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Carlé, Caroline; Boucher, Delphine; Morelli, Luisa; Larue, Camille; Ovtchinnikova, Ekaterina; Battut, Louise; Boumessid, Kawthar; Airaud, Melvin; Quaranta-Nicaise, Muriel; Ravanat, Jean-Luc; Dietrich, Gilles; Menard, Sandrine; Eberl, Gérard; Barnich, Nicolas; Mas, Emmanuel; Carriere, Marie; Al Nabhani, Ziad; Barreau, Frédérick (2024). Correction: Perinatal foodborne titanium dioxide exposure-mediated dysbiosis predisposes mice to develop colitis through life. Particle and fibre toxicology, 21(1) BioMed Central 10.1186/s12989-024-00570-0
Jordi, Sebastian Bruno Ulrich; Misselwitz, Benjamin (2024). Refining the Concept of Microscopic Colitis: HLA Signatures Discriminating Collagenous and Lymphocytic Colitis. Journal of Crohn's & colitis, 18(3), pp. 339-340. 10.1093/ecco-jcc/jjad211
Wyss, Jacqueline; Raselli, Tina; Wyss, Annika; Telzerow, Anja; Rogler, Gerhard; Krupka, Niklas; Yilmaz, Bahtiyar; Schmidt, Thomas S B; Misselwitz, Benjamin (2024). Development of non-alcoholic steatohepatitis is associated with gut microbiota but not with oxysterol enzymes CH25H, EBI2, or CYP7B1 in mice. BMC microbiology, 24(1), p. 69. BioMed Central 10.1186/s12866-024-03195-7
Bai, Xiaopeng; De Palma, Giada; Boschetti, Elisa; Nishihara, Yuichiro; Lu, Jun; Shimbori, Chiko; Costanzini, Anna; Saqib, Zarwa; Kraimi, Narjis; Sidani, Sacha; Hapfelmeier, Siegfried; Macpherson, Andrew J; Verdu, Elena F; De Giorgio, Roberto; Collins, Stephen M; Bercik, Premysl (2024). Vasoactive intestinal polypeptide plays a key role in the microbial-neuroimmune control of intestinal motility. Cellular and molecular gastroenterology and hepatology, 17(3), pp. 383-398. Elsevier 10.1016/j.jcmgh.2023.11.012
Carlé, Caroline; Boucher, Delphine; Morelli, Luisa; Larue, Camille; Ovtchinnikova, Ekaterina; Battut, Louise; Boumessid, Kawthar; Airaud, Melvin; Quaranta-Nicaise, Muriel; Ravanat, Jean-Luc; Dietrich, Gilles; Menard, Sandrine; Eberl, Gérard; Barnich, Nicolas; Mas, Emmanuel; Carriere, Marie; Al Nabhani, Ziad; Barreau, Frédérick (2023). Perinatal foodborne titanium dioxide exposure-mediated dysbiosis predisposes mice to develop colitis through life. Particle and fibre toxicology, 20(1), p. 45. BioMed Central 10.1186/s12989-023-00555-5
Cecchini, Luca; Barmaz, Colette; Coloma Cea, Maria José; Baeschlin, Hannah; Etter, Julian; Netzer, Stefanie; Bregy, Leonie; Marchukov, Dmitrij; Fernandez Trigo, Nerea; Meier, Rachel; Hirschi, Jasmin; Wyss, Jacqueline; Wick, Andrina; Zingg, Joelle; Christensen, Sandro; Radan, Anda-Petronela; Etter, Annina; Müller, Martin; Kaess, Michael; Surbek, Daniel; ... (2023). The Bern Birth Cohort (BeBiCo) to study the development of the infant intestinal microbiota in a high-resource setting in Switzerland: rationale, design, and methods. BMC pediatrics, 23(1), p. 560. BioMed Central 10.1186/s12887-023-04198-5
Luo, Jinjin; Li, Jiaqi; Li, Peng; Liang, Xi; Hassan, Hozeifa Mohamed; Moreau, Richard; Li, Jun (2023). Acute-on-chronic liver failure: far to go-a review. Critical care (London, England), 27(1), p. 259. 10.1186/s13054-023-04540-4
