Cell-Mediated Autoimmunity. The journal of immunology, 203(11), pp. 2791-2806. American Association of Immunologists 10.4049/jimmunol.1900327
Moghadamrad, Sheida; Mohsin Hassan, Mohsin Hassan; McCoy, Kathleen; Kirundi, Jorum; Kellmann, Philipp; De Gottardi, Andrea (2019). Attenuated fibrosis in specific pathogen-free microbiota in experimental cholestasis- and toxin-induced liver injury. FASEB journal, 33(11), pp. 12464-12476. Federation of American Societies for Experimental Biology 10.1096/fj.201901113R
Uchimura, Yasuhiro; Fuhrer, Tobias; Li, Hai; Lawson, Melissa A.; Zimmermann, Michael; Yilmaz, Bahtiyar; Zindel, Joel; Ronchi, Francesca; Sorribas Olivera, Marcel; Hapfelmeier, Siegfried; Ganal-Vonarburg, Stephanie C.; Gomez de Agüero, Mercedes; McCoy, Kathleen D.; Sauer, Uwe; Macpherson, Andrew J. (2018). Antibodies Set Boundaries Limiting Microbial Metabolite Penetration and the Resultant Mammalian Host Response. Immunity, 49(3), 545-559.e5. Cell Press 10.1016/j.immuni.2018.08.004
Drobek, Ales; Moudra, Alena; Mueller, Daniel; Huranova, Martina; Horkova, Veronika; Pribikova, Michaela; Ivanek, Robert; Oberle, Susanne; Zehn, Dietmar; McCoy, Kathleen; Draber, Peter; Stepanek, Ondrej (2018). Strong homeostatic TCR signals induce formation of self-tolerant virtual memory CD8 T cells. The EMBO Journal, 37(14) EMBO Press 10.15252/embj.201798518
Treise, Irina; Huber, Eva M; Klein-Rodewald, Tanja; Heinemeyer, Wolfgang; Grassmann, Simon A; Basler, Michael; Adler, Thure; Rathkolb, Birgit; Helming, Laura; Andres, Christian; Klaften, Matthias; Landbrecht, Christina; Wieland, Thomas; Strom, Tim M; McCoy, Kathleen; Macpherson, Andrew; Wolf, Eckhard; Groettrup, Marcus; Ollert, Markus; Neff, Frauke; ... (2018). Defective immuno- and thymoproteasome assembly causes severe immunodeficiency. Scientific Reports, 8(1), p. 5975. Nature Publishing Group 10.1038/s41598-018-24199-0
Kohler, Andreas; Büchi, Isabel; Melin, Nicolas; Bayer, F.; McCoy, Kathleen; Candinas, Daniel; Keogh-Stroka, Deborah M. (2018). The IL-33/ST2 axes contributes to hepatocyte proliferation and promotes development of hepatocellular carcinoma. HPB : official journal of The International Hepato-Pancreato-Biliary Association, 20(Suppl. 2), S261-S261. Elsevier 10.1016/j.hpb.2018.06.205
Hebbandi Nanjundappa, Roopa; Ronchi, Francesca; Wang, Jinguo; Clemente-Casares, Xavier; Yamanouchi, Jun; Sokke Umeshappa, Channakeshava; Yang, Yang; Blanco, Jesús; Bassolas-Molina, Helena; Salas, Azucena; Khan, Hamza; Slattery, Robyn M; Wyss, Madeleine; Mooser, Catherine; Macpherson, Andrew; Sycuro, Laura K; Serra, Pau; McKay, Derek M; McCoy, Kathleen and Santamaria, Pere (2017). A Gut Microbial Mimic that Hijacks Diabetogenic Autoreactivity to Suppress Colitis. Cell, 171(3), 655-667.e17. Cell Press 10.1016/j.cell.2017.09.022
Garzetti, Debora; Brugiroux, Sandrine; Bunk, Boyke; Pukall, Rüdiger; McCoy, Kathleen; Macpherson, Andrew; Stecher, Bärbel (2017). High-Quality Whole-Genome Sequences of the Oligo-Mouse-Microbiota Bacterial Community. Genome Announcements, 5(42) American Society for Microbiology 10.1128/genomeA.00758-17
