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Manna, Sam; Werren, Joel P; Ortika, Belinda D; Bellich, Barbara; Pell, Casey L; Nikolaou, Elissavet; Gjuroski, Ilche; Lo, Stephanie; Hinds, Jason; Tundev, Odgerel; Dunne, Eileen M; Gessner, Bradford D; Bentley, Stephen D; Russell, Fiona M; Mulholland, E Kim; Mungun, Tuya; von Mollendorf, Claire; Licciardi, Paul V; Cescutti, Paola; Ravenscroft, Neil; ... (2024). Streptococcus pneumoniae serotype 33G: genetic, serological, and structural analysis of a new capsule type. Microbiology spectrum, 12(1), e0357923. American Society for Microbiology 10.1128/spectrum.03579-23
Mostacci, Nadja; Wüthrich, Tsering Monika; Siegwald, Léa; Kieser, Silas; Steinberg, Ruth; Sakwinska, Olga; Latzin, Philipp; Korten, Insa; Hilty, Markus (2023). Informed interpretation of metagenomic data by StrainPhlAn enables strain retention analyses of the upper airway microbiome. mSystems, 8(6), e0072423. American Society for Microbiology 10.1128/msystems.00724-23
Bugnon, Quentin; Melendez, Camilo; Desiatkina, Oksana; Fayolle de Chaptes, Louis; Holzer, Isabelle; Păunescu, Emilia; Hilty, Markus; Furrer, Julien (2023). In vitro antibacterial activity of dinuclear thiolato-bridged ruthenium(II)-arene compounds. Microbiology spectrum, 11(6), e0095423. American Society for Microbiology 10.1128/spectrum.00954-23
Paulo, A Cristina; Lança, João; Almeida, Sónia T; Hilty, Markus; Sá-Leão, Raquel (2023). The upper respiratory tract microbiota of healthy adults is affected by Streptococcus pneumoniae carriage, smoking habits, and contact with children. Microbiome, 11(1), p. 199. BioMed Central 10.1186/s40168-023-01640-9
Shaw, David; Abad, Raquel; Amin-Chowdhury, Zahin; Bautista, Adriana; Bennett, Desiree; Broughton, Karen; Cao, Bin; Casanova, Carlo; Choi, Eun Hwa; Chu, Yiu-Wai; Claus, Heike; Coelho, Juliana; Corcoran, Mary; Cottrell, Simon; Cunney, Robert; Cuypers, Lize; Dalby, Tine; Davies, Heather; de Gouveia, Linda; Deghmane, Ala-Eddine; ... (2023). Trends in invasive bacterial diseases during the first 2 years of the COVID-19 pandemic: analyses of prospective surveillance data from 30 countries and territories in the IRIS Consortium. The Lancet. Digital health, 5(9), e582-e593. Elsevier 10.1016/S2589-7500(23)00108-5
Rüttimann, Céline; Nissen-Kratzert, Annika; Mostacci, Nadja; Künstle, Noëmi; Marten, Andrea; Gisler, Amanda; Bacher, Katharina; Yammine, Sophie; Steinberg, Ruth; Schulzke, Sven; Röösli, Martin; Latzin, Philipp; Hilty, Markus; Frey, Urs; Gorlanova, Olga (2023). Antibiotics in pregnancy influence nasal microbiome and respiratory morbidity in infancy. ERJ Open Research, 9(4) European Respiratory Society 10.1183/23120541.00225-2023
Sudatip, Duangdao; Mostacci, Nadezda; Tiengrim, Surapee; Thamlikitkul, Visanu; Chasiri, Kittipong; Kritiyakan, Anamika; Phanprasit, Wantanee; Thinphovong, Chuanphot; Abdallah, Rim; Baron, Sophie Alexandra; Rolain, Jean-Marc; Morand, Serge; Oppliger, Anne; Hilty, Markus (2023). The risk of pig and chicken farming for carriage and transmission of Escherichia coli containing extended-spectrum beta-lactamase (ESBL) and mobile colistin resistance (mcr) genes in Thailand. Microbial genomics, 9(3) Microbiology Society 10.1099/mgen.0.000951
Werren, Joel P; Mostacci, Nadja; Gjuroski, Ilche; Holivololona, Lalaina; Troxler, Lukas J; Hathaway, Lucy J; Furrer, Julien; Hilty, Markus (2023). Carbon source-dependent capsule thickness regulation in Streptococcus pneumoniae. Frontiers in cellular and infection microbiology, 13(1279119), p. 1279119. Frontiers 10.3389/fcimb.2023.1279119