Hassan, Mohsin; Juanola, Oriol; Huber, Stefania; Kellmann, Philipp; Zimmermann, Jakob; Lazzarini, Edoardo; Ganal-Vonarburg, Stephanie C; Gomez de Agüero, Mercedes; Moghadamrad, Sheida (2023). Absence of gut microbiota impairs depletion of Paneth cells but not goblet cells in germ-free Atoh1lox/lox VilCreERT2 mice. American journal of physiology. Gastrointestinal and liver physiology, 324(6), G426-G437. American Physiological Society 10.1152/ajpgi.00123.2022
Planchette, Arielle Louise; Schmidt, Cédric; Burri, Olivier; Gomez de Agüero, Mercedes; Radenovic, Aleksandra; Mylonas, Alessio; Extermann, Jérôme (2023). Optical imaging of the small intestine immune compartment across scales. Communications biology, 6(1), p. 352. Springer Nature 10.1038/s42003-023-04642-3
Jakob, Manuel O; Spari, Daniel; Sánchez Taltavull, Daniel; Salm, Lilian; Yilmaz, Bahtiyar; Doucet Ladevèze, Rémi; Mooser, Catherine; Pereyra, David; Ouyang, Ye; Schmidt, Theresa; Mattiola, Irene; Starlinger, Patrick; Stroka, Deborah; Tschan, Franziska; Candinas, Daniel; Gasteiger, Georg; Klose, Christoph S N; Diefenbach, Andreas; Gomez de Agüero, Mercedes and Beldi, Guido (2023). ILC3s restrict the dissemination of intestinal bacteria to safeguard liver regeneration after surgery. Cell reports, 42(3), p. 112269. Cell Press 10.1016/j.celrep.2023.112269
Birchenough, George M H; Schroeder, Bjoern O; Sharba, Sinan; Arike, Liisa; Recktenwald, Christian V; Puértolas-Balint, Fabiola; Subramani, Mahadevan V; Hansson, Karl T; Yilmaz, Bahtiyar; Lindén, Sara K; Bäckhed, Fredrik; Hansson, Gunnar C (2023). Muc2-dependent microbial colonization of the jejunal mucus layer is diet sensitive and confers local resistance to enteric pathogen infection. Cell reports, 42(2), p. 112084. Cell Press 10.1016/j.celrep.2023.112084
Papotto, Pedro H; Yilmaz, Bahtiyar; Pimenta, Gonçalo; Mensurado, Sofia; Cunha, Carolina; Fiala, Gina J; Gomes da Costa, Daniel; Gonçalves-Sousa, Natacha; Chan, Brian H K; Blankenhaus, Birte; Domingues, Rita G; Carvalho, Tânia; Hepworth, Matthew R; Macpherson, Andrew J; Allen, Judith E; Silva-Santos, Bruno (2023). Maternal γδ T cells shape offspring pulmonary type 2 immunity in a microbiota-dependent manner. Cell reports, 42(2), p. 112074. Cell Press 10.1016/j.celrep.2023.112074
Wang, Renying; Zhang, Peijing; Wang, Jingjing; Ma, Lifeng; E, Weigao; Suo, Shengbao; Jiang, Mengmeng; Li, Jiaqi; Chen, Haide; Sun, Huiyu; Fei, Lijiang; Zhou, Ziming; Zhou, Yincong; Chen, Yao; Zhang, Weiqi; Wang, Xinru; Mei, Yuqing; Sun, Zhongyi; Yu, Chengxuan; Shao, Jikai; ... (2023). Construction of a cross-species cell landscape at single-cell level. Nucleic acids research, 51(2), pp. 501-516. Oxford University Press 10.1093/nar/gkac633
Chandiwana, Panashe; Munjoma, Privilege Tendai; Mazhandu, Arthur John; Li, Jiaqi; Bärtschi, Isabel; Wyss, Jacqueline; Jordi, Sebastian Bruno Ulrich; Mazengera, Lovemore Ronald; Yilmaz, Bahtiyar; Misselwitz, Benjamin; Duri, Kerina (2023). Antenatal gut microbiome profiles and effect on pregnancy outcome in HIV infected and HIV uninfected women in a resource limited setting. BMC microbiology, 23(1), p. 4. BioMed Central 10.1186/s12866-022-02747-z