Mamantopoulos, Michail; Ronchi, Francesca; Van Hauwermeiren, Filip; Vieira-Silva, Sara; Yilmaz, Bahtiyar; Martens, Liesbet; Saeys, Yvan; Drexler, Stefan K; Yazdi, Amir S; Raes, Jeroen; Lamkanfi, Mohamed; McCoy, Kathleen; Wullaert, Andy (2017). Nlrp6- and ASC-Dependent Inflammasomes Do Not Shape the Commensal Gut Microbiota Composition. Immunity, 47(2), 339-348.e4. Cell Press 10.1016/j.immuni.2017.07.011
Cassano, Marco; Offner, Sandra; Planet, Evarist; Piersigilli, Alessandra; Jang, Suk Min; Henry, Hugues; Geuking, Markus; Mooser, Catherine; McCoy, Kathleen; Macpherson, Andrew; Trono, Didier (2017). Polyphenic trait promotes liver cancer in a model of epigenetic instability in mice. Hepatology, 66(1), pp. 235-251. Wiley Interscience 10.1002/hep.29182
Perruzza, Lisa; Gargari, Giorgio; Proiett, Michele; Fosso, Bruno; D’Erchia, Anna Maria; Faliti, Caterina Elisa; Rezzonico-Jost, Tanja; Scribano, Daniela; Maur, Laura; Colombo, Diego; Pellegrin, Giovanni; Moregol, Annalisa; Mooser, Catherine; Pesole, Graziano; Nicolett, Mauro; Norata, Giuseppe Danilo; Geuking, Markus; McCoy, Kathleen; Guglielmett, Simone and Grassi, Fabio (2017). T Follicular Helper Cells Promote a Beneficial Gut Ecosystem for Host Metabolic Homeostasis by sensing Microbiota-Derived Extracellular ATP. Cell reports, 18(11), pp. 2566-2575. Cell Press 10.1016/j.celrep.2017.02.061
De Riva, Alessandra; Wållberg, Maja; Ronchi, Francesca; Coulson, Richard; Sage, Andrew; Thorne, Lucy; Goodfellow, Ian; McCoy, Kathleen; Azuma, Miyuki; Cooke, Anne; Busch, Robert (2017). Regulation of type 1 diabetes development and B-cell activation in nonobese diabetic mice by early life exposure to a diabetogenic environment. PLoS ONE, 12(8), e0181964. Public Library of Science 10.1371/journal.pone.0181964
Gil-Cruz, Cristina; Perez-Shibayama, Christian; Onder, Lucas; Chai, Qian; Cupovic, Jovana; Cheng, Hung-Wei; Novkovic, Mario; Lang, Philipp A; Geuking, Markus; McCoy, Kathleen; Abe, Shinya; Cui, Guangwei; Ikuta, Koichi; Scandella, Elke; Ludewig, Burkhard (2016). Fibroblastic reticular cells regulate intestinal inflammation via IL-15-mediated control of group 1 ILCs. Nature immunology, 17(12), pp. 1388-1396. Macmillan Publishers Limited 10.1038/ni.3566
Brugiroux, Sandrine; Beutler, Markus; Pfann, Carina; Garzetti, Debora; Ruscheweyh, Hans-Joachim; Ring, Diana; Diehl, Manuel; Herp, Simone; Lötscher, Yvonne; Hussain, Saib; Bunk, Boyke; Pukall, Rüdiger; Huson, Daniel H; Münch, Philipp C; McHardy, Alice C; McCoy, Kathleen; Macpherson, Andrew; Loy, Alexander; Clavel, Thomas; Berry, David; ... (2016). Genome-guided design of a defined mouse microbiota that confers colonization resistance against Salmonella enterica serovar Typhimurium. Nature microbiology, 2, p. 16215. Springer Nature 10.1038/nmicrobiol.2016.215