Sudatip, Duangdao; Mostacci, Nadezda; Thamlikitkul, Visanu; Oppliger, Anne; Hilty, Markus (2022). Influence of occupational exposure to pigs or chickens on human gut microbiota composition in Thailand. One health, 15(100463), p. 100463. Elsevier 10.1016/j.onehlt.2022.100463
Lux, Janine; Holivololona, Lalaina; San Millan Gutierrez, Raquel; Hilty, Markus; Ramette, Alban; Heller, Manfred; Hathaway, Lucy J (2022). AmiA and AliA peptide ligands are secreted by Klebsiella pneumoniae and inhibit growth of Streptococcus pneumoniae. Scientific reports, 12(1), p. 22268. Springer Nature 10.1038/s41598-022-26838-z
Kraemer, Julia G; Hilty, Markus; Oppliger, Anne (2022). Occupational Exposure to β-d-Glucans, Mould Allergens, Endotoxins and Cultivable Fungi in Pig Farms. Annals of work exposures and health, 66(8), pp. 967-973. Oxford University Press 10.1093/annweh/wxac055
Oyewole, Oluwaseun Rume-Abiola; Latzin, Philipp; Brugger, Silvio D; Hilty, Markus (2022). Strain-level resolution and pneumococcal carriage dynamics by single-molecule real-time (SMRT) sequencing of the plyNCR marker: a longitudinal study in Swiss infants. Microbiome, 10(1), p. 152. BioMed Central 10.1186/s40168-022-01344-6
Radulovic, Emilia; Mehinagic, Kemal; Wüthrich, Tsering; Hilty, Markus; Posthaus, Horst; Summerfield, Artur; Ruggli, Nicolas; Benarafa, Charaf (2022). The baseline immunological and hygienic status of pigs impact disease severity of African swine fever. PLoS pathogens, 18(8), e1010522. Public Library of Science 10.1371/journal.ppat.1010522
Kaiser-Thom, Sarah; Hilty, Markus; Ramseyer, Alessandra; Epper, Pascale; Gerber, Vinzenz (2022). The relationship between equine pastern dermatitis, meteorological factors, and the skin microbiota. Veterinary dermatology, 33(2), 165-e48. Wiley 10.1111/vde.13045
Kaiser-Thom, Sarah; Hilty, Markus; Axiak, Shannon; Gerber, Vinzenz (2021). The skin microbiota in equine pastern dermatitis: a case-control study of horses in Switzerland. Veterinary dermatology, 32(6), 646-e172. Wiley 10.1111/vde.12955
Casanova, Carlo; Küffer, Marianne; Leib, Stephen L.; Hilty, Markus (2021). Re-emergence of invasive pneumococcal disease (IPD) and increase of serotype 23B after easing of COVID-19 measures, Switzerland, 2021. Emerging microbes & infections, 10(1), pp. 2202-2204. Taylor & Francis 10.1080/22221751.2021.2000892
Gisler, Amanda; Korten, Insa; de Hoogh, Kees; Vienneau, Danielle; Frey, Urs; Decrue, Fabienne; Gorlanova, Olga; Soti, Andras; Hilty, Markus; Latzin, Philipp; Usemann, Jakob (2021). Associations of air pollution and greenness with the nasal microbiota of healthy infants: A longitudinal study. Environmental research, 202, p. 111633. Elsevier 10.1016/j.envres.2021.111633
Moor, Julia; Aebi, Susanne; Rickli, Susanne; Mostacci, Nadezda; Overesch, Gudrun; Oppliger, Anne; Hilty, Markus (2021). Dynamics of extended-spectrum cephalosporin-resistant Escherichia coli in pig farms: A longitudinal study. International journal of antimicrobial agents, 58(3), p. 106382. Elsevier 10.1016/j.ijantimicag.2021.106382
Ticlla, Monica R; Hella, Jerry; Hiza, Hellen; Sasamalo, Mohamed; Mhimbira, Francis; Rutaihwa, Liliana K; Droz, Sara; Schaller, Sarah; Reither, Klaus; Hilty, Markus; Comas, Inaki; Beisel, Christian; Schmid, Christoph D; Fenner, Lukas; Gagneux, Sebastien (2021). The Sputum Microbiome in Pulmonary Tuberculosis and Its Association With Disease Manifestations: A Cross-Sectional Study. Frontiers in Microbiology, 12, p. 633396. Frontiers 10.3389/fmicb.2021.633396
