Sznitman, Raphael

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2019

Hu, Suyi; Anschütz, Lukas Peter; Huth, Markus; Sznitman, Raphael; Blaser, Daniela; Kompis, Martin; Hall, Deborah A; Caversaccio, Marco; Wimmer, Wilhelm (2019). Association Between Residual Inhibition and Neural Activity in Patients with Tinnitus: Protocol for a Controlled Within- and Between-Subject Comparison Study. JMIR research protocols, 8(1), e12270. JMIR Publications 10.2196/12270

Giannakaki-Zimmermann, Helena; Huf, Wolfgang; Schaal, Karen Beate; Schürch, Kaspar Werner; Dysli, Chantal-Simone; Dysli, Denise-Muriel; Zenger, Anita; Ceklic, Lala; Ciller, Carlos; Apostolopoulos, Stefanos; De Zanet, Sandro; Sznitman, Raphael; Ebneter, Andreas; Zinkernagel, Martin; Wolf, Sebastian; Munk, Marion (2019). Comparison of Choroidal Thickness Measurements Using Spectral Domain Optical Coherence Tomography in Six Different Settings and With Customized Automated Segmentation Software. Translational vision science & technology, 8(3), p. 5. Association for Research in Vision and Ophthalmology 10.1167/tvst.8.3.5

Kucur, Serife Seda; Márquez Neila, Pablo; Abegg, Mathias; Sznitman, Raphael (2019). Patient-attentive sequential strategy for perimetry-based visual field acquisition. Medical image analysis, 54, pp. 179-192. Elsevier 10.1016/j.media.2019.03.002

Konyushkova, Ksenia; Sznitman, Raphael; Fua, Pascal (2019). Geometry in active learning for binary and multi-class image segmentation. Computer vision and image understanding, 182, pp. 1-16. Elsevier 10.1016/j.cviu.2019.01.007

2018

Gupta, Ankit; Paolucci, Iwan; Sznitman, Raphael; Weber, Stefan; Candinas, Daniel (4 September 2018). Video based instrument pose tracking in navigated laparoscopic surgery (Unpublished). In: International Hepato-Pancreato-Biliary Association Congress 2018. Geneva. 4-7 September 2018.

Fountoukidou, Tatiana; Raisin, Philippe Richard; Kaufmann, Daniel; Justiz, Jorn; Sznitman, Raphael; Wolf, Sebastian (2018). Motion-invariant SRT treatment detection from direct M-scan OCT imaging. International Journal of Computer Assisted Radiology and Surgery, 13(5), pp. 683-691. Springer 10.1007/s11548-018-1720-z

Glowacki, Przemyslaw; Pinheiro, Miguel Amavel; Mosinska, Agata; Turetken, Engin; Lebrecht, Daniel; Holtmaat, Anthony; Sznitman, Raphael; Kybic, Jan; Fua, Pascal (2018). Reconstructing Evolving Tree Structures in Time Lapse Sequences by Enforcing Time-Consistency. IEEE transactions on pattern analysis and machine intelligence, 40(3), pp. 755-761. IEEE Computer Society 10.1109/TPAMI.2017.2680444

Du, Xiaofei; Kurmann, Thomas Kevin; Chang, Ping-Lin; Allan, Maximillian; Ourselin, Sebastian; Sznitman, Raphael; Kelly, John; Stoyanov, Danail (2018). Articulated Multi-Instrument 2D Pose Estimation Using Fully Convolutional Networks. IEEE transactions on medical imaging, 37(5), pp. 1276-1287. Institute of Electrical and Electronics Engineers IEEE 10.1109/TMI.2017.2787672

Mendizabal, A; Fountoukidou, Tatiana; Hermann, Jan; Sznitman, Raphael; Cotin, S (2018). A Combined Simulation and Deep Learning Approach for Image-based Force Estimation during Robotized Intravitreal Injections (In Press). In: In Proceedings of the 20th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI).