Uchimura, Yasuhiro; Wyss, Madeleine; Brugiroux, Sandrine; Limenitakis, Julien Periclis Jean; Stecher, Bärbel; McCoy, Kathleen; Macpherson, Andrew (2016). Complete Genome Sequences of 12 Species of Stable Defined Moderately Diverse Mouse Microbiota 2. Genome Announcements, 4(5) American Society for Microbiology 10.1128/genomeA.00951-16
Gomez de Agüero Tamargo, Maria de la Mercedes; Ganal-Vonarburg, Stephanie C; Fuhrer, Tobias; Rupp, Sandra Carina; Uchimura, Yasuhiro; Li, Hai; Steinert, Anna; Heikenwalder, Mathias; Hapfelmeier, Siegfried Hektor; Sauer, Uwe; McCoy, Kathleen; Macpherson, Andrew (2016). The maternal microbiota drives early postnatal innate immune development. Science, 351(6279), pp. 1296-1302. American Association for the Advancement of Science 10.1126/science.aad2571
Brasseit, J.; Althaus-Steiner, E.; Faderl, M.; Dickgreber, N.; Saurer, L.; Genitsch, V.; Dolowschiak, T.; Li, Hai; Finke, D.; Hardt, W.-D.; McCoy, Kathleen; Macpherson, Andrew; Corazza, N.; Noti, M.; Mueller, C. (2016). CD4 T cells are required for both development and maintenance of disease in a new mouse model of reversible colitis. Mucosal immunology, 9(3), pp. 689-701. Nature Publishing Group 10.1038/mi.2015.93
Studer, Nicolas; Desharnais, Lyne; Beutler, Markus; Brugiroux, Sandrine; Terrazos Miani, Miguel Angel; Menin, Laure; Schürch, Christian; McCoy, Kathy D.; Kuehne, Sarah A.; Minton, Nigel P.; Stecher, Bärbel; Bernier-Latmani, Rizlan; Hapfelmeier, Siegfried Hektor (2016). Functional Intestinal Bile Acid 7α-Dehydroxylation by Clostridium scindens Associated with Protection from Clostridium difficile Infection in a Gnotobiotic Mouse Model. Frontiers in cellular and infection microbiology, 6(191), p. 191. Frontiers 10.3389/fcimb.2016.00191
Zaiss, Mario M; Rapin, Alexis; Lebon, Luc; Dubey, Lalit Kumar; Mosconi, Ilaria; Sarter, Kerstin; Piersigilli, Alessandra; Menin, Laure; Walker, Alan W; Rougemont, Jacques; Paerewijck, Oonagh; Geldhof, Peter; McCoy, Kathleen; Macpherson, Andrew; Croese, John; Giacomin, Paul R; Loukas, Alex; Junt, Tobias; Marsland, Benjamin J and Harris, Nicola L (2015). The Intestinal Microbiota Contributes to the Ability of Helminths to Modulate Allergic Inflammation. Immunity, 43(5), pp. 998-1010. Cell Press 10.1016/j.immuni.2015.09.012
Macpherson, Andrew; McCoy, Kathleen (2015). Independence Day for IgA. Immunity, 43(3), pp. 416-418. Cell Press 10.1016/j.immuni.2015.08.024
McCoy, Kathleen; Köller, Yasmin (2015). New developments providing mechanistic insight into the impact of the microbiota on allergic disease. Clinical immunology, 159(2), pp. 170-176. Elsevier 10.1016/j.clim.2015.05.007
Macpherson, Andrew; Köller, Yasmin; McCoy, Kathleen (2015). The bilateral responsiveness between intestinal microbes and IgA. Trends in immunology, 36(8), pp. 460-470. Elsevier 10.1016/j.it.2015.06.006