Kraemer, Julia G.; Aebi, Suzanne; Hilty, Markus; Oppliger, Anne (2021). Nasal microbiota composition dynamics after occupational change in animal farmers suggest major shifts. Science of the total environment, 782(146842), p. 146842. Elsevier 10.1016/j.scitotenv.2021.146842
Brueggemann, Angela B; Jansen van Rensburg, Melissa J; Shaw, David; McCarthy, Noel D; Jolley, Keith A; Maiden, Martin C J; van der Linden, Mark P G; Amin-Chowdhury, Zahin; Bennett, Désirée E; Borrow, Ray; Brandileone, Maria-Cristina C; Broughton, Karen; Campbell, Ruth; Cao, Bin; Casanova, Carlo; Choi, Eun Hwa; Chu, Yiu Wai; Clark, Stephen A; Claus, Heike; Coelho, Juliana; ... (2021). Changes in the incidence of invasive disease due to Streptococcus pneumoniae, Haemophilus influenzae, and Neisseria meningitidis during the COVID-19 pandemic in 26 countries and territories in the Invasive Respiratory Infection Surveillance Initiative: a prospective analysis of surveillance data. The Lancet. Digital health, 3(6), e360-e370. Elsevier 10.1016/S2589-7500(21)00077-7
Oyewole, Oluwaseun Rume-Abiola; Lang, Phung; Albrich, Werner C.; Wissel, Kerstin; Leib, Stephen L.; Casanova, Carlo; Hilty, Markus (2021). The Impact of Pneumococcal Conjugate Vaccine (PCV) Coverage Heterogeneities on the Changing Epidemiology of Invasive Pneumococcal Disease in Switzerland, 2005–2019. Microorganisms, 9(5) MDPI 10.3390/microorganisms9051078
Almaw, Gizat; Abie Mekonnen, Getnet; Mihret, Adane; Aseffa, Abraham; Taye, Hawult; Conlan, Andrew J. K.; Gumi, Balako; Zewude, Aboma; Aliy, Abde; Tamiru, Mekdes; Olani, Abebe; Lakew, Matios; Sombo, Melaku; Gebre, Solomon; Diguimbaye, Colette; Hilty, Markus; Fané, Adama; Müller, Borna; Hewinson, R. Glyn; Ellis, Richard J.; ... (2021). Population structure and transmission of Mycobacterium bovis in Ethiopia. Microbial genomics, 7(5) Microbiology Society 10.1099/mgen.0.000539
Knoll, Maria Deloria; Bennett, Julia C.; Garcia Quesada, Maria; Kagucia, Eunice W.; Peterson, Meagan E.; Feikin, Daniel R.; Cohen, Adam L.; Hetrich, Marissa K.; Yang, Yangyupei; Sinkevitch, Jenna N.; Ampofo, Krow; Aukes, Laurie; Bacci, Sabrina; Bigogo, Godfrey; Brandileone, Maria-Cristina C.; Bruce, Michael G.; Camilli, Romina; Castilla, Jesús; Chan, Guanhao; Chanto Chacón, Grettel; ... (2021). Global Landscape Review of Serotype-Specific Invasive Pneumococcal Disease Surveillance among Countries Using PCV10/13: The Pneumococcal Serotype Replacement and Distribution Estimation (PSERENADE) Project. Microorganisms, 9(4) MDPI 10.3390/microorganisms9040742
Garcia Quesada, Maria; Yang, Yangyupei; Bennett, Julia C.; Hayford, Kyla; Zeger, Scott L.; Feikin, Daniel R.; Peterson, Meagan E.; Cohen, Adam L.; Almeida, Samanta C. G.; Ampofo, Krow; Ang, Michelle; Bar-Zeev, Naor; Bruce, Michael G.; Camilli, Romina; Chanto Chacón, Grettel; Ciruela, Pilar; Cohen, Cheryl; Corcoran, Mary; Dagan, Ron; De Wals, Philippe; ... (2021). Serotype Distribution of Remaining Pneumococcal Meningitis in the Mature PCV10/13 Period: Findings from the PSERENADE Project. Microorganisms, 9(4) MDPI 10.3390/microorganisms9040738
Sangiorgio, Daphne B.; Hilty, Markus; Kaiser-Thom, Sarah; Epper, Pascale G.; Ramseyer, Alessandra A.; Overesch, Gudrun; Gerber, Vinzenz M. (2021). The influence of clinical severity and topical antimicrobial treatment on bacteriological culture and the microbiota of equine pastern dermatitis. Veterinary dermatology, 32(2), 173-e41. Wiley 10.1111/vde.12912
