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Locher, Noah; Wagner, Benedikt; Balsiger, Fabian; Scheidegger, Olivier (2022). Quantitative water T2 relaxometry in the early detection of neuromuscular diseases: a retrospective biopsy-controlled analysis. European radiology, 32(11), pp. 7910-7917. Springer 10.1007/s00330-022-08862-9
Balsiger, Fabian; Wagner, Benedikt; Jende, Johann M E; Marty, Benjamin; Bendszus, Martin; Scheidegger, Olivier; Kurz, Felix T (2022). Methodologies and MR Parameters in Quantitative Magnetic Resonance Neurography: A Scoping Review Protocol. Methods and protocols, 5(3) MDPI AG 10.3390/mps5030039
Valenzuela, Waldo; Balsiger, Fabian; Wiest, Roland; Scheidegger, Olivier (2022). Medical-Blocks: A Platform for Exploration, Management, Analysis, and Sharing of Data in Biomedical Research. JMIR formative research, 6(4), e32287. JMIR Publications 10.2196/32287
Jungo, Alain; Scheidegger, Olivier; Reyes, Mauricio; Balsiger, Fabian (2021). pymia: A Python package for data handling and evaluation in deep learning-based medical image analysis. Computer methods and programs in biomedicine, 198, p. 105796. Elsevier 10.1016/j.cmpb.2020.105796
Balsiger, Fabian; Jungo, Alain; Scheidegger, Olivier; Marty, Benjamin; Reyes, Mauricio (2020). Learning Bloch Simulations for MR Fingerprinting by Invertible Neural Networks. In: Deeba, Farah; Johnson, Patricia; Würfl, Tobias; Ye, Jong Chul (eds.) Machine Learning for Medical Image Reconstruction. Lecture Notes in Computer Science: Vol. 12450 (pp. 60-69). Cham: Springer 10.1007/978-3-030-61598-7_6
Balsiger, Fabian; Jungo, Alain; Scheidegger, Olivier; Carlier, Pierre G; Reyes, Mauricio; Marty, Benjamin (2020). Spatially regularized parametric map reconstruction for fast magnetic resonance fingerprinting. Medical image analysis, 64(101741), p. 101741. Elsevier 10.1016/j.media.2020.101741
Jungo, Alain; Balsiger, Fabian; Reyes, Mauricio (2020). Analyzing the Quality and Challenges of Uncertainty Estimations for Brain Tumor Segmentation. Frontiers in neuroscience, 14(282), p. 282. Frontiers Research Foundation 10.3389/fnins.2020.00282
Balsiger, Fabian; Scheidegger, Oliver; Carlier, Pierre; Marty, Benjamin; Reyes, Mauricio (2019). On the Spatial and Temporal Influence for the Reconstruction of Magnetic Resonance Fingerprinting. Proceedings of machine learning research, pp. 27-38. JMLR
Balsiger, Fabian; Soom, Yannick; Scheidegger, Olivier; Reyes, Mauricio (2019). Learning Shape Representation on Sparse Point Clouds for Volumetric Image Segmentation. In: Medical Image Computing and Computer Assisted Intervention – MICCAI 2019. Lecture Notes in Computer Science: Vol. 11765 (pp. 273-281). Cham: Springer International Publishing 10.1007/978-3-030-32245-8_31
Balsiger, Fabian; Steindel, Carolin; Arn, Mirjam; Wagner, Benedikt; Grunder, Lorenz Nicolas; El-Koussy, Marwan; Valenzuela, Waldo Enrique; Reyes, Mauricio; Scheidegger, Olivier (2018). Segmentation of Peripheral Nerves From Magnetic Resonance Neurography: A Fully-Automatic, Deep Learning-Based Approach. Frontiers in neurology, 9(777), p. 777. Frontiers Media S.A. 10.3389/fneur.2018.00777
Balsiger, Fabian; Shridhar Konar, Amaresha; Chikop, Shivaprasad; Chandran, Vimal; Scheidegger, Olivier; Geethanath, Sairam; Reyes, Mauricio (2018). Magnetic Resonance Fingerprinting Reconstruction via Spatiotemporal Convolutional Neural Networks. In: Machine Learning for Medical Image Reconstruction. Lecture Notes in Computer Science: Vol. 11074 (pp. 39-46). Cham: Springer International Publishing 10.1007/978-3-030-00129-2_5