Mager, Lukas; Riether, Carsten; Schürch, Christian; Banz Wälti, Yara; Wasmer, Marie-Hélène Christin; Stuber Roos, Regula; Theocharides, Alexandre; Li, Xiaohong; Xia, Yu; Saito, Hirohisa; Nakae, Susumu; Baerlocher, Gabriela M.; Manz, Markus G; McCoy, Kathleen; Macpherson, Andrew; Ochsenbein, Adrian; Beutler, Bruce; Krebs, Philippe (2015). IL-33 signaling contributes to the pathogenesis of myeloproliferative neoplasms. Journal of clinical investigation, 125(7), pp. 2579-2591. American Society for Clinical Investigation 10.1172/JCI77347
Moghadamrad, Sheida; McCoy, Kathleen; Geuking, Markus; Sägesser, Hans; Kirundi, Jorum; Macpherson, Andrew; De Gottardi, Andrea (2015). Attenuated portal hypertension in germ-free mice: Function of bacterial flora on the development of mesenteric lymphatic and blood vessels. Hepatology, 61(5), pp. 1685-1695. Wiley Interscience 10.1002/hep.27698
Bornancin, Frédéric; Renner, Florian; Touil, Ratiba; Sic, Heiko; Kolb, Yeter; Touil-Allaoui, Ismahane; Rush, James S; Smith, Paul A; Bigaud, Marc; Junker-Walker, Ursula; Burkhart, Christoph; Dawson, Janet; Niwa, Satoru; Katopodis, Andreas; Nuesslein-Hildesheim, Barbara; Weckbecker, Gisbert; Zenke, Gerhard; Kinzel, Bernd; Traggiai, Elisabetta; Brenner, Dirk; ... (2015). Deficiency of MALT1 paracaspase activity results in unbalanced regulatory and effector T and B cell responses leading to multiorgan inflammation. Journal of immunology, 194(8), pp. 3723-3734. American Association of Immunologists 10.4049/jimmunol.1402254
Juillerat, Pascal; Peter, M; Macpherson, James; Slack, Emma; Patuto, Nicola; Cahenzli, Julia; Seibold, Frank Werner; McCoy, Kathleen; Macpherson, Andrew (February 2015). Measurement of functional blocade of TNF-alpha by anti-TNF agents is a stronger predictor than trough levels and anti-drug antibodies: 2-year prospective clinical data (Unpublished). In: European Crohn’s and colitis organization congress (ECCO). Barcelona. Februar 2015.
Macpherson, Andrew; McCoy, Kathleen (2015). Standardised animal models of host microbial mutualism. Mucosal immunology, 8(3), pp. 476-486. Nature Publishing Group 10.1038/mi.2014.113
Li, Hai; Limenitakis, Julien Periclis Jean; Fuhrer, Tobias; Geuking, Markus; Lawson, Melissa A; Wyss, Madeleine; Brugiroux, Sandrine; Keller, Irene; Macpherson, Jamie A; Rupp, Sandra; Stolp, Bettina; Stein, Jens Volker; Stecher, Bärbel; Sauer, Uwe; McCoy, Kathleen; Macpherson, Andrew (2015). The outer mucus layer hosts a distinct intestinal microbial niche. Nature communications, 6, p. 8292. Nature Publishing Group 10.1038/ncomms9292
Juillerat, Pascal; Andrew, Peter; Macpherson, James; Slack, Emma; Seibold, Frank Werner; Cahenzli, Julia; McCoy, Kathleen; Macpherson, Andrew (2015). Measurement of functional blocade of TNF-alpha by anti-TNF agents is a stronger predictor than trough levels and anti-drug antibodies: 2-year prospective clinical data. Gastroenterology, 148(4), pp. 850-1. Elsevier
McCoy, Kathleen (December 2014). Microbial colonisation in early-life impacts innate and adaptive immunity (Unpublished). In: British Society for Immunology Annual Congress. Brighton, UK. December 2014.