Bennett, Julia C.; Hetrich, Marissa K.; Garcia Quesada, Maria; Sinkevitch, Jenna N.; Knoll, Maria Deloria; Feikin, Daniel R.; Zeger, Scott L.; Kagucia, Eunice W.; Cohen, Adam L.; Ampofo, Krow; Brandileone, Maria-Cristina C.; Bruden, Dana; Camilli, Romina; Castilla, Jesús; Chan, Guanhao; Cook, Heather; Cornick, Jennifer E.; Dagan, Ron; Dalby, Tine; Danis, Kostas; ... (2021). Changes in Invasive Pneumococcal Disease Caused by Streptococcus pneumoniae Serotype 1 Following Introduction of PCV10 and PCV13: Findings from the PSERENADE Project. Microorganisms, 9(4) MDPI 10.3390/microorganisms9040696
Sudatip, Duangdao; Chasiri, Kittipong; Kritiyakan, Anamika; Phanprasit, Wantanee; Thinphovong, Chuanphot; Tiengrim, Surapee; Thamlikitkul, Visanu; Abdallah, Rim; Baron, SA; Rolain, JM; Morand, S; Hilty, Markus; Oppliger, Anne (2021). A One Health approach to assessing occupational exposure to antimicrobial resistance in Thailand: The FarmResist project. PLoS ONE, 16(1), e0245250. Public Library of Science 10.1371/journal.pone.0245250
Moor, Julia; Wüthrich, Tsering; Aebi, Susanne; Mostacci, Nadezda; Overesch, Gudrun; Oppliger, Anne; Hilty, Markus (2021). Influence of pig farming on human Gut Microbiota: role of airborne microbial communities. Gut microbes, 13(1), pp. 1-13. Taylor & Francis Group 10.1080/19490976.2021.1927634
Werren, Joel P.; Troxler, Lukas J.; Oyewole, Oluwaseun Rume-Abiola; Ramette, Alban; Brugger, Silvio D.; Bruggmann, Rémy; van der Linden, Mark; Nahm, Moon H.; Gjuroski, Ilche; Casanova, Carlo; Furrer, Julien; Hilty, Markus (2021). Carbon Source-Dependent Changes of the Structure of Streptococcus pneumoniae Capsular Polysaccharide with Serotype 6F. International journal of molecular sciences, 22(9) MDPI 10.3390/ijms22094580
Hilty, Markus; Wüthrich, Tsering M.; Godel, Aurélie; Adelfio, Roberto; Aebi, Susanne; Burgener, Sabrina S.; Illgen-Wilcke, Brunhilde; Benarafa, Charaf (2020). Chronic cigarette smoke exposure and pneumococcal infection induce oropharyngeal microbiota dysbiosis and contribute to long-lasting lung damage in mice. Microbial genomics, 6(12) Microbiology Society 10.1099/mgen.0.000485
Kaiser-Thom, S.; Hilty, Markus; Gerber, V. (2020). Effects of hypersensitivity disorders and environmental factors on the equine intestinal microbiota. The veterinary quarterly, 40(1), pp. 97-107. Taylor & Francis 10.1080/01652176.2020.1745317
Troxler, Lukas J.; Werren, Joel P.; Schaffner, Thierry O.; Mostacci, Nadezda; Vermathen, Peter; Vermathen, Martina; Wüthrich, Daniel; Simillion, Cedric; Brugger, Silvio D.; Bruggmann, Rémy; Hathaway, Lucy J.; Furrer, Julien; Hilty, Markus (2019). Carbon source regulates polysaccharide capsule biosynthesis in Streptococcus pneumoniae. Journal of biological chemistry, 294(46), pp. 17224-17238. American Society for Biochemistry and Molecular Biology 10.1074/jbc.RA119.010764
Boelsen, Laura K; Dunne, Eileen M; Mika, Moana; Eggers, Stefanie; Nguyen, Cattram D; Ratu, F Tupou; Russell, Fiona M; Mulholland, E Kim; Hilty, Markus; Satzke, Catherine (2019). The association between pneumococcal vaccination, ethnicity, and the nasopharyngeal microbiota of children in Fiji. Microbiome, 7(1), p. 106. BioMed Central 10.1186/s40168-019-0716-4
Krämer, Julia Gabriele; Aebi, Susanne; Oppliger, Anne; Hilty, Markus (2019). Indoor air microbiota of pig farms drives the composition of the pig farmer's nasal microbiota in a season dependent and farm specific manner. Applied and environmental microbiology, 85(9) American Society for Microbiology 10.1128/AEM.03038-18