Matute, Juan D; Duan, Jinzhi; Flak, Magdalena B; Griebel, Paul; Tascon-Arcila, Jose A; Doms, Shauni; Hanley, Thomas; Antanaviciute, Agne; Gundrum, Jennifer; Mark Welch, Jessica L; Sit, Brandon; Abtahi, Shabnam; Fuhler, Gwenny M; Grootjans, Joep; Tran, Florian; Stengel, Stephanie T; White, James R; Krupka, Niklas; Haller, Dirk; Clare, Simon; ... (2023). Intelectin-1 binds and alters the localization of the mucus barrier-modifying bacterium Akkermansia muciniphila. The Journal of experimental medicine, 220(1) Rockefeller Univ. Press 10.1084/jem.20211938
Kennedy, Katherine M; de Goffau, Marcus C; Perez-Muñoz, Maria Elisa; Arrieta, Marie-Claire; Bäckhed, Fredrik; Bork, Peer; Braun, Thorsten; Bushman, Frederic D; Dore, Joel; de Vos, Willem M; Earl, Ashlee M; Eisen, Jonathan A; Elovitz, Michal A; Ganal-Vonarburg, Stephanie C; Gänzle, Michael G; Garrett, Wendy S; Hall, Lindsay J; Hornef, Mathias W; Huttenhower, Curtis; Konnikova, Liza; ... (2023). Questioning the fetal microbiome illustrates pitfalls of low-biomass microbial studies. Nature, 613(7945), pp. 639-649. Macmillan Journals Ltd. 10.1038/s41586-022-05546-8
Marchukov, Dmitrij; Li, Jiaqi; Juillerat, Pascal; Misselwitz, Benjamin; Yilmaz, Bahtiyar (2023). Benchmarking microbial DNA enrichment protocols from human intestinal biopsies. Frontiers in genetics, 14(1184473), p. 1184473. Frontiers Media SA 10.3389/fgene.2023.1184473
Remund, Barblin; Yilmaz, Bahtiyar; Sokollik, Christiane (2023). D-Lactate: Implications for Gastrointestinal Diseases. Children, 10(6), p. 945. MDPI 10.3390/children10060945
Munjoma, Privilege Tendai; Chandiwana, Panashe; Wyss, Jacqueline; Mazhandu, Arthur John; Jordi, Sebastian Bruno Ulrich; Gutsire, Rutendo; Katsidzira, Leolin; Yilmaz, Bahtiyar; Misselwitz, Benjamin; Duri, Kerina (2023). Immune activation and inflammation in lactating women on combination antiretroviral therapy: role of gut dysfunction and gut microbiota imbalance. Frontiers in immunology, 14(1280262), p. 1280262. Frontiers Research Foundation 10.3389/fimmu.2023.1280262
Yilmaz, Bahtiyar; Fuhrer, Tobias; Morgenthaler, Deborah; Krupka, Niklas; Wang, Daoming; Spari, Daniel; Candinas, Daniel; Misselwitz, Benjamin; Beldi, Guido; Sauer, Uwe; Macpherson, Andrew J (2022). Plasticity of the adult human small intestinal stoma microbiota. Cell host & microbe, 30(12), 1773-1787.e6. Cell Press 10.1016/j.chom.2022.10.002
Jordi, Sebastian Bruno Ulrich; Lang, Brian Matthew; Wyss, Jacqueline; Auschra, Bianca; Yilmaz, Bahtiyar; Krupka, Niklas; Greuter, Thomas; Schreiner, Philipp; Biedermann, Luc; Preisig, Martin; von Känel, Roland; Rogler, Gerhard; Begré, Stefan; Misselwitz, Benjamin (2022). The personality traits activity, self-reproach, and negative affect jointly predict clinical recurrence, depressive symptoms, and low quality of life in inflammatory bowel disease patients. Journal of gastroenterology, 57(11), pp. 848-866. Springer 10.1007/s00535-022-01902-7
