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Meier, Joana; McGee, Matthew D; Marques, David A; Mwaiko, Salome; Kishe, Mary; Wandera, Sylvester; Neumann, Dirk; Mrosso, Hilary; Chapman, Lauren J; Chapman, Colin A; Kaufman, Les; Taabu-Munyaho, Anthony; Wagner, Catherine E; Bruggmann, Rémy; Excoffier, Laurent; Seehausen, Ole (2023). Cycles of fusion and fission enabled rapid parallel adaptive radiations in African cichlids. Science, 381(6665), eade2833. American Association for the Advancement of Science 10.1126/science.ade2833
Marques, David A; Jones, Felicity C; Palma, Federica Di; Kingsley, David M; Reimchen, Thomas E (2022). Genomic changes underlying repeated niche shifts in an adaptive radiation. Evolution, 76(6), pp. 1301-1319. Wiley 10.1111/evo.14490
De-Kayne, Rishi; Selz, Oliver M; Marques, David A; Frei, David; Seehausen, Ole; Feulner, Philine G D (2022). Genomic architecture of adaptive radiation and hybridization in Alpine whitefish. Nature Communications, 13(1), p. 4479. Springer Nature 10.1038/s41467-022-32181-8
Hudson, Cameron M.; Lucek, Kay; Marques, David A.; Alexander, Timothy J.; Moosmann, Marvin; Spaak, Piet; Seehausen, Ole; Matthews, Blake (2021). Threespine Stickleback in Lake Constance: The Ecology and Genomic Substrate of a Recent Invasion. Frontiers in ecology and evolution, 8 Frontiers Media 10.3389/fevo.2020.611672
Svensson, Erik I.; Arnold, Stevan J.; Bürger, Reinhard; Csilléry, Katalin; Draghi, Jeremy; Henshaw, Jonathan M.; Jones, Adam G.; De Lisle, Stephen; Marques, David A.; McGuigan, Katrina; Simon, Monique N.; Runemark, Anna (2021). Correlational selection in the age of genomics. Nature ecology & evolution, 5(5), pp. 562-573. Nature Publishing Group 10.1038/s41559-021-01413-3
Marques, David A.; Lucek, Kay; Sousa, Vitor C.; Excoffier, Laurent; Seehausen, Ole (2021). Reply to "Re-evaluating the evidence for facilitation of stickleback speciation by admixture in the Lake Constance basin". Nature Communications, 12(1), p. 2807. Springer Nature 10.1038/s41467-021-23096-x
Freudiger, Annika; Josi, Dario; Thünken, Timo; Herder, Fabian; Flury, Jana M.; Marques, David A.; Taborsky, Michael; Frommen, Joachim G. (2021). Ecological variation drives morphological differentiation in a highly social vertebrate. Functional ecology, 35(10), pp. 2266-2281. Wiley 10.1111/1365-2435.13857
Excoffier, Laurent; Marchi, Nina; Marques, David Alexander; Matthey-Doret, Remi; Gouy, Alexandre; Sousa, Vitor C. (2021). fastsimcoal2 : demographic inference under complex evolutionary scenarios. Bioinformatics, 37(24), pp. 4882-4885. Oxford University Press 10.1093/bioinformatics/btab468
Liu, Zuyao; Roesti, Marius; Marques, David; Hiltbrunner, Melanie; Saladin, Verena; Peichel, Catherine L (2021). Chromosomal fusions facilitate adaptation to divergent environments in threespine stickleback (Submitted). Molecular Biology and Evolution Oxford University Press 10.1093/molbev/msab358
Mc Gee, Matthew D.; Borstein, Samuel R.; Meier, Joana I.; Marques, David A.; Mwaiko, Salome; Taabu, Anthony; Kishe, Mary A.; O’Meara, Brian; Bruggmann, Rémy; Excoffier, Laurent; Seehausen, Ole (2020). The ecological and genomic basis of explosive adaptive radiation. Nature, 586(7827), pp. 75-79. Springer Nature 10.1038/s41586-020-2652-7
Marques, David Alexander; Meier, Joana; Seehausen, Ole (2019). A Combinatorial View on Speciation and Adaptive Radiation. Trends in ecology & evolution, 34(6), pp. 531-544. Elsevier 10.1016/j.tree.2019.02.008
Ishikawa, Asano; Kabeya, Naoki; Ikeya, Koki; Kakioka, Ryo; Cech, Jennifer N.; Osada, Naoki; Leal, Miguel C.; Inoue, Jun; Kume, Manabu; Toyoda, Atsushi; Tezuka, Ayumi; Nagano, Atsushi J.; Yamasaki, Yo Y.; Suzuki, Yuto; Kokita, Tomoyuki; Takahashi, Hiroshi; Lucek, Kay; Marques, David; Takehana, Yusuke; Naruse, Kiyoshi; ... (2019). A key metabolic gene for recurrent freshwater colonization and radiation in fishes. Science, 364(6443), pp. 886-889. American Association for the Advancement of Science 10.1126/science.aau5656