Korten, Insa; Ramsey, Kathryn; Mika, Moana; Usemann, Jakob; Frey, Urs; Hilty, Markus; Latzin, Philipp (2019). Nasal Microbiota and Respiratory Tract Infections: The Role of Viral Detection. American journal of respiratory and critical care medicine, 199(7), pp. 919-922. American Lung Association 10.1164/rccm.201710-2020LE
do Couto Pires, João Pedro; Kraemer, Julia G.; Kuenzli, Esther; Kasraian, Sara; Tinguely, Regula; Hatz, Christoph; Endimiani, Andrea; Hilty, Markus (2019). Gut microbiota dynamics in travelers returning from India colonized with extended-spectrum cephalosporin-resistant Enterobacteriaceae: A longitudinal study. Travel medicine and infectious disease, 27, pp. 72-80. Elsevier 10.1016/j.tmaid.2018.10.012
Allemann, Aurélie; Krämer, Julia G.; Korten, Insa; Ramsey, Kathryn; Casaulta, Carmen; Wüthrich, Daniel; Ramette, Alban Nicolas; Endimiani, Andrea; Latzin, Philipp; Hilty, Markus (2019). Nasal Resistome Development in Infants With Cystic Fibrosis in the First Year of Life. Frontiers in Microbiology, 10(212), p. 212. Frontiers 10.3389/fmicb.2019.00212
Sommerstein, Rami; Merz, Tobias M.; Berger, Sabine; Krämer, Julia G.; Marschall, Jonas; Hilty, Markus (2019). Patterns in the longitudinal oropharyngeal microbiome evolution related to ventilator-associated pneumonia. Antimicrobial Resistance and Infection Control, 8, p. 81. BioMed Central 10.1186/s13756-019-0530-6
Brugger, Silvio D.; Kraemer, Julia G.; Qi, Weihong; Bomar, Lindsey; Oppliger, Anne; Hilty, Markus (2019). Age-Dependent Dissimilarity of the Nasopharyngeal and Middle Ear Microbiota in Children With Acute Otitis Media. Frontiers in genetics, 10(555), p. 555. Frontiers Media SA 10.3389/fgene.2019.00555
Neumann, Roland P; Hilty, Markus; Xu, Binbin; Usemann, Jakob; Korten, Insa; Mika, Moana; Müller, Loretta; Latzin, Philipp; Frey, Urs (2018). Nasal microbiota and symptom persistence in acute respiratory tract infections in infants. ERJ Open Research, 4(4) European Respiratory Society 10.1183/23120541.00066-2018
Mika, Moana; Nita, Izabela Magdalena; Morf, Laura Ursina; Qi, Weihong; Beyeler, Seraina Martina; Bernasconi, Eric; Marsland, Benjamin J; Ott, Sebastian Robert; von Garnier, Christophe; Hilty, Markus (2018). Microbial and host immune factors as drivers of COPD. ERJ Open Research, 4(3) European Respiratory Society 10.1183/23120541.00015-2018
Kraemer, Julia G; Ramette, Alban; Aebi, Suzanne; Oppliger, Anne; Hilty, Markus (2018). Influence of pig farming on the human's nasal microbiota: The key role of the airborne microbial communities. Applied and environmental microbiology, 84(6) American Society for Microbiology 10.1128/AEM.02470-17
Korten, Insa; Kieninger, Elisabeth; Klenja, Shkipe; Mack, Ines; Schläpfer, Njima; Barbani, Maria Teresa; Regamey, Nicolas; Kuehni, Claudia E; Hilty, Markus; Frey, Urs; Gorgievski, Meri; Casaulta Aebischer, Carmen; Latzin, Philipp (2018). Respiratory viruses in healthy infants and infants with cystic fibrosis: a prospective cohort study. Thorax, 73(1), pp. 13-20. BMJ Publishing Group 10.1136/thoraxjnl-2016-209553
Krämer, Julia; Do Couto Pires, Joao Pedro; Küffer, Marianne; Semaani, Eulalia; Endimiani, Andrea; Hilty, Markus; Oppliger, Anne (2017). Prevalence of extended-spectrum β-lactamase-producing Enterobacteriaceae and Methicillin-Resistant Staphylococcus aureus in pig farms in Switzerland. The Science of the total environment, 603-604, pp. 401-405. Elsevier 10.1016/j.scitotenv.2017.06.110