Márquez Neila, Pablo; Fisher, Chloe Elizabeth; Sznitman, Raphael; Heng, Kevin (2018). Supervised machine learning for analysing spectra of exoplanetary atmospheres. Nature astronomy, 2(9), pp. 719-724. Nature Publishing Group 10.1038/s41550-018-0504-2

Nguyen, Huu Giao; Sznitman, Raphael; Maeder, Philippe; Schalenbourg, Ann; Peroni, Marta; Hrbacek, Jan; Weber, Damien Charles; Pica, Alessia; Bach Cuadra, Meritxell (2018). Personalized Anatomic Eye Model From T1-Weighted Volume Interpolated Gradient Echo Magnetic Resonance Imaging of Patients With Uveal Melanoma. International journal of radiation oncology, biology, physics, 102(4), pp. 813-820. Elsevier 10.1016/j.ijrobp.2018.05.004

Lejeune, Laurent Georges Pascal; Grossrieder, Jan; Sznitman, Raphael (2018). Iterative multi-path tracking for video and volume segmentation with sparse point supervision. Medical image analysis, 50, pp. 65-81. Elsevier 10.1016/j.media.2018.08.007

2017

Kurmann, Thomas Kevin; Màrquez Neila, Pablo; Du, Xiaofei; Fua, Pascal; Stoyanov, Danail; Wolf, Sebastian; Sznitman, Raphael (18 October 2017). Simultaneous Recognition and Pose Estimation of Instruments in Minimally Invasive Surgery. In: International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI). Lecture Notes in Computer Science: Vol. 10434 (pp. 505-513). Springer 10.1007/978-3-319-66185-8_57

Kucur, Serife Seda; Sznitman, Raphael (2017). Sequentially Optimized Reconstruction Strategy: A Meta-Strategy for Perimetry Testing. PLoS ONE, 12(10), pp. 1-20. Public Library of Science 10.1371/journal.pone.0185049

Apostolopoulos, Stefanos; Sznitman, Raphael (2017). Efficient OCT volume reconstruction from slitlamp microscopes. IEEE transactions on biomedical engineering, 64(10), pp. 2403-2410. Institute of Electrical and Electronics Engineers IEEE 10.1109/TBME.2017.2657884

Apostolopoulos, Stefanos; De Zanet, Sandro; Ciller, Carlos; Wolf, Sebastian; Sznitman, Raphael (16 July 2017). Pathological OCT Retinal Layer Segmentation using Branch Residual U-style Networks. In: International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI).

Lejeune, Laurent Georges Pascal; Christoudias, Mario; Sznitman, Raphael (16 July 2017). Expected exponential loss for gaze-based video and volume ground truth annotation. In: International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI), LABELS - Workshop. 10.1007/978-3-319-67534-3_12

Wild, Derk Sven Gard; Kucur, Serife Seda; Sznitman, Raphael (2017). Spatial Entropy Pursuit for Fast and Accurate Perimetry Testing. Investigative ophthalmology & visual science, 58(9), pp. 3414-3424. Association for Research in Vision and Ophthalmology 10.1167/iovs.16-21144

Ciller, Carlos; De Zanet, Sandro; Kamnitsas, Konstantinos; Maeder, Philippe; Glocker, Ben; Munier, Francis; Rueckert, Daniel; Thiran, Jean-Philippe; Bach Cuadra, Meritxell; Sznitman, Raphael (2017). Multi-channel MRI segmentation of eye structures and tumors using patient-specific features. PLoS ONE, 12(3), e0173900. Public Library of Science 10.1371/journal.pone.0173900

Konyushkova, Ksenia; Sznitman, Raphael; Fua, Pascal (2017). Learning Active Learning from Data (In Press). In: Conference on Neural Information Processing Systems (NIPS).