Marques, David A.; Lucek, Kay; Sousa, Vitor; Excoffier, Laurent; Seehausen, Ole (2019). Admixture between old lineages facilitated contemporary ecological speciation in Lake Constance stickleback. Nature communications, 10(1) Nature Publishing Group 10.1038/s41467-019-12182-w
Meier, Joana; Marques, David Alexander; Wagner, Catherine Elise; Excoffier, Laurent; Seehausen, Ole (2018). Genomics of Parallel Ecological Speciation in Lake Victoria Cichlids. Molecular Biology and Evolution, 35(6), pp. 1489-1506. Oxford University Press 10.1093/molbev/msy051
Marques, David Alexander; Jones, Felicity C.; Di Palma, Federica; Kingsley, David M.; Reimchen, Thomas E. (2018). Experimental evidence for rapid genomic adaptation to a new niche in an adaptive radiation. Nature ecology & evolution, 2(7), pp. 1128-1138. Nature Publishing Group 10.1038/s41559-018-0581-8
Meier, Joana; Marques, David Alexander; Mwaiko, Salome; Wagner, Catherine; Excoffier, Laurent; Seehausen, Ole (2017). Ancient hybridization fuels rapid cichlid fish adaptive radiations. Nature communications, 8(14363), p. 14363. Nature Publishing Group 10.1038/ncomms14363
Peichel, Catherine; Marques, David Alexander (2017). The genetic and molecular architecture of phenotypic diversity in sticklebacks. Philosophical transactions of the Royal Society. Series B - biological sciences, 372(1713) Royal Society of London 10.1098/rstb.2015.0486
Marques, David Alexander (2017). Adaptation despite gene flow? Low recombination helps. Molecular Ecology, 26(17), pp. 4361-4363. Wiley-Blackwell 10.1111/mec.14251
Nater, Alexander; Mattle-Greminger, Maja P.; Nurcahyo, Anton; Nowak, Matthew G.; de Manuel, Marc; Desai, Tariq; Groves, Colin; Pybus, Marc; Sonay, Tugce Bilgin; Roos, Christian; Lameira, Adriano R.; Wich, Serge A.; Askew, James; Davila-Ross, Marina; Fredriksson, Gabriella; de Valles, Guillem; Casals, Ferran; Prado-Martinez, Javier; Goossens, Benoit; Verschoor, Ernst J.; ... (2017). Morphometric, Behavioral, and Genomic Evidence for a New Orangutan Species. Current Biology, 27(22), 3487-3498.e10. Cell Press 10.1016/j.cub.2017.09.047
Marques, David Alexander; Lucek, Kay Jurka Olaf; Meier, Joana; Mwaiko, Salome; Wagner, Catherine; Excoffier, Laurent; Seehausen, Ole (2016). Genomics of Rapid Incipient Speciation in Sympatric Threespine Stickleback. PLoS genetics, 12(2), e1005887. Public Library of Science 10.1371/journal.pgen.1005887
Feller, Anna Fiona; Seehausen, Ole; Lucek, Kay Jurka Olaf; Marques, David Alexander (2016). Habitat Choice and Female Preference in a Polymorphic Stickleback Population (In Press). Evolutionary ecology research Evolutionary Ecology
Marques, David Alexander; Lucek, Kay Jurka Olaf; Häsler, Marcel; Feller, Anna Fiona; Meier, Joana; Wagner, Catherine; Excoffier, Laurent; Seehausen, Ole (2016). Genomic landscape of early ecological speciation initiated by selection on nuptial colour. Molecular Ecology, 26(1), pp. 7-24. Wiley-Blackwell 10.1111/mec.13774
Meier, Joana; Martins Conde e Sousa, Vitor; Marques, David Alexander; Selz, Oliver; Wagner, Catherine; Excoffier, Laurent; Seehausen, Ole (2016). Demographic modeling with whole genome data reveals parallel origin of similar Pundamilia cichlid species after hybridization. Molecular Ecology, 26(1), pp. 123-141. Wiley-Blackwell 10.1111/mec.13838
Karvonen, Anssi; Lucek, Kay Jurka Olaf; Marques, David Alexander; Seehausen, Ole (2015). Divergent Macroparasite Infections in Parapatric Swiss Lake-Stream Pairs of Threespine Stickleback (Gasterosteus aculeatus). PLoS ONE, 10(6), e0130579. Public Library of Science 10.1371/journal.pone.0130579
Seehausen, Ole; Butlin, Roger K.; Keller, Irene; Wagner, Catherine; Boughman, Janette W.; Hohenlohe, Paul A.; Peichel, Catherine L.; Saetre, Glenn-Peter; Bank, Claudia; Brännström, Åke; Brelsford, Alan; Clarkson, Chris S.; Eroukhmanoff, Fabrice; Feder, Jeffrey L.; Fischer, Martin; Foote, Andrew D.; Franchini, Paolo; Jiggins, Chris D.; Jones, Felicity C.; Lindholm, Anna K.; ... (2014). Genomics and the origin of species. Nature Reviews. Genetics, 15(3), pp. 176-192. Natue Publishing Group 10.1038/nrg3644