Kapatai, Georgia; Sheppard, Carmen L.; Troxler, Lukas Jeremiah; Litt, David J.; Furrer, Julien; Hilty, Markus; Fry, Norman K. (2017). Pneumococcal 23B Molecular Subtype Identified Using Whole Genome Sequencing. Genome biology and evolution, 9(8), pp. 2145-2158. Oxford University Press 10.1093/gbe/evx092
Mika, Moana; Maurer, Josua; Korten, Insa Christina Severine; Allemann, Aurélie; Aebi, Suzanne; Brugger, Silvio D; Qi, Weihong; Frey, Urs; Latzin, Philipp; Hilty, Markus (2017). Influence of the pneumococcal conjugate vaccines on the temporal variation of pneumococcal carriage and the nasal microbiota in healthy infants: a longitudinal analysis of a case-control study. Microbiome, 5(1), p. 85. BioMed Central 10.1186/s40168-017-0302-6
Allemann, Aurélie; Frey, Pascal Marcel; Brugger, Silvio D; Hilty, Markus (2017). Pneumococcal carriage and serotype variation before and after introduction of pneumococcal conjugate vaccines in patients with acute otitis media in Switzerland. Vaccine, 35(15), pp. 1946-1953. Elsevier 10.1016/j.vaccine.2017.02.010
Endimiani, Andrea; Allemann, Aurélie; Wüthrich, Daniel; Lupo, Agnese; Hilty, Markus (2017). First report of the macrolide efflux genetic assembly (MEGA) element in Haemophilus parainfluenzae. International journal of antimicrobial agents, 49(2), pp. 265-266. Elsevier 10.1016/j.ijantimicag.2016.11.006
Brugger, Silvio; Troxler, Lukas; Rüfenacht, Susanne; Frey, Pascal Marcel; Morand, Brigitte; Geyer, Rudolf; Mühlemann, Kathrin; Höck, Stefan; Thormann, Wolfgang; Furrer, Julien; Christen, Stephan; Hilty, Markus (2016). Polysaccharide capsule composition of pneumococcal serotype 19A subtypes: Unaltered among subtypes and independent of the nutritional environment. Infection and immunity, 84(11), pp. 3152-3160. American Society for Microbiology 10.1128/IAI.00474-16
Do Couto Pires, Joao Pedro; Bernasconi, Odette Joëlle; Kasraian Fard, Sara; Hilty, Markus; Perreten, Vincent; Endimiani, Andrea (2016). Intestinal colonisation with extended-spectrum cephalosporin-resistant Escherichia coli in Swiss pets: molecular features, risk factors and transmission with owners. International journal of antimicrobial agents, 48(6), pp. 759-760. Elsevier 10.1016/j.ijantimicag.2016.08.007
Hauser, Christoph; Kronenberg, Andreas; Allemann, Aurélie; Mühlemann, Kathrin; Hilty, Markus (2016). Serotype/serogroup-specific antibiotic non-susceptibility of invasive and non-invasive Streptococcus pneumoniae, Switzerland, 2004 to 2014. Euro surveillance, 21(21) Institut de Veille Sanitaire 10.2807/1560-7917.ES.2016.21.21.30239
Mika, Moana; Korten, Insa Christina Severine; Qi, Weihong; Regamey, Nicolas; Frey, Urs; Casaulta Aebischer, Carmen; Latzin, Philipp; Hilty, Markus (2016). The nasal microbiota in infants with cystic fibrosis in the first year of life: a prospective cohort study. The lancet. Respiratory medicine, 4(8), pp. 627-635. Elsevier 10.1016/S2213-2600(16)30081-9
Pires, João; Kuenzli, Esther; Kasraian Fard, Sara; Tinguely, Regula; Furrer, Hansjakob; Hilty, Markus; Hatz, Christoph; Endimiani, Andrea (2016). Polyclonal Intestinal Colonization with Extended-Spectrum Cephalosporin-Resistant Enterobacteriaceae upon Traveling to India. Frontiers in Microbiology, 7(1069), p. 1069. Frontiers 10.3389/fmicb.2016.01069
Korten, Insa Christina Severine; Mika, Moana; Klenja, Shkipe; Kieninger, Elisabeth; Mack, Ines; Barbani, Maria Teresa; Gorgievski, Meri; Frey, Urs; Hilty, Markus; Latzin, Philipp (2016). Interactions of Respiratory Viruses and the Nasal Microbiota during the First Year of Life in Healthy Infants. mSphere, 1(6) American Society for Microbiology 10.1128/mSphere.00312-16