Proietti, Michele; Cornacchione, Vanessa; Rezzonico Jost, Tanja; Romagnani, Andrea; Faliti, Caterina Elisa; Perruzza, Lisa; Rigoni, Rosita; Radaelli, Enrico; Caprioli, Flavio; Preziuso, Silvia; Brannetti, Barbara; Thelen, Marcus; McCoy, Kathleen; Slack, Emma; Traggiai, Elisabetta; Grassi, Fabio (2014). ATP-gated ionotropic P2X7 receptor controls follicular T helper cell numbers in Peyer's patches to promote host-microbiota mutualism. Immunity, 41(5), pp. 789-801. Cell Press 10.1016/j.immuni.2014.10.010
Balmer, Maria L; Schürch, Christian; Saito, Yasuyuki; Geuking, Markus; Li, Hai; Cuenca, Miguelangel; Kovtonyuk, Larisa V; McCoy, Kathleen; Hapfelmeier, Siegfried; Ochsenbein, Adrian; Manz, Markus G; Slack, Emma; Macpherson, Andrew (2014). Microbiota-derived compounds drive steady-state granulopoiesis via MyD88/TICAM signaling. Journal of immunology, 193(10), pp. 5273-5283. American Association of Immunologists 10.4049/jimmunol.1400762
McCoy, Kathleen (November 2014). Microbial colonisation in early-life: impact on innate and adaptive immunity (Unpublished). In: Global Health Institute, EPFL Seminar Series. Lausanne, CH. November 2014.
Stefka, Andrew T; Feehley, Taylor; Tripathi, Prabhanshu; Qiu, Ju; McCoy, Kathleen; Mazmanian, Sarkis K; Tjota, Melissa Y; Seo, Goo-Young; Cao, Severine; Theriault, Betty R; Antonopoulos, Dionysios A; Zhou, Liang; Chang, Eugene B; Fu, Yang-Xin; Nagler, Cathryn R (2014). Commensal bacteria protect against food allergen sensitization. Proceedings of the National Academy of Sciences of the United States of America - PNAS, 111(36), pp. 13145-13150. National Academy of Sciences NAS 10.1073/pnas.1412008111
Malinka, Thomas; Keogh, Adrian; Kudira, Ramesh; Moghadamrad, Sheida; McCoy, Kathleen; Keogh-Stroka, Deborah M.; Candinas, Daniel; Beldi, Guido (September 2014). Liver regeneration is not impacted in the absence of intestinal microbiota (Unpublished). In: Schweizerische Gesellschaft für Gastroenterologie (SGG) - Schweizerische Gesellschaft für Viszeralchirurgie (SGVC) Annual Congress. Interlaken. 11.-12.9.2014.
Malinka, Thomas; Keogh, Adrian; Kudira, Ramesh; Moghadamrad, Sheida; McCoy, Kathleen; Keogh-Stroka, Deborah M.; Candinas, Daniel; Beldi, Guido (September 2014). Travel Award: Liver regeneration is not impacted in the absence of intestinal microbiota (Unpublished). In: Schweizerische Gesellschaft für Gastroenterologie (SGG) - Schweizerische Gesellschaft für Viszeralchirurgie (SGVC) Annual Congress. Interlaken. 11.-12.9.2014.
Chu, Derek K; Jimenez-Saiz, Rodrigo; Verschoor, Christopher P; Walker, Tina D; Goncharova, Susanna; Llop-Guevara, Alba; Shen, Pamela; Gordon, Melissa E; Barra, Nicole G; Bassett, Jennifer D; Kong, Joshua; Fattouh, Ramzi; McCoy, Kathleen; Bowdish, Dawn M; Erjefält, Jonas S; Pabst, Oliver; Humbles, Alison A; Kolbeck, Roland; Waserman, Susan and Jordana, Manel (2014). Indigenous enteric eosinophils control DCs to initiate a primary Th2 immune response in vivo. Journal of experimental medicine, 211(8), pp. 1657-1672. Rockefeller University Press 10.1084/jem.20131800
McCoy, Kathleen (July 2014). Microbial conditioning during early-life impact s immune regulation (Unpublished). In: 7th Seeon Conference ‘Microbiota, Probiota and Host’. Monastry Seeon/Chiemsee, Germany. July 2014.