2016

Anso, Juan; Gerber, Kate; Gerber, Nicolas; Schwalbe, Marius; Sznitman, Raphael; Weber, Stefan; Williamson, Tom; Wimmer, Wilhelm; Nabavi, Arya (eds.) (2016). CURAC 2016 Tagungsband: 15. Jahrestagung der Deutschen Gesellschaft für Computer- und Roboterassistierte Chirurgie e.V., 29.09. – 01.10.2016, Bern. Uelvesbüll: Der Andere Verlag

De Zanet, Sandro; Rudolph, Tobias; Richa, Rogerio; Tappeiner, Christoph; Sznitman, Raphael (2016). Retinal slit lamp video mosaicking. International Journal of Computer Assisted Radiology and Surgery, 11(6), pp. 1035-1041. Springer 10.1007/s11548-016-1377-4

Zbinden, Sarah; Steiner, Patrick; Kucur, Serife Seda; Wolf, Sebastian; Sznitman, Raphael (2016). Automatic assessment of time-resolved OCT images for selective retina therapy. International Journal of Computer Assisted Radiology and Surgery, 11(6), pp. 863-871. Springer 10.1007/s11548-016-1383-6

Mosinska, A; Sznitman, Raphael; Glowacki, P; Fua, P (2016). Active Learning for Delineation of Curvilinear Structures. In: Computer Vision and Pattern Recognition. CVPR 2016.

2015

Steiner, Patrick; Ebneter, Andreas; Berger, Lieselotte Erika; Zinkernagel, Martin; Povazay, Boris; Meier, Christoph; Kowal, Horst Jens; Framme, Carsten Karl Josef; Brinkmann, Ralf; Wolf, Sebastian; Sznitman, Raphael (2015). Time-Resolved Ultra–High Resolution Optical Coherence Tomography for Real-Time Monitoring of Selective Retina Therapy. Investigative ophthalmology & visual science, 56(11), pp. 6654-6662. Association for Research in Vision and Ophthalmology 10.1167/iovs.15-17151

Dysli, Chantal-Simone; Enzmann, Volker; Sznitman, Raphael; Zinkernagel, Martin (2015). Quantitative Analysis of Mouse Retinal Layers Using Automated Segmentation of Spectral Domain Optical Coherence Tomography Images. Translational vision science & technology, 4(4), p. 9. Association for Research in Vision and Ophthalmology 10.1167/tvst.4.4.9

Steiner, Patrick; Meier, Christoph; Berger, Lieselotte Erika; Ebneter, Andreas; Zinkernagel, Martin; Wolf, Sebastian; Sznitman, Raphael (4 May 2015). Real-time ultra-high optical coherence tomography monitoring of optical tissue effects caused by selective retina therapy. In: ARVO Annual Meeting. ARVO

Steiner, Patrick; Kowal, Horst Jens; Povazay, Boris; Meier, Christoph; Sznitman, Raphael (2015). Automatic estimation of noise parameters in Fourier-domain optical coherence tomography cross sectional images using statistical information. Applied optics, 54(12), pp. 3650-3657. Optical Society of America 10.1364/AO.54.003650

Ciller, Carlos; De Zanet, Sandro; Rüegsegger, Michael; Pica, Alessia; Sznitman, Raphael; Thiran, Jean-Philippe; Maeder, Philippe; Munier, Francis L.; Kowal, Horst Jens; Bach Cuadra, Meritxell (2015). Automatic Segmentation of the Eye in 3D Magnetic Resonance Imaging: A novel Statistical Shape Model for treatment planning of Retinoblastoma. International journal of radiation oncology, biology, physics, 92(4), pp. 794-802. Elsevier 10.1016/j.ijrobp.2015.02.056

Steiner, Patrick; Enzmann, Volker; Wolf, Sebastian; Bossen, Anke; Meier, Christoph; Sznitman, Raphael (February 2015). Assessment of ultra-high resolution optical coherence tomography for monitoring tissue effects caused by laser photocoagulation of ex-vivo porcine retina. In: Photonics West, Optical Interactions with Tissue and Cells XXVI. Proc. SPIE: Vol. 9321 (p. 932112). SPIE 10.1117/12.2079351

Sznitman, Raphael; Serradell, Eduard; Pinheiro, Miguel; Kybic, Jan; Moreno-Noguer, Francesc; Fua, Pascal (2015). Non-Rigid Graph Registration using Active Testing Search (In Press). IEEE transactions on pattern analysis and machine intelligence IEEE Computer Society