Schneider, Sarah; Tinguely, Regula; Droz, Sara Christine; Hilty, Markus; Donà, Valentina; Bodmer, Thomas; Endimiani, Andrea (2015). Antibiotic Susceptibility and Sequence Type Distribution of Ureaplasma Species Isolated from Genital Samples in Switzerland. Antimicrobial agents and chemotherapy, 59(10), pp. 6026-6031. American Society for Microbiology 10.1128/AAC.00895-15
Mika, Moana; Mack, Ines; Korten, Insa Christina Severine; Qi, Weihong; Aebi, Susanne; Frey, Urs Peter; Latzin, Philipp; Hilty, Markus (2015). Dynamics of the nasal microbiota in infancy: A prospective cohort study. Journal of allergy and clinical immunology, 135(4), 905-912.e11. Mosby 10.1016/j.jaci.2014.12.1909
Hilty, Markus; Wüthrich, Daniel; Salter, Susannah J; Engel, Hans Jürg; Campbell, Samuel; Sá-Leão, Raquel; de Lencastre, Hermínia; Hermans, Peter; Sadowy, Ewa; Turner, Paul; Chewapreecha, Claire; Diggle, Mathew; Pluschke, Gerd; McGee, Lesley; Eser, Ozgen Köseoğlu; Low, Donald E; Smith-Vaughan, Heidi; Endimiani, Andrea; Küffer, Marianne; Dupasquier, Mélanie; ... (2014). Global phylogenomic analysis of nonencapsulated Streptococcus pneumoniae reveals a deep-branching classic lineage that is distinct from multiple sporadic lineages. Genome biology and evolution, 6(12), pp. 3281-3294. Oxford University Press 10.1093/gbe/evu263
Morf, Laura Ursina; Beyeler, Seraina Martina; Mika, Moana; Bernasconi, Eric; Marsland, Benjamin; Hilty, Markus; Von Garnier, Christophe (5 November 2014). Dysregulation of the lung microbiota in chronic obstructive pulmonary disease (Unpublished). In: Day of Clinical Research. Bern. 05.11.2014.
Morf, Laura Ursina; Beyeler, Seraina Martina; Mika, Moana; Bernasconi, Eric; Marsland, Benjamin; Hilty, Markus; Von Garnier, Christophe (5 November 2014). Dysregulation of the lung microbiota in chronic obstructive pulmonary disease (Unpublished). In: Day of Clinical Research. Bern. 05.11.2014.
Schaffner, Thierry Oliver; Hinds, Jason; Gould, Katherine A; Wüthrich, Daniel; Bruggmann, Rémy; Küffer, Marianne; Mühlemann, Kathrin; Hilty, Markus; Hathaway, Lucy Jane (2014). A point mutation in cpsE renders Streptococcus pneumoniae nonencapsulated and enhances its growth, adherence and competence. BMC microbiology, 14(210), p. 210. BioMed Central 10.1186/s12866-014-0210-x
Meichtry, Jurka; Born, Rita; Küffer, Marianne; Zwahlen, Marcel; Albrich, Werner C.; Brugger, Silvio; Mühlemann, Kathrin; Hilty, Markus (2014). Serotype epidemiology of invasive pneumococcal disease in Swiss adults: A nationwide population-based study. Vaccine, 32(40), pp. 5185-5191. Elsevier 10.1016/j.vaccine.2014.07.060
Engel, Hans Jürg; Mika, Moana; Denapaite, Dalia; Hakenbeck, Regine; Mühlemann, Kathrin; Heller, Manfred; Hathaway, Lucy Jane; Hilty, Markus (2014). A low affinity penicillin-binding protein 2x is required for heteroresistance in Streptococcus pneumoniae. Antimicrobial agents and chemotherapy, 58(7), pp. 3934-3941. American Society for Microbiology 10.1128/AAC.02547-14
Küng, Eliane; Coward, William R.; Neill, Daniel R.; Malak, Hesham A.; Mühlemann, Kathrin; Kadioglu, Aras; Hilty, Markus; Hathaway, Lucy Jane (2014). The Pneumococcal Polysaccharide Capsule and Pneumolysin Differentially Affect CXCL8 and IL-6 Release from Cells of the Upper and Lower Respiratory Tract. PLoS ONE, 9(3), e92355. Public Library of Science 10.1371/journal.pone.0092355