McCoy, Kathleen (June 2014). Microbial conditioning during early-life impact s immune regulation (Unpublished). In: 2014 Prairie Infectious Immunology Meeting. Lake Hecla, Manitoba, Canada. June 2014.
Malinka, Thomas; Keogh, Adrian; Kudira, Ramesh; Moghadamrad, Sheida; McCoy, Kathleen; Keogh-Stroka, Deborah M.; Candinas, Daniel; Beldi, Guido (May 2014). Liver regeneration is not impacted in the absence of intestinal microbiota. (Unpublished). In: Annual meeting of the Swiss Surgical Society. Bern. 21.-23.05.2014.
Juillerat, Pascal; Andrew, Peter Michael; Macpherson, James; Slack, Emma; Cahenzli, Julia; Seibold, Frank Werner; McCoy, Kathleen; Macpherson, Andrew (May 2014). CD62L (L-Selectin) Shedding for Assessment of Functional Blockade of TNF-Alpha in Anti-TNF treated Inflammatory Bowel Disease Patients: Clinical Feasibility and Perspectives. Gastroenterology, 146(5), p. 239. Elsevier
Lécuyer, Emelyne; Rakotobe, Sabine; Lengliné-Garnier, Hélène; Lebreton, Corinne; Picard, Marion; Juste, Catherine; Fritzen, Rémi; Eberl, Gérard; McCoy, Kathleen; Macpherson, Andrew; Reynaud, Claude-Agnès; Cerf-Bensussan, Nadine; Gaboriau-Routhiau, Valérie (2014). Segmented filamentous bacterium uses secondary and tertiary lymphoid tissues to induce gut IgA and specific T helper 17 cell responses. Immunity, 40(4), pp. 608-620. Cell Press 10.1016/j.immuni.2014.03.009
Juillerat, Pascal; Andrew, Peter Michael; Macpherson, J; Slack, Emma; Patuto, Nicola; Cahenzli, Julia; McCoy, Kathleen; Macpherson, Andrew (February 2014). CD62L (L-selectin) shedding for assessment of functional blockade of TNF alpha in anti-TNF treated IBD patients: clinical feasibility and perspectives (DOP060). Journal of Crohn's & Colitis, 8(Suppl1), pp. 43-44. Elsevier 10.1016/S1873-9946(14)60085-4
McCoy, Kathleen (January 2014). Introduction to Gnotobiology (Unpublished). In: 10th Swiss Experimental Surgery Symposium. Bern, CH. January 2014.
Geuking, Markus; Köller, Yasmin; Rupp, Sandra; McCoy, Kathleen (2014). The interplay between the gut microbiota and the immune system. Gut microbes, 5(3), pp. 411-418. Landes Bioscience 10.4161/gmic.29330
Ronchi, Francesca; Rupp, Sandra; Steinert, Anna; Wyss, Madeleine; McCoy, Kathleen; Macpherson, Andrew (2014). Microbiota-mediated fine-tuning of the threshold of intestinal inflammasome activation in host-microbial mutualism (Unpublished). In: EMIG2014. Glasgow, UK.
