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Fernandez, Javier Eduardo; Egli, Adrian; Overesch, Gudrun; Perreten, Vincent (2024). Time-calibrated phylogenetic and chromosomal mobilome analyses of Staphylococcus aureus CC398 reveal geographical and host-related evolution. Nature Communications, 15(1), p. 5526. Springer Nature 10.1038/s41467-024-49644-9
Bernier Gosselin, Véronique; Fernandez, Javier E; Ollagnier, Catherine; Morel, Isabelle; Siegenthaler, Raphael; Collaud, Alexandra; Meylan, Mireille; Perreten, Vincent (2024). Whole-genome sequencing-based antimicrobial resistance and shedding dynamics of Escherichia coli isolated from calves before and after antimicrobial group treatments. Microbiology spectrum, 12(4), e0321423. American Society for Microbiology 10.1128/spectrum.03214-23
Aebi, Cindy Bianca; Fernandez, Javier Eduardo; Kittl, Sonja Cornelia; Tresch, Milena Laura; Perreten, Vincent; Overesch, Gudrun (2023). Characterization of third-generation cephalosporin-resistant Escherichia coli from slaughter calves and fattening pigs: A pilot study for monitoring antimicrobial resistance by whole genome sequencing in Switzerland. Schweizer Archiv für Tierheilkunde, 165(6), pp. 372-384. Gesellschaft Schweizer Tierärztinnen und Tierärzte 10.17236/sat00396
Fernandez, Javier E; Seth-Smith, Helena M B; Nordmann, Patrice; Egli, Adrian; Endimiani, Andrea; Perreten, Vincent (2022). Intra- and Interspecies Spread of a Novel Conjugative Multidrug Resistance IncC Plasmid Coharboring blaOXA-181 and armA in a Cystic Fibrosis Patient. Microbiology spectrum, 10(5), e0312122. American Society for Microbiology 10.1128/spectrum.03121-22
Becker, Jens; Fernandez, Javier E; Rossano, Alexandra; Meylan, Mireille; Perreten, Vincent (2022). Clonal dissemination of MDR Pasteurella multocida ST79 in a small Swiss veal calf farm with high use of antibiotics. The journal of antimicrobial chemotherapy, 77(10), pp. 2886-2888. Oxford University Press 10.1093/jac/dkac270
Hurni, J I; Kaiser-Thom, S; Gerber, V; Keller, J E; Collaud, A; Fernandez, J; Schwendener, S; Perreten, V (2022). Prevalence and whole genome-based phylogenetic, virulence and antibiotic resistance characteristics of nasal Staphylococcus aureus in healthy Swiss horses. Schweizer Archiv für Tierheilkunde, 164(7), pp. 499-512. Gesellschaft Schweizer Tierärztinnen und Tierärzte 10.17236/sat00360
Fernandez, Javier Eduardo; Perreten, Vincent; Schwendener, Sybille (2021). The novel macrolide resistance genes mef(F) and msr(G) are located on a plasmid in Macrococcus canis and a transposon in Macrococcus caseolyticus. The journal of antimicrobial chemotherapy, 76(1), pp. 48-54. Oxford University Press 10.1093/jac/dkaa405
Becker, Jens Michael; Meylan, Mireille; Fernandez, Javier Eduardo; Rossano, Alexandra (2023). Clonal dissemination of MDR Pasteurella multocida ST79 in a Swiss veal calves (Unpublished). In: EAAP + WAAP + Interbull Congress 2023. Lyon, France. August 26th / September 1st, 2023.