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Stalder, Lukas; Eberle, Andrea; Bühler, Marc; Nicholson, Pamela; Mühlemann, Oliver (2009). Nonsense-mediated transcriptional gene silencing: a puzzle far from being solved. In: Workshop "RNA Quality 2009", Gif sur Yvette, France, 13-15 May 2009. Strasbourg: European Science Foundation
Eberle, Andrea B; Mühlemann, Oliver (2022). Tethered Function Assays to Elucidate the Role of RNA-Binding Proteins. Methods in molecular biology, 2537, pp. 285-306. Springer 10.1007/978-1-0716-2521-7_17
Humphrey, Jack; Birsa, Nicol; Milioto, Carmelo; McLaughlin, Martha; Ule, Agnieszka M.; Robaldo, David; Eberle, Andrea B.; Kräuchi, Rahel; Bentham, Matthew; Brown, Anna-Leigh; Jarvis, Seth; Bodo, Cristian; Garone, Maria G.; Devoy, Anny; Soraru, Gianni; Rosa, Alessandro; Bozzoni, Irene; Fisher, Elizabeth M. C.; Mühlemann, Oliver; Schiavo, Giampietro; ... (2020). FUS ALS-causative mutations impair FUS autoregulation and splicing factor networks through intron retention. Nucleic acids research, 48(12), pp. 6889-6905. Oxford University Press 10.1093/nar/gkaa410
Eberle, Andrea Brigitte (2018). Spike-In Normalization of ChIP Data Using DNA–DIG–Antibody Complex. In: Visa, Neus; Jordán-Pla, Antonio (eds.) Chromatin Immunoprecipitation: Methods and Protocols. Methods in Molecular Biology: Vol. 1689 (pp. 227-238). New York, NY: Springer New York 10.1007/978-1-4939-7380-4_18
Joncourt, Raphael; Eberle, Andrea; Rufener, Simone; Mühlemann, Oliver; Song, Haiwei (2014). Eukaryotic Initiation Factor 4G Suppresses Nonsense-Mediated mRNA Decay by Two Genetically Separable Mechanisms. PLoS ONE, 9(8), e104391. Public Library of Science 10.1371/journal.pone.0104391
Eberle, Andrea B.; Stalder, Lukas; Mathys, Hansruedi; Zamudio Orozco, Rodolfo; Mühlemann, Oliver (2008). Posttranscriptional Gene Regulation by Spatial Rearrangement of the 3' Untranslated Region. PLoS biology, 6(4), e92. Lawrence, Kans.: Public Library of Science 10.1371/journal.pbio.0060092