Koren, Yelena; Sznitman, Raphael; Arratia, Paulo E.; Carls, Christopher; Krajacic, Predrag; Brown, André E.X.; Sznitman, Josué (2015). Model-independent phenotyping of C. elegans locomotion using Scale-Invariant Feature Transform. PLoS ONE, 10(3), e0122326. Public Library of Science 10.1371/journal.pone.0122326

Rajan, Purnima; Han, Weidong; Sznitman, Raphael; Frazier, Peter; Jedynak, Bruno (2015). Bayesian Multiple Target Localization. Journal of Machine Learning Research, 37, pp. 1945-1953. Microtome Publishing

2014

Greenblum, Ayala; Sznitman, Raphael; Fua, Pascal; Arratia, Paulo E; Oren, Micheal; Podbilewicz, Beni; Sznitman, Josue (2014). Dendritic tree extraction from noisy maximum intensity projection images in C. elegans. Biomedical engineering online, 13(1), p. 74. BioMed Central 10.1186/1475-925X-13-74

Sznitman, Raphael; Becker, Carlos; Fua, Pascal (2014). Fast Part-Based Classification for Instrument Detection in Minimally Invasive Surgery. In: Golland, Polina; Hata, Nobuhiko; Barillot, Christian; Hornegger, Joachim; Howe, Robert (eds.) 17th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI). Lecture Notes in Computer Science: Vol. 8674 (pp. 692-699). Springer 10.1007/978-3-319-10470-6_86

Glowacki, P; Pinheiro, M; Turetken, E; Sznitman, Raphael; Lebrecht, D; Kybic, J; Holtmaat, A; Fua, P (2014). Reconstructing Evolving Tree Structures in Time Lapse Sequences. In: IEEE Conference on Computer Vision and Pattern Recognition (CVPR) (pp. 3035-3042). IEEE 10.1109/CVPR.2014.388

Greenblum, Ayala; Sznitman, Raphael; Fua, Pascal; Arratia, Paulo E.; Sznitman, Josue (2014). Caenorhabditis elegant segmentation using texture-based models for motility phenotyping. IEEE transactions on biomedical engineering, 61(8), pp. 2278-2289. Institute of Electrical and Electronics Engineers IEEE 10.1109/TBME.2014.2298612

2013

Sznitman, Raphael; Richa, Rogerio; Taylor, Russell; Jedynak, Bruno; Hager, Gregory (2013). Unified detection and tracking of instruments during retinal microsurgery. IEEE transactions on pattern analysis and machine intelligence, 35(5), pp. 1263-1273. IEEE Computer Society 10.1109/TPAMI.2012.209

Sznitman, Raphael; Becker, Carlos; Fleuret, Francois; Fua, Pascal (2013). Fast Object Detection with Entropy-Driven Evaluation. In: 2013 IEEE Conference on Computer Vision and Pattern Recognition (CVPR) (pp. 3270-3277). IEEE 10.1109/cvpr.2013.420

Sznitman, Raphael; Lucchi, Aurelien; Cantoni, Marco; Knott, Graham; Fua, Pascal (2013). Flash Scanning Electron Microscopy. In: Mori, Kensaku; Sakuma, Ichiro; Sato, Yoshinobu; Barillot, Christian; Navab, Nassir (eds.) Medical Image Computing and Computer-Assisted Intervention – MICCAI 2013. Lecture Notes in Computer Science: Vol. 8151 (pp. 413-420). Berlin, Heidelberg: Springer Berlin Heidelberg 10.1007/978-3-642-40760-4_52

Pinheiro, Miguel Amável; Sznitman, Raphael; Serradell, Eduard; Kybic, Jan; Moreno-Noguer, Francesc; Fua, Pascal (2013). Active Testing Search for Point Cloud Matching. In: Gee, James C.; Joshi, Sarang; Pohl, Kilian M.; Wells, William M.; Zöllei, Lilla (eds.) Information Processing in Medical Imaging - IPMI 2013. Lecture Notes in Computer Science: Vol. 7917 (pp. 572-583). Berlin, Heidelberg: Springer Berlin Heidelberg 10.1007/978-3-642-38868-2_48

2012

Richa, Rogerio; Balicki, Marcin; Sