Atkinson, Andrew

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Moret, Fabienne; Marschall, Jonas; Atkinson, Andrew; Farag, Sarah; Zimmerli, Stefan; Pabst, Thomas; Sommerstein, Rami (2021). Characteristics of respiratory virus infections in autologous hematopoietic stem cell transplantation patients, a prospective study, Bern, Switzerland, 2015-2017. Infectious diseases, 53(4), pp. 274-280. Taylor & Francis 10.1080/23744235.2021.1871642

Atkinson, Andrew; Eisenring, Marie-Christine; Troillet, Nicolas; Kuster, Stefan P; Widmer, Andreas; Zwahlen, Marcel; Marschall, Jonas (2021). Surveillance quality correlates with surgical site infection rates in knee and hip arthroplasty and colorectal surgeries: A call to action to adjust reporting of SSI rates. (In Press). Infection control and hospital epidemiology, pp. 1-7. Cambridge University Press 10.1017/ice.2021.14

Schöning, Verena; Liakoni, Evangelia; Baumgartner, Christine; Exadaktylos, Aristomenis K.; Hautz, Wolf E.; Atkinson, Andrew; Hammann, Felix (2021). Development and validation of a prognostic COVID-19 severity assessment (COSA) score and machine learning models for patient triage at a tertiary hospital. Journal of translational medicine, 19(1), p. 56. BioMed Central 10.1186/s12967-021-02720-w


Sommerstein, Rami; Marschall, Jonas; Atkinson, Andrew; Surbek, Daniel; Dominguez-Bello, Maria Gloria; Troillet, Nicolas; Widmer, Andreas F (2020). Antimicrobial prophylaxis administration after umbilical cord clamping in cesarean section and the risk of surgical site infection: a cohort study with 55,901 patients. Antimicrobial resistance and infection control, 9(1), p. 201. BioMed Central 10.1186/s13756-020-00860-0

Schweiger, Alexander; Kuster, Stefan P; Maag, Judith; Züllig, Stephanie; Bertschy, Sonja; Bortolin, Emmanuelle; John, Gregor; Sax, Hugo; Limacher, Andreas; Atkinson, Andrew; Schwappach, David; Marschall, Jonas (2020). Impact of an evidence-based intervention on urinary catheter utilization, associated process indicators, and infectious and non-infectious outcomes. Journal of hospital infection, 106(2), pp. 364-371. Elsevier 10.1016/j.jhin.2020.07.002

Piezzi, Vanja; Gasser, Michael; Atkinson, Andrew; Kronenberg, Andreas; Vuichard-Gysin, Danielle; Harbarth, Stephan; Marschall, Jonas; Buetti, Niccolò (2020). Increasing proportion of vancomycin-resistance among enterococcal bacteraemias in Switzerland: a 6-year nation-wide surveillance, 2013 to 2018. Eurosurveillance, 25(35) European Centre for Disease Prevention and Control 10.2807/1560-7917.ES.2020.25.35.1900575

Möller, Burkhard; Aletaha, Daniel; Andor, Michael; Atkinson, Andrew; Aubry-Rozier, Bérengère; Brulhart, Laure; Dan, Diana; Finckh, Axel; Grobéty, Véronique; Mandl, Peter; Micheroli, Raphael; Nissen, Michael John; Nydegger, Alexander M; Scherer, Almut; Tamborrini, Giorgio; Ziswiler, Hans-Rudolf; Zufferey, Pascal (2020). Synovitis in rheumatoid arthritis detected by grey scale ultrasound predicts the development of erosions over the next three years. Rheumatology, 59(7), pp. 1556-1565. Oxford University Press 10.1093/rheumatology/kez460

Hebeisen, Ursula; Babouee Flury, Baharak; Atkinson, Andrew; Marschall, Jonas; Buetti, Niccolò (2020). Catheter-related bloodstream infections due to coagulase-negative staphylococci managed with catheter removal: Recurrences are rare. American journal of infection control, 48(7), pp. 837-839. Elsevier 10.1016/j.ajic.2019.10.013

Atkinson, Andrew; Zwahlen, Marcel; Barger, D; d'Arminio Monforte, A; De Wit, S; Ghosn, J; Girardi, E; Svedhem-Johansson, V; Morlat, P; Mussini, C; Noguera-Julian, A; Stephan, C; Touloumi, G; Kirk, O; Mocroft, A; Reiss, P; Miro, J M; Carpenter, J R; Furrer, Hansjakob (2020). Withholding primary PcP prophylaxis in virologically suppressed HIV patients: An emulation of a pragmatic trial in COHERE. (In Press). Clinical infectious diseases The University of Chicago Press 10.1093/cid/ciaa615

Boschung-Pasquier, Léna; Atkinson, Andrew; Kastner, Leonie Kassandra; Banholzer, Sarah; Haschke, Manuel; Buetti, Niccolò; Furrer, Dominique I; Hauser, Christoph; Jent, Philipp; Que, Yok-Ai; Furrer, Hansjakob; Babouee Flury, Baharak (2020). Cefepime neurotoxicity: thresholds and risk factors. A Retrospective Cohort study. Clinical microbiology and infection, 26(3), pp. 333-339. Elsevier 10.1016/j.cmi.2019.06.028


Waldvogel, Salome; Atkinson, Andrew; Wilbeaux, Mélanie; Nelle, Mathias; Berger, Markus Rudolf; Gerull, Roland (2019). High Dose Indomethacin for Patent Ductus Arteriosus Closure Increases Neonatal Morbidity. (In Press). American journal of perinatology Thieme Medical Publishers 10.1055/s-0039-3400996

Ziesenitz, Victoria C; Rodieux, Frédérique; Atkinson, Andrew; Borter, Carole; Bielicki, Julia A; Haschke, Manuel; Duthaler, Urs; Bachmann, Fabio; Erb, Thomas O; Gürtler, Nicolas; Holland-Cunz, Stefan; van den Anker, Johannes N; Gotta, Verena; Pfister, Marc (2019). Dose evaluation of intravenous metamizole (dipyrone) in infants and children: a prospective population pharmacokinetic study. European journal of clinical pharmacology, 75(11), pp. 1491-1502. Springer 10.1007/s00228-019-02720-2

Atkinson, Andrew; Kenward, Michael G; Clayton, Tim; Carpenter, James R (2019). Reference-based sensitivity analysis for time-to-event data. Pharmaceutical Statistics, 18(6), pp. 645-658. Wiley 10.1002/pst.1954

Sommerstein, Rami; Atkinson, Andrew; Kuster, Stefan P; Thurneysen, Maurus; Genoni, Michele; Troillet, Nicolas; Marschall, Jonas; Widmer, Andreas F (2019). Antimicrobial prophylaxis and the prevention of surgical site infection in cardiac surgery: an analysis of 21 007 patients in Switzerland†. European journal of cardio-thoracic surgery, 56(4), pp. 800-806. Oxford University Press 10.1093/ejcts/ezz039

van Donge, Tamara; Welzel, Tatjana; Atkinson, Andrew; van den Anker, John; Pfister, Marc (2019). Age-Dependent Changes of Kidney Injury Biomarkers in Pediatrics. Journal of clinical pharmacology, 59(Suppl. 1), S21-S32. American College of Clinical Pharmacology 10.1002/jcph.1487

Wandeler, Gilles; Mauron, Etienne; Atkinson, Andrew; Dufour, Jean-François; Kraus, David; Reiss, Peter; Peters, Lars; Dabis, François; Fehr, Jan; Bernasconi, Enos; van der Valk, Marc; Smit, Colette; Gjærde, Lars K; Rockstroh, Jürgen; Neau, Didier; Bonnet, Fabrice; Rauch, Andri (2019). Incidence of Hepatocellular Carcinoma in HIV/HBV-coinfected Patients on Tenofovir therapy: Relevance for Screening Strategies. Journal of hepatology, 71(2), pp. 274-280. Elsevier 10.1016/j.jhep.2019.03.032

Donà, Valentina; Scheidegger, Maximilian; do Couto Pires, João Pedro; Furrer, Hansjakob; Atkinson, Andrew; Babouee Flury, Baharak (2019). Gradual in vitro Evolution of Cefepime Resistance in an ST131 Escherichia coli Strain Expressing a Plasmid-Encoded CMY-2 β-Lactamase. Frontiers in Microbiology, 10, p. 1311. Frontiers 10.3389/fmicb.2019.01311

Hebeisen, Ursula Patricia; Atkinson, Andrew; Marschall, Jonas; Buetti, Niccolò Ivo Marco-Aurelio (2019). Catheter-related bloodstream infections with coagulase-negative staphylococci: are antibiotics necessary if the catheter is removed? Antimicrobial Resistance and Infection Control, 8(21), p. 21. BioMed Central 10.1186/s13756-019-0474-x


Büchi, Annina; Hoffmann, Mario; Zbinden, Stephan; Atkinson, Andrew; Sendi, Parham (2018). The Duke minor criterion "predisposing heart condition" in native valve infective endocarditis - a systematic review. Swiss medical weekly, 148(w14675), w14675. EMH Schweizerischer Ärzteverlag 10.4414/smw.2018.14675

Buetti, Niccolò Ivo Marco-Aurelio; Lo Priore, Elia Francesco; Sommerstein, Rami; Atkinson, Andrew; Kronenberg, Andreas Oskar; Marschall, Jonas (2018). Epidemiology of subsequent bloodstream infections in the ICU. Critical care, 22(1), p. 259. BioMed Central 10.1186/s13054-018-2148-0

Surial, Bernard; Atkinson, Andrew; Nüesch, Susanne; Schefold, Joerg C.; Marschall, Jonas (2018). Promoting an action plan for devices in the emergency department-does it impact catheter duration? Infection control and hospital epidemiology, 39(8), pp. 1011-1012. Cambridge University Press 10.1017/ice.2018.132

Buetti, Niccolò Ivo Marco-Aurelio; Lo Priore, Elia Francesco; Atkinson, Andrew; Kronenberg, Andreas Oskar; Marschall, Jonas (2018). Low incidence of subsequent bacteremia or fungemia after removal of a colonized intravascular catheter tip. Clinical microbiology and infection, 24(5), 548.e1-548.e3. Elsevier 10.1016/j.cmi.2017.09.009

do Couto Pires, João Pedro; Kuenzli, Esther; Hauser, Christoph; Tinguely, Regula; Kasraian Fard, Sara; Atkinson, Andrew; Rauch, Andri; Furrer, Hansjakob; Perreten, Vincent; Marschall, Jonas; Hatz, Christoph; Endimiani, Andrea (2018). Intestinal Colonization with Extended-Spectrum Cephalosporin-Resistant Enterobacteriaceae in Different Populations in Switzerland: Prevalence, Risk Factors and Molecular Features. Journal of global antimicrobial resistance, 12, pp. 17-19. Elsevier 10.1016/j.jgar.2017.11.007

Sommerstein, Rami; Atkinson, Andrew; Lo Priore, Elia; Kronenberg, Andreas Oskar; Marschall, Jonas (2018). Characterizing Non-linear Effects of Hospitalization Duration on Antimicrobial Resistance in Respiratory Isolates: A Retrospective Analysis of a Prospective Nationwide Surveillance System. Clinical microbiology and infection, 24(1), pp. 45-52. Elsevier 10.1016/j.cmi.2017.05.018

Buetti, Niccolò; Atkinson, Andrew; Widmer, Andreas F; Kronenberg, Andreas; Marschall, Jonas (2018). Catheter-related infections: does the spectrum of microbial causes change over time? A nationwide surveillance study. BMJ open, 8(e023824), pp. 1-5. BMJ Publishing Group 10.1136/bmjopen-2018-023824


Do Couto Pires, Joao Pedro; Bernasconi, Odette Joëlle; Hauser, Christoph; Tinguely, Regula; Atkinson, Andrew; Perreten, Vincent; Donà, Valentina; Rauch, Andri; Furrer, Hansjakob; Endimiani, Andrea (2017). Erratum to 'Intestinal colonisation with extended-spectrum cephalosporin- and colistin-resistant Enterobacteriaceae in HIV-positive individuals in Switzerland: molecular features and risk factors' [International Journal of Antimicrobial Agents 49/4 (2017) 519-521]. International journal of antimicrobial agents, 50(2), p. 276. Elsevier 10.1016/j.ijantimicag.2017.05.002

Fenner, Lukas; Atkinson, Andrew; Boulle, Andrew; Fox, Matthew P; Prozesky, Hans; Zürcher, Kathrin; Ballif, Marie; Furrer, Hansjakob; Zwahlen, Marcel; Davies, Mary-Ann; Egger, Matthias; eDEA-SA, Int. Epidemiology Database to Evaluate AIDS in Southern Africa (2017). HIV viral load as an independent risk factor for tuberculosis in South Africa: collaborative analysis of cohort studies. Journal of the International AIDS Society, 20(1), p. 21327. BioMed Central 10.7448/IAS.20.1.21327

Béguelin, Charles Antoine; Friolet, Nicole; Moradpour, Darius; Sahli, Roland; Suter, Franziska Marta; Lüthi, Alexander; Cavassini, Matthias; Günthard, Huldrych F; Battegay, Manuel; Bernasconi, Enos; Schmid, Patrick; Calmy, Alexandra; Atkinson, Andrew; Rauch, Andri; Wandeler, Gilles (2017). Impact of tenofovir on hepatitis delta virus replication in the Swiss HIV Cohort Study. Clinical infectious diseases, 64(9), pp. 1275-1278. Oxford University Press 10.1093/cid/cix125

Buetti, Niccolò Ivo Marco-Aurelio; Atkinson, Andrew; Kronenberg, Andreas Oskar; Marschall, Jonas (2017). Different Epidemiology of Hospital-Acquired Bloodstream Infections Between Small Community Hospitals and Large Community Hospitals. Clinical infectious diseases, 64(7), pp. 984-985. Oxford University Press 10.1093/cid/cix040

Do Couto Pires, Joao Pedro; Bernasconi, Odette Joëlle; Hauser, Christoph; Tinguely, Regula; Atkinson, Andrew; Perreten, Vincent; Donà, Valentina; Rauch, Andri; Furrer, Hansjakob; Endimiani, Andrea (2017). Intestinal colonisation with extended-spectrum cephalosporin- and colistin-resistant Enterobacteriaceae in HIV-positive individuals in Switzerland: molecular features and risk factors. International journal of antimicrobial agents, 49(4), pp. 519-521. Elsevier 10.1016/j.ijantimicag.2017.02.004

Buetti, Niccolò Ivo Marco-Aurelio; Atkinson, Andrew; Marschall, Jonas; Kronenberg, Andreas Oskar (2017). Incidence of bloodstream infections: a nationwide surveillance of acute care hospitals in Switzerland 2008-2014. BMJ open, 7(3), e013665. BMJ Publishing Group 10.1136/bmjopen-2016-013665

Buetti, Niccolò Ivo Marco-Aurelio; Atkinson, Andrew; Kottanattu, L; Bielicki, J; Marschall, Jonas; Kronenberg, Andreas (2017). Patterns and trends of pediatric bloodstream infections: a 7-year surveillance study. European journal of clinical microbiology & infectious diseases, 36(3), pp. 537-544. Springer 10.1007/s10096-016-2830-6

Sommerstein, Rami; Geser, Sonja; Atkinson, Andrew; Tschan, Franziska; Morgan, Daniel J; Marschall, Jonas (2017). Knowledge sharing in infection prevention in routine and outbreak situations: a survey of the Society for Healthcare Epidemiology of America Research Network. Antimicrobial Resistance and Infection Control, 6(79), p. 79. BioMed Central 10.1186/s13756-017-0237-5


Buetti, Niccolò Ivo Marco-Aurelio; Marschall, Jonas; Atkinson, Andrew; Kronenberg, Andreas (2016). National Bloodstream Infection Surveillance in Switzerland 2008-2014: Different Patterns and Trends for University and Community Hospitals. Infection control and hospital epidemiology, 37(9), pp. 1060-1067. Cambridge University Press 10.1017/ice.2016.137

Haubitz, Sebastian; Atkinson, Andrew; Kaspar, Tanja; Nydegger-Brechbühl, Doris; Eichenberger, Anne; Sommerstein, Rami; Marschall, Jonas (2016). Handrub Consumption Mirrors Hand Hygiene Compliance. Infection control and hospital epidemiology, 37(6), pp. 707-710. SLACK 10.1017/ice.2016.47

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