Juillerat, Pascal; Andrew, Peter Michael; Macpherson, James; Slack, Emma; Cahenzli, Julia; Seibold, F.; McCoy, Kathleen; Macpherson, Andrew (2014). CD62L (L-selectin) shedding for assessment of functional blockade of TNF alpha in anti-TNF treated IBD patients: clinical feasibility and perspectives. United european gastroenterology journal, 2(1suppl), A45-A46. Sage
Juillerat, Pascal; Andrew, Peter Michael; Macpherson, James; Slack, Emma; Cahenzli, Julia; Seibold, Frank Werner; McCoy, Kathleen; Macpherson, Andrew (2014). CD62L (L-Selectin) Shedding for Assessment of Functional Blockade of TNF-Alpha in Anti-TNF treated Inflammatory Bowel Disease Patients: Clinical Feasibility and Perspectives. Swiss medical weekly, 144(Suppl206), 3S-3S. EMH Schweizerischer Ärzteverlag
Mosconi, I.; Geuking, Markus; Zaiss, M. M.; Massacand, Jonathan; Aschwanden, C.; Kwong Chung, Cheong Kwet Choy; McCoy, Kathleen; Harris, N. L. (2013). Intestinal bacteria induce TSLP to promote mutualistic T-cell responses. Mucosal immunology, 6(6), pp. 1157-1167. Nature Publishing Group 10.1038/mi.2013.12
Macpherson, Andrew; McCoy, Kathleen (2013). Stratification and compartmentalisation of immunoglobulin responses to commensal intestinal microbes. Seminars in immunology, 25(5), pp. 358-363. W.B. Saunders 10.1016/j.smim.2013.09.004
Cahenzli, Julia; Köller, Yasmin; Wyss, Madeleine; Geuking, Markus; McCoy, Kathleen (2013). Intestinal Microbial Diversity during Early-Life Colonization Shapes Long-Term IgE Levels. Cell host & microbe, 14(5), pp. 559-570. Cell Press 10.1016/j.chom.2013.10.004
Geuking, Markus B.; McCoy, Kathleen; Macpherson, Andrew J. (2013). Metabolites from intestinal microbes shape Treg. Cell research, 23(12), pp. 1339-1340. Nature Publishing Group 10.1038/cr.2013.125
Markle, J. G. M.; Frank, D. N.; Mortin-Toth, S.; Robertson, C. E.; Feazel, L. M.; Rolle-Kampczyk, U.; von Bergen, Melanie; McCoy, Kathleen; Macpherson, Andrew; Danska, J. S. (2013). Sex Differences in the Gut Microbiome Drive Hormone-Dependent Regulation of Autoimmunity. Science, 339(6123), pp. 1084-1088. American Association for the Advancement of Science 10.1126/science.1233521
Cahenzli, Julia; Balmer, Maria Luisa; McCoy, Kathleen (2012). Microbial-immune cross-talk and regulation of the immune system. Immunology, 138(1), pp. 12-22. Wiley-Blackwell 10.1111/j.1365-2567.2012.03624.x
Cecchini, Luca; Barmaz, Colette; Coloma Cea, Maria José; Baeschlin, Hannah; Etter, Julian; Netzer, Stefanie; Bregy, Leonie; Marchukov, Dmitrij; Fernandez Trigo, Nerea; Meier, Rachel; Hirschi, Jasmin; Wyss, Jacqueline; Wick, Andrina; Zingg, Joelle; Christensen, Sandro; Radan, Anda-Petronela; Etter, Annina; Müller, Martin; Kaess, Michael; Surbek, Daniel; ... (2023). The Bern Birth Cohort (BeBiCo) to study the development of the infant intestinal microbiota in a high-resource setting in Switzerland: rationale, design, and methods. BMC pediatrics, 23(1), p. 560. BioMed Central 10.1186/s12887-023-04198-5
Kohler, Andreas; Büchi, Isabel; Melin, Nicolas; Bayer, F.; McCoy, Kathleen; Candinas, Daniel; Keogh-Stroka, Deborah M. (2018). The IL-33/ST2 axes contributes to hepatocyte proliferation and promotes development of hepatocellular carcinoma. HPB : official journal of The International Hepato-Pancreato-Biliary Association, 20(Suppl. 2), S261-S261. Elsevier 10.1016/j.hpb.2018.06.205
Kudira, Ramesh; Malinka, Thomas; Kohler, Andreas; Dosch, Michel; Gomez de Agüero Tamargo, Maria de la Mercedes; Melin, Nicolas; Haegele, S; Starlinger, P; Maharjan, Niran; Saxena, Smita; Keogh, Adrian; Keogh-Stroka, Deborah M.; Candinas, Daniel; Beldi, Guido (2016). P2X1 regulated IL-22 secretion by innate lymphoid cells is required for efficient liver regeneration (Unpublished). In: Keystone Symposium. Vancouver. 29.01.2016.