Schneider, Romano; Kraljević, Marko; Peterli, Ralph; Rohm, Theresa V; Bosch, Angela J T; Low, Andy J Y; Keller, Lena; AlAsfoor, Shefaa; Häfliger, Simon; Yilmaz, Bahtiyar; Peterson, Caspar J; Lazaridis, Ioannis I; Vonaesch, Pascale; Delko, Tarik; Cavelti-Weder, Claudia (2022). Roux-en-Y gastric bypass with a long versus a short biliopancreatic limb improves weight loss and glycemic control in obese mice. Surgery for obesity and related diseases, 18(11), pp. 1286-1297. Elsevier 10.1016/j.soard.2022.06.286
Jeckel, Adriana M.; Beran, Franziska; Züst, Tobias; Younkin, Gordon; Petschenka, Georg; Pokharel, Prayan; Dreisbach, Domenic; Ganal-Vonarburg, Stephanie Christine; Robert, Christelle Aurélie Maud (2022). Metabolization and sequestration of plant specialized metabolites in insect herbivores: Current and emerging approaches. Frontiers in physiology, 13(1001032), p. 1001032. Frontiers Research Foundation 10.3389/fphys.2022.1001032
Perruzza, Lisa; Strati, Francesco; Raneri, Matteo; Li, Hai; Gargari, Giorgio; Rezzonico-Jost, Tanja; Palatella, Martina; Kwee, Ivo; Morone, Diego; Seehusen, Frauke; Sonego, Paolo; Donati, Claudio; Franceschi, Pietro; Macpherson, Andrew J; Guglielmetti, Simone; Greiff, Victor; Grassi, Fabio (2022). Apyrase-mediated amplification of secretory IgA promotes intestinal homeostasis. Cell reports, 40(3), p. 111112. Cell Press 10.1016/j.celrep.2022.111112
Ignacio, Aline; Shah, Kathleen; Bernier-Latmani, Jeremiah; Köller, Yasmin; Coakley, Gillian; Moyat, Mati; Hamelin, Romain; Armand, Florence; Wong, Nick C; Ramay, Hena; Thomson, Carolyn A; Burkhard, Regula; Wang, Haozhe; Dufour, Antoine; Geuking, Markus B; McDonald, Braedon; Petrova, Tatiana V; Harris, Nicola L; McCoy, Kathy D (2022). Small intestinal resident eosinophils maintain gut homeostasis following microbial colonization. Immunity, 55(7), 1250-1267.e12. Elsevier 10.1016/j.immuni.2022.05.014
Rohm, Theresa V; Keller, Lena; Bosch, Angela J T; AlAsfoor, Shefaa; Baumann, Zora; Thomas, Amandine; Wiedemann, Sophia J; Steiger, Laura; Dalmas, Elise; Wehner, Josua; Rachid, Leila; Mooser, Catherine; Yilmaz, Bahtiyar; Fernandez Trigo, Nerea; Jauch, Annaise J; Wueest, Stephan; Konrad, Daniel; Henri, Sandrine; Niess, Jan H; Hruz, Petr; ... (2022). Targeting colonic macrophages improves glycemic control in high-fat diet-induced obesity. Communications biology, 5(1), p. 370. Springer Nature 10.1038/s42003-022-03305-z
Shmeleva, Evgeniya V; Gomez de Agüero, Mercedes; Wagner, Josef; Enright, Anton J; Macpherson, Andrew J; Ferguson, Brian J; Smith, Geoffrey L (2022). Smallpox vaccination induces a substantial increase in commensal skin bacteria that promote pathology and influence the host response. PLoS pathogens, 18(4), e1009854. Public Library of Science 10.1371/journal.ppat.1009854
Mossad, Omar; Batut, Bérénice; Yilmaz, Bahtiyar; Dokalis, Nikolaos; Mezö, Charlotte; Nent, Elisa; Nabavi, Lara Susann; Mayer, Melanie; Maron, Feres José Mocayar; Buescher, Joerg M; Gomez de Agüero, Mercedes; Szalay, Antal; Lämmermann, Tim; Macpherson, Andrew J; Ganal-Vonarburg, Stephanie C; Backofen, Rolf; Erny, Daniel; Prinz, Marco; Blank, Thomas (2022). Gut microbiota drives age-related oxidative stress and mitochondrial damage in microglia via the metabolite N6-carboxymethyllysine. Nature neuroscience, 25(3), pp. 295-305. Nature America 10.1038/s41593-022-01027-3
