Riou, Julien Yannis

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Grinsztajn, Léo; Semenova, Elizaveta; Margossian, Charles C; Riou, Julien (2021). Bayesian workflow for disease transmission modeling in Stan [tutorial]. Statistics in medicine, 40(27), pp. 6209-6234. Wiley-Blackwell 10.1002/sim.9164

Riou, Julien; Dupont, Carole; Bertagnolio, Silvia; Gupta, Ravindra K; Kouyos, Roger D; Egger, Matthias; Althaus, Christian L. (2021). Drivers of HIV-1 drug resistance to non-nucleoside reverse-transcriptase inhibitors (NNRTIs) in nine southern African countries: a modelling study. BMC infectious diseases, 21(1), p. 1042. BioMed Central 10.1186/s12879-021-06757-6

Riou, Julien; Panczak, Radoslaw; Althaus, Christian L; Junker, Christoph; Perisa, Damir; Schneider, Katrin; Criscuolo, Nicola G; Low, Nicola; Egger, Matthias (2021). Socioeconomic position and the COVID-19 care cascade from testing to mortality in Switzerland: a population-based analysis. The lancet. Public health, 6(9), e683-e691. Elsevier 10.1016/S2468-2667(21)00160-2

Zelner, Jon; Riou, Julien; Etzioni, Ruth; Gelman, Andrew (2021). Accounting for uncertainty during a pandemic. Patterns, 2(8), p. 100310. Cell Press 10.1016/j.patter.2021.100310

Dhokotera, Tafadzwa; Riou, Julien; Bartels, Lina; Rohner, Eliane; Chammartin, Frédérique; Leigh, Johnson; Elvira, Singh; Victor, Olago; Mazvita, Sengayi-Muchengeti; Egger, Matthias; Bohlius, Julia; Konstantinoudis, Garyfallos (2021). Spatiotemporal modelling and mapping of cervical cancer incidence among HIV positive women in South Africa: a nationwide study. International journal of health geographics, 20(1), p. 30. BioMed Central 10.1186/s12942-021-00283-z

Bouman, Judith A; Riou, Julien; Bonhoeffer, Sebastian; Regoes, Roland R (2021). Estimating the cumulative incidence of SARS-CoV-2 with imperfect serological tests: Exploiting cutoff-free approaches. PLoS computational biology, 17(2), e1008728. Public Library of Science 10.1371/journal.pcbi.1008728

Hovaguimian, Frédérique; Günthard, Huldrych F; Hauser, Christoph; Conen, Anna; Bernasconi, Enos; Calmy, Alexandra; Cavassini, Matthias; Seneghini, Marco; Marzel, Alex; Heinrich, Henriette; Scherrer, Alexandra; Riou, Julien; Spoerri, Adrian; Schmidlin, Kurt; Balakrishna, Suraj; Braun, Dominique L; Rampini, Silvana K; Fehr, Jan S; Kouyos, Roger D (2021). Data linkage to evaluate the long-term risk of HIV infection in individuals seeking post-exposure prophylaxis. Nature communications, 12(1), p. 1219. Nature Publishing Group 10.1038/s41467-021-21485-w

Ujeneza, Eva Liliane; Ndifon, Wilfred; Sawry, Shobna; Fatti, Geoffrey; Riou, Julien Yannis; Davies, Mary-Ann; Nieuwoudt, Martin (2021). A mechanistic model for long-term immunological outcomes in South African HIV-infected children and adults receiving ART. eLife, 10, e42390. eLife Sciences Publications 10.7554/eLife.42390


Hauser, Anthony; Kusejko, Katharina; Johnson, Leigh F; Günthard, Huldrych F; Riou, Julien; Wandeler, Gilles; Egger, Matthias; Kouyos, Roger D (2020). Impact of scaling up dolutegravir on antiretroviral resistance in South Africa: A modeling study. PLoS medicine, 17(12), e1003397. Public Library of Science 10.1371/journal.pmed.1003397

Salathé, Marcel; Althaus, Christian L; Anderegg, Nanina; Antonioli, Daniele; Ballouz, Tala; Bugnon, Edouard; Čapkun, Srdjan; Jackson, Dennis; Kim, Sang-Il; Larus, Jim; Low, Nicola; Lueks, Wouter; Menges, Dominik; Moullet, Cédric; Payer, Mathias; Riou, Julien; Stadler, Theresa; Troncoso, Carmela; Vayena, Effy and von Wyl, Viktor (2020). Early evidence of effectiveness of digital contact tracing for SARS-CoV-2 in Switzerland. Swiss medical weekly, 150, w20457. EMH Schweizerischer Ärzteverlag 10.4414/smw.2020.20457

Zürcher, Kathrin; Morrow, Carl; Riou, Julien; Ballif, Marie; Koch, Anastasia Sideris; Bertschinger, Simon; Liu, Xin; Sharma, Manuja; Middelkoop, Keren; Warner, Digby; Wood, Robin; Egger, Matthias; Fenner, Lukas (2020). Novel approach to estimate tuberculosis transmission in primary care clinics in sub-Saharan Africa: protocol of a prospective study. BMJ open, 10(8), e036214. BMJ Publishing Group 10.1136/bmjopen-2019-036214

Hauser, Anthony; Counotte, Michel J.; Margossian, Charles C; Konstantinoudis, Garyfallos; Low, Nicola; Althaus, Christian L.; Riou, Julien (2020). Estimation of SARS-CoV-2 mortality during the early stages of an epidemic: A modeling study in Hubei, China, and six regions in Europe. PLoS medicine, 17(7), e1003189. Public Library of Science 10.1371/journal.pmed.1003189

Riou, Julien; Althaus, Christian L (2020). Pattern of early human-to-human transmission of Wuhan 2019 novel coronavirus (2019-nCoV), December 2019 to January 2020. Eurosurveillance, 25(4), pii=2000058. European Centre for Disease Prevention and Control 10.2807/1560-7917.ES.2020.25.4.2000058


Counotte, Michel J; Althaus, Christian L; Low, Nicola; Riou, Julien (2019). Impact of age-specific immunity on the timing and burden of the next Zika virus outbreak. PLoS neglected tropical diseases, 13(12), e0007978. Public Library of Science 10.1371/journal.pntd.0007978

Hauser, Anthony; Kusejko, Katharina; Johnson, Leigh F; Wandeler, Gilles; Riou, Julien; Goldstein, Fardo; Egger, Matthias; Kouyos, Roger D (2019). Bridging the gap between HIV epidemiology and antiretroviral resistance evolution: Modelling the spread of resistance in South Africa. PLoS computational biology, 15(6), e1007083. Public Library of Science 10.1371/journal.pcbi.1007083

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