Dynamic Covalent Bonds in the Ebselen Class of Antioxidants Probed by X-ray Quantum Crystallography.

Singh, Ashi; Avinash, Kiran; Malaspina, Lorraine A; Banoo, Masoumeh; Alhameedi, Khidhir; Jayatilaka, Dylan; Grabowsky, Simon; Thomas, Sajesh Pynadath (2024). Dynamic Covalent Bonds in the Ebselen Class of Antioxidants Probed by X-ray Quantum Crystallography. Chemistry: a European journal, 30(14), e202303384. Wiley 10.1002/chem.202303384

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Dynamic bonds are essential structural ingredients of dynamic covalent chemistry that involve reversible cleavage and formation of bonds. Herein, we explore the electronic characteristics of Se-N bonds in the organo-selenium antioxidant ebselen and its derivatives for their propensity to function as dynamic covalent bonds by employing high-resolution X-ray quantum crystallography and complementary computational studies. An analysis of the experimentally reconstructed X-ray wavefunctions reveals the salient electronic features of the Se-N bonds with very low electron density localized at the bonding region and a positive Laplacian value at the bond critical point. Bond orders and percentage covalency and ionicity estimated from the X-ray wavefunctions, along with localized orbital locator (LOL) and electron localization function (ELF) analyses show that the Se-N bond is unique in its closed shell-like features, despite being a covalent bond. Time-dependent DFT calculations simulate the cleavage of Se-N bonds in ebselen in the excited state, further substantiating their nature as dynamic bonds.

Item Type:

Journal Article (Original Article)

Division/Institute:

08 Faculty of Science > Department of Chemistry, Biochemistry and Pharmaceutical Sciences (DCBP)

UniBE Contributor:

Malaspina, Lorraine, Grabowsky, Simon

Subjects:

500 Science > 570 Life sciences; biology
500 Science > 540 Chemistry

ISSN:

1521-3765

Publisher:

Wiley

Language:

English

Submitter:

Pubmed Import

Date Deposited:

03 Jan 2024 16:31

Last Modified:

10 Mar 2024 00:15

Publisher DOI:

10.1002/chem.202303384

PubMed ID:

38126954

Uncontrolled Keywords:

Dynamic covalent bond Organic selenium Quantum crystallography X-ray wavefunction bonding analysis

BORIS DOI:

10.48350/190667

URI:

https://boris.unibe.ch/id/eprint/190667

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