Fregolente, L.G.; Warncke, J.D.; van der Meer, J.; Schmidt, M.; Khatami, R.; Macpherson, A.J.; Yilmaz, B.; Bassetti, C.L.A. (2022). SPHYNCS: Gut microbiota composition is different in Narcolepsy type 1 and Narcolepsy Borderland. Sleep medicine, 100, S167. Elsevier 10.1016/j.sleep.2022.05.452
Chandiwana, Panashe; Munjoma, Privilege T; Mazhandu, Arthur J; Mazengera, Lovemore R; Misselwitz, Benjamin; Jordi, Sebastian B U; Yilmaz, Bahtiyar; Duri, Kerina (2022). Antenatal and postpartum immunological markers levels in women with HIV infection and malnutrition in a low resource setting: A pilot study. European journal of inflammation, 20, 1721727X2211392. Sage 10.1177/1721727X221139261
Sankowski, Roman; Ahmari, Jasmin; Mezö, Charlotte; Hrabě de Angelis, Anna Lena; Fuchs, Vidmante; Utermöhlen, Olaf; Buch, Thorsten; Blank, Thomas; Gomez de Agüero, Mercedes; Macpherson, Andrew J; Erny, Daniel (2021). Commensal microbiota divergently affect myeloid subsets in the mammalian central nervous system during homeostasis and disease. The EMBO journal, 40(23), e108605. EMBO Press 10.15252/embj.2021108605
Sánchez-Taltavull, Daniel; Castelo-Székely, Violeta; Murugan, Shaira; Hamley, Jonathan I. D.; Rollenske, Tim; Ganal-Vonarburg, Stephanie C.; Büchi, Isabel; Keogh, Adrian; Li, Hai; Salm, Lilian; Spari, Daniel; Yilmaz, Bahtiyar; Zimmermann, Jakob; Gerfin, Michael; Roldan, Edgar; Beldi, Guido (2021). Regular testing of asymptomatic healthcare workers identifies cost-efficient SARS-CoV-2 preventive measures. PLoS ONE, 16(11), e0258700. Public Library of Science 10.1371/journal.pone.0258700
Erny, Daniel; Dokalis, Nikolaos; Mezö, Charlotte; Castoldi, Angela; Mossad, Omar; Staszewski, Ori; Frosch, Maximilian; Villa, Matteo; Fuchs, Vidmante; Mayer, Arun; Neuber, Jana; Sosat, Janika; Tholen, Stefan; Schilling, Oliver; Vlachos, Andreas; Blank, Thomas; Gomez de Agüero, Mercedes; Macpherson, Andrew J; Pearce, Edward J and Prinz, Marco (2021). Microbiota-derived acetate enables the metabolic fitness of the brain innate immune system during health and disease. Cell metabolism, 33(11), 2260-2276.e7. Elsevier 10.1016/j.cmet.2021.10.010
Aswendt, Markus; Green, Claudia; Sadler, Rebecca; Llovera, Gemma; Dzikowski, Lauren; Heindl, Steffanie; Gomez de Agüero, Mercedes; Diedenhofen, Michael; Vogel, Stefanie; Wieters, Frederique; Wiedermann, Dirk; Liesz, Arthur; Hoehn, Mathias (2021). The gut microbiota modulates brain network connectivity under physiological conditions and after acute brain ischemia. iScience, 24(10), p. 103095. Elsevier 10.1016/j.isci.2021.103095
Rollenske, Tim; Burkhalter, Sophie; Muerner, Lukas; von Gunten, Stephan; Lukasiewicz, Jolanta; Wardemann, Hedda; Macpherson, Andrew J. (2021). Parallelism of intestinal secretory IgA shapes functional microbial fitness. Nature, 598(7882), pp. 657-661. Springer Nature 10.1038/s41586-021-03973-7