Jordi, Sebastian Bruno Ulrich; Misselwitz, Benjamin (2024). Refining the Concept of Microscopic Colitis: HLA Signatures Discriminating Collagenous and Lymphocytic Colitis. Journal of Crohn's & colitis, 18(3), pp. 339-340. 10.1093/ecco-jcc/jjad211
Wyss, Jacqueline; Raselli, Tina; Wyss, Annika; Telzerow, Anja; Rogler, Gerhard; Krupka, Niklas; Yilmaz, Bahtiyar; Schmidt, Thomas S B; Misselwitz, Benjamin (2024). Development of non-alcoholic steatohepatitis is associated with gut microbiota but not with oxysterol enzymes CH25H, EBI2, or CYP7B1 in mice. BMC microbiology, 24(1), p. 69. BioMed Central 10.1186/s12866-024-03195-7
Cecchini, Luca; Barmaz, Colette; Coloma Cea, Maria José; Baeschlin, Hannah; Etter, Julian; Netzer, Stefanie; Bregy, Leonie; Marchukov, Dmitrij; Fernandez Trigo, Nerea; Meier, Rachel; Hirschi, Jasmin; Wyss, Jacqueline; Wick, Andrina; Zingg, Joelle; Christensen, Sandro; Radan, Anda-Petronela; Etter, Annina; Müller, Martin; Kaess, Michael; Surbek, Daniel; ... (2023). The Bern Birth Cohort (BeBiCo) to study the development of the infant intestinal microbiota in a high-resource setting in Switzerland: rationale, design, and methods. BMC pediatrics, 23(1), p. 560. BioMed Central 10.1186/s12887-023-04198-5
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Hassan, Mohsin; Juanola, Oriol; Huber, Stefania; Kellmann, Philipp; Zimmermann, Jakob; Lazzarini, Edoardo; Ganal-Vonarburg, Stephanie C; Gomez de Agüero, Mercedes; Moghadamrad, Sheida (2023). Absence of gut microbiota impairs depletion of Paneth cells but not goblet cells in germ-free Atoh1lox/lox VilCreERT2 mice. American journal of physiology. Gastrointestinal and liver physiology, 324(6), G426-G437. American Physiological Society 10.1152/ajpgi.00123.2022
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Maschmeyer, Patrick; Zimmermann, Jakob; Kühl, Anja Andrea (2021). Murine T-Cell Transfer Colitis as a Model for Inflammatory Bowel Disease. Methods in molecular biology, 2285, pp. 349-373. Springer 10.1007/978-1-0716-1311-5_26
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Zimmermann, Jakob (2020). Trash Your Agar Plates! Blood Stream Bacteria Are Now Quantified by in vivo Flow Cytometry. Cytometry. Part A, 97(9), pp. 869-871. Wiley 10.1002/cyto.a.24010
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Gronke, Konrad; Hernández, Pedro P.; Zimmermann, Jakob; Klose, Christoph S. N.; Kofoed-Branzk, Michael; Guendel, Fabian; Witkowski, Mario; Tizian, Caroline; Amann, Lukas; Schumacher, Fabian; Glatt, Hansruedi; Triantafyllopoulou, Antigoni; Diefenbach, Andreas (2019). Interleukin-22 protects intestinal stem cells against genotoxic stress. Nature, 566(7743), pp. 249-253. Macmillan Journals Ltd. 10.1038/s41586-019-0899-7
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