A human-horse comparative map based on equine BAC end sequences

Leeb, Tosso; Vogl, Claus; Zhu, Baoli; de Jong, Pieter J; Binns, Matthew M; Chowdhary, Bhanu P; Scharfe, Maren; Jarek, Michael; Nordsiek, Gabriele; Schrader, Frank; Blöcker, Helmut (2006). A human-horse comparative map based on equine BAC end sequences. Genomics, 87(6), pp. 772-6. San Diego, Calif.: Elsevier 10.1016/j.ygeno.2006.03.002

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In an effort to increase the density of sequence-based markers for the horse genome we generated 9473 BAC end sequences (BESs) from the CHORI-241 BAC library with an average read length of 677 bp. BLASTN searches with the BESs revealed 4036 meaningful hits (E <or= 10(-5)) in the human genome that provide useful markers for the human-horse comparative map. The 4036 BLASTN hits allowed the anchoring of 3079 BAC clones to the human genome, on average one corresponding equine BAC clone per megabase of human DNA. We used the BLASTN anchored BESs for an in silico prediction of the gene content and chromosome assignment of comparatively mapped equine BAC clones. As a first verification of our in silico mapping strategy we placed 19 equine BESs with matches to HSA6 onto the RH map. All markers were assigned to the predicted localizations on ECA10, ECA20, and ECA31, respectively.

Item Type:

Journal Article (Original Article)

Division/Institute:

05 Veterinary Medicine > Department of Clinical Research and Veterinary Public Health (DCR-VPH) > Institute of Genetics

UniBE Contributor:

Leeb, Tosso

ISSN:

0888-7543

Publisher:

Elsevier

Language:

English

Submitter:

Factscience Import

Date Deposited:

04 Oct 2013 14:45

Last Modified:

04 May 2014 23:13

Publisher DOI:

10.1016/j.ygeno.2006.03.002

PubMed ID:

16603334

Web of Science ID:

000238168400009

URI:

https://boris.unibe.ch/id/eprint/18465 (FactScience: 608)

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