Stehle, Christina; Rückert, Timo; Fiancette, Rémi; Gajdasik, Dominika W; Willis, Claire; Ulbricht, Carolin; Durek, Pawel; Mashreghi, Mir-Farzin; Finke, Daniela; Hauser, Anja Erika; Withers, David R; Chang, Hyun-Dong; Zimmermann, Jakob; Romagnani, Chiara (2021). T-bet and RORα control lymph node formation by regulating embryonic innate lymphoid cell differentiation. Nature immunology, 22(10), pp. 1231-1244. Nature Publishing Group 10.1038/s41590-021-01029-6
Yilmaz, Bahtiyar; Ruckstuhl, Lisa; Müllhaupt, Beat; Magenta, Lorenzo; Kuster, Melanie Harrer; Clerc, Olivier; Torgler, Ralph; Semmo, Nasser (2021). Pilot Sub-Study of the Effect of Hepatitis C Cure by Glecaprevir/Pibrentasvir on the Gut Microbiome of Patients with Chronic Hepatitis C Genotypes 1 to 6 in the Mythen Study. Pharmaceuticals, 14(9) MDPI 10.3390/ph14090931
Papotto, Pedro H; Yilmaz, Bahtiyar; Silva-Santos, Bruno (2021). Crosstalk between γδ T cells and the microbiota. Nature microbiology, 6(9), pp. 1110-1117. Springer Nature 10.1038/s41564-021-00948-2
Denoth, Luisa; Juillerat, Pascal; Kremer, Andreas E; Rogler, Gerhard; Scharl, Michael; Yilmaz, Bahtiyar; Bluemel, Sena (2021). Modulation of the Mucosa-Associated Microbiome Linked to the PTPN2 Risk Gene in Patients with Primary Sclerosing Cholangitis and Ulcerative Colitis. Microorganisms, 9(8) MDPI 10.3390/microorganisms9081752
Deibel, Ansgar; Deng, Lu; Cheng, Chih-Yuan; Schlander, Michael; Ran, Tao; Lang, Brian; Krupka, Niklas; Beerenwinkel, Niko; Rogler, Gerhard; Wiest, Reiner; Sonnenberg, Amnon; Poleszczuk, Jan; Misselwitz, Benjamin (2021). Evaluating key characteristics of ideal colorectal cancer screening modalities: the microsimulation approach. Gastrointestinal endoscopy, 94(2), 379-390.e7. Elsevier 10.1016/j.gie.2021.02.013
Caparrós, Esther; Wiest, Reiner; Scharl, Michael; Rogler, Gerhard; Gutiérrez Casbas, Ana; Yilmaz, Bahtiyar; Wawrzyniak, Marcin; Francés, Rubén (2021). Dysbiotic microbiota interactions in Crohn's disease. Gut microbes, 13(1), p. 1949096. Landes Bioscience 10.1080/19490976.2021.1949096
Jordi, Sebastian Bruno Ulrich; Botte, Federica; Lang, Brian Matthew; Greuter, Thomas; Krupka, Niklas; Auschra, Bianca; Schreiner, Philipp; Sulz, Michael Christian; Biedermann, Luc; von Känel, Roland; Rogler, Gerhard; Begré, Stefan; Misselwitz, Benjamin (2021). Type D personality is associated with depressive symptoms and clinical activity in inflammatory bowel disease. Alimentary pharmacology & therapeutics, 54(1), pp. 53-67. Wiley-Blackwell 10.1111/apt.16365
Zhang, Yawen; Feng, Lijun; Wang, Xin; Fox, Mark; Luo, Liang; Du, Lijun; Chen, Binrui; Chen, Xiaoli; He, Huiqin; Zhu, Shuwen; Hu, Zhefang; Chen, Shujie; Long, Yanqin; Zhu, Yubin; Xu, Li; Deng, Yanyong; Misselwitz, Benjamin; Lang, Brian M; Yilmaz, Bahtiyar; Kim, John J; ... (2021). Low fermentable oligosaccharides, disaccharides, monosaccharides, and polyols diet compared with traditional dietary advice for diarrhea-predominant irritable bowel syndrome: a parallel-group, randomized controlled trial with analysis of clinical and microbiological factors associated with patient outcomes. The American journal of clinical nutrition, 113(6), pp. 1531-1545. Oxford University Press 10.1093/ajcn/nqab005
Kalbermatter, Cristina Lisa; Fernandez Trigo, Nerea; Christensen, Sandro; Ganal-Vonarburg, Stephanie Christine (2021). Maternal Microbiota, Early Life Colonization and Breast Milk Drive Immune Development in the Newborn. Frontiers in immunology, 12(683022), p. 683022. Frontiers Research Foundation 10.3389/fimmu.2021.683022
Maschmeyer, Patrick; Zimmermann, Jakob; Kühl, Anja Andrea (2021). Murine T-Cell Transfer Colitis as a Model for Inflammatory Bowel Disease. Methods in molecular biology, 2285, pp. 349-373. Springer 10.1007/978-1-0716-1311-5_26
Zimmermann, Jakob (2021). Evaluation of Cytokine Production at the Single Cell Level by Flow Cytometry Upon Polyclonal Stimulation. Methods in molecular biology, 2285, pp. 111-119. Springer 10.1007/978-1-0716-1311-5_9
Yilmaz, Bahtiyar; Mooser, Catherine; Keller, Irene; Li, Hai; Zimmermann, Jakob; Bosshard, Lars; Fuhrer, Tobias; Gomez de Agüero, Mercedes; Fernandez Trigo, Nerea; Tschanz-Lischer, Heidi; Limenitakis, Julien P.; Hardt, Wolf-Dietrich; McCoy, Kathleen; Stecher, Bärbel; Excoffier, Laurent; Sauer, Uwe; Ganal-Vonarburg, Stephanie C.; Macpherson, Andrew J. (2021). Long-term evolution and short-term adaptation of microbiota strains and sub-strains in mice. Cell host & microbe, 29(4), 650-663.e9. Cell Press 10.1016/j.chom.2021.02.001
Colombo, Alessio Vittorio; Sadler, Rebecca Katie; Llovera, Gemma; Singh, Vikramjeet; Roth, Stefan; Heindl, Steffanie; Sebastian Monasor, Laura; Verhoeven, Aswin; Peters, Finn; Parhizkar, Samira; Kamp, Frits; Gomez de Aguero, Mercedes; Macpherson, Andrew; Winkler, Edith; Herms, Jochen; Benakis, Corinne; Dichgans, Martin; Steiner, Harald; Giera, Martin; Haass, Christian; ... (2021). Microbiota-derived short chain fatty acids modulate microglia and promote Aβ plaque deposition. eLife, 10 eLife Sciences Publications 10.7554/eLife.59826
Juanola, Oriol; Hassan, Mohsin; Kumar, Pavitra; Yilmaz, Bahtiyar; Keller, Irene; Simillion, Cedric; Engelmann, Cornelius; Tacke, Frank; Dufour, Jean-François; De Gottardi, Andrea; Moghadamrad, Sheida (2021). Intestinal microbiota drives cholestasis-induced specific hepatic gene expression patterns. Gut microbes, 13(1), pp. 1-20. Taylor & Francis Group 10.1080/19490976.2021.1911534
Singh, Sumnima; Thompson, Jessica A; Yilmaz, Bahtiyar; Li, Hai; Weis, Sebastian; Sobral, Daniel; Truglio, Mauro; Aires da Silva, Frederico; Aguiar, Sandra; Carlos, Ana Rita; Rebelo, Sofia; Cardoso, Silvia; Gjini, Erida; Nuñez, Gabriel; Soares, Miguel P (2021). Loss of α-gal during primate evolution enhanced antibody-effector function and resistance to bacterial sepsis. Cell host & microbe, 29(3), 347-361.e12. Cell Press 10.1016/j.chom.2020.12.017
Rogler, Gerhard; Scharl, Michael; Spalinger, Marianne; Yilmaz, Bahtiyar; Zaugg, Michael; Hersberger, Martin; Schreiner, Philipp; Biedermann, Luc; Herfarth, Hans (2021). Diet and Inflammatory Bowel Disease: What Quality Standards Should Be Applied in Clinical and Laboratory Studies? Molecular nutrition & food research, 65(5), e2000514. Wiley 10.1002/mnfr.202000514
Bravo, Francisco; Macpherson, Jamie A; Slack, Emma; Patuto, Nicola; Cahenzli, Julia; McCoy, Kathy D.; Macpherson, Andrew J.; Juillerat, Pascal (2021). Prospective Validation of CD-62L (L-Selectin) as Marker of Durable Response to Infliximab Treatment in Patients With Inflammatory Bowel Disease: A 5-Year Clinical Follow-up. Clinical and translational gastroenterology, 12(2), e00298. Wolters Kluwer Health 10.14309/ctg.0000000000000298
Ledergerber, Martina; Lang, Brian M; Heinrich, Henriette; Biedermann, Luc; Begré, Stefan; Zeitz, Jonas; Krupka, Niklas; Rickenbacher, Andreas; Turina, Matthias; Greuter, Thomas; Schreiner, Philipp; Roth, René; Siebenhüner, Alexander; Vavricka, Stephan R; Rogler, Gerhard; Beerenwinkel, Niko; Misselwitz, Benjamin (2021). Abdominal pain in patients with inflammatory bowel disease: association with single-nucleotide polymorphisms prevalent in irritable bowel syndrome and clinical management. BMC gastroenterology, 21(1), p. 53. BioMed Central 10.1186/s12876-021-01622-x
Jackson, Matthew A; Pearson, Claire; Ilott, Nicholas E; Huus, Kelsey E; Hegazy, Ahmed N; Webber, Jonathan; Finlay, B Brett; Macpherson, Andrew J.; Powrie, Fiona; Lam, Lilian H (2021). Accurate identification and quantification of commensal microbiota bound by host immunoglobulins. Microbiome, 9(1), p. 33. BioMed Central 10.1186/s40168-020-00992-w
Pfister, Simona P.; Schären, Olivier P.; Beldi, Luca; Printz, Andrea; D. Notter, Matheus; Mukherjee, Mohana; Li, Hai; Limenitakis, Julien P.; Werren, Joel P.; Tandon, Disha; Cuenca, Miguelangel; Hagemann, Stefanie; Uster, Stephanie S.; Terrazos, Miguel A.; Gomez de Agüero, Mercedes; Schürch, Christian M.; M. Coelho, Fernanda; Curtiss, Roy; Slack, Emma; Balmer, Maria L; ... (2021). Author Correction: Uncoupling of invasive bacterial mucosal immunogenicity from pathogenicity. Nature Communications, 12(1), p. 798. Springer Nature 10.1038/s41467-021-21096-5
Feder, Susanne; Wiest, Reiner; Weiss, Thomas S; Aslanidis, Charalampos; Schacherer, Doris; Krautbauer, Sabrina; Liebisch, Gerhard; Buechler, Christa (2021). Proprotein convertase subtilisin/kexin type 9 (PCSK9) levels are not associated with severity of liver disease and are inversely related to cholesterol in a cohort of thirty eight patients with liver cirrhosis. Lipids in health and disease, 20(1), p. 6. BioMed Central 10.1186/s12944-021-01431-x
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Rupp, Sandra (2014). Impact of microbes on B cell development (Unpublished). In: 26th Meeting for Swiss PhD students in Immunology.
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Cahenzli, Julia (April 2013). Neonatal bacterial colonisation imprints long-term Immunoglobulin E levels (Unpublished). In: Annual Meeting of the SSAI and SSP. Bern Switzerland. April 2013.
Wyss, Jacqueline; Raselli, Tina; Wyss, Annika; Telzerov, Anja; Rogler, Gerhard; Krupka, Niklas; Yilmaz, Bahtiyar; Schmidt, Thomas SB; Misselwitz, Benjamin (2 December 2022). Development of non-alcoholic steatohepatitis is associated with gut microbiota but not oxysterol synthesis (bioRxiv). Cold Spring Harbor Laboratory 10.1101/2022.12.02.518833
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