Garzoni, Christian; Brugger, Silvio D.; Qi, W.; Wasmer Rueff, Sarah Patricia; Cusini, Alexia; Dumont, P.; Gorgievski, Meri; Mühlemann, Kathrin; Von Garnier, Christophe; Hilty, Markus (2013). Microbial communities in the respiratory tract of patients with interstitial lung disease. Thorax, 68(12), pp. 1150-1156. BMJ Publishing Group 10.1136/thoraxjnl-2012-202917
Kronenberg, Andreas; Hilty, M.; Endimiani, A.; Mühlemann, Kathrin (2013). Temporal trends of extended-spectrum cephalosporin-resistant Escherichia coli and Klebsiella pneumoniae isolates in in- and outpatients in Switzerland, 2004 to 2011. Euro surveillance, 18(21), p. 20484. Institut de Veille Sanitaire
Engel, Hansjürg; Gutiérrez-Fernández, Javier; Flückiger, Christine; Martínez-Ripoll, Martín; Mühlemann, Kathrin; Hermoso, Juan A; Hilty, Markus; Hathaway, Lucy Jane (2013). Heteroresistance to Fosfomycin Is Predominant in Streptococcus pneumoniae and Depends on the murA1 Gene. Antimicrobial agents and chemotherapy, 57(6), pp. 2801-8. Washington, D.C.: American Society for Microbiology 10.1128/AAC.00223-13
Hilty, Markus; Sendi, Parham; Seiffert, Salome Nadja; Droz, Sara Christine; Perreten, Vincent; Hujer, Andrea M; Bonomo, Robert A; Mühlemann, Kathrin; Endimiani, Andrea (2013). Characterisation and clinical features of Enterobacter cloacae bloodstream infections occurring at a tertiary care university hospital in Switzerland: is cefepime adequate therapy? International journal of antimicrobial agents, 41(3), pp. 236-49. Amsterdam: Elsevier 10.1016/j.ijantimicag.2012.10.022
Seiffert, Salome Nadja; Hilty, Markus; Kronenberg, Andreas; Droz, Sara Christine; Perreten, Vincent; Endimiani, Andrea (2013). Extended-spectrum cephalosporin-resistant Escherichia coli in community, specialized outpatient clinic and hospital settings in Switzerland. Journal of antimicrobial chemotherapy, 68(10), pp. 2249-2254. Oxford University Press 10.1093/jac/dkt208
Seiffert, Salome Nadja; Hilty, Markus; Perreten, Vincent; Endimiani, Andrea (2013). Extended-spectrum cephalosporin-resistant Gram-negative organisms in livestock: an emerging problem for human health? Drug Resistance Updates, 16(1-2), pp. 22-45. Churchill Livingstone 10.1016/j.drup.2012.12.001
Hilty, Markus; Qi, Weihong; Brugger, Silvio D; Frei, Laurence; Agyeman, Philipp; Frey, Pascal M; Aebi, Suzanne; Mühlemann, Kathrin (2012). Nasopharyngeal microbiota in infants with acute otitis media. Journal of infectious diseases, 205(7), pp. 1048-55. Cary, N.C.: Oxford University Press 10.1093/infdis/jis024
Hilty, Markus; Betsch, Belinda Y; Bögli-Stuber, Katja; Heiniger, Nadja; Stadler, Markus; Küffer, Marianne; Kronenberg, Andreas; Rohrer, Christine; Aebi, Suzanne; Endimiani, Andrea; Droz, Sara; Mühlemann, Kathrin (2012). Transmission dynamics of extended-spectrum β-lactamase-producing Enterobacteriaceae in the tertiary care hospital and the household setting. Clinical infectious diseases, 55(7), pp. 967-75. Cary, N.C.: Oxford University Press 10.1093/cid/cis581
Endimiani, Andrea; Hilty, Markus; Perreten, Vincent (2012). CMY-2-producing Escherichia coli in the nose of pigs. Antimicrobial agents and chemotherapy, 56(8), pp. 4556-7. Washington, D.C.: American Society for Microbiology 10.1128/AAC.00389-12
Brugger, Silvio D.; Frei, Laurence; Frey, Pascal M; Aebi, Suzanne; Mühlemann, Kathrin; Hilty, Markus (2012). 16S rRNA terminal restriction fragment length polymorphism for the characterization of the nasopharyngeal microbiota. PLoS ONE, 7(12), e52241. Lawrence, Kans.: Public Library of Science 10.1371/journal.pone.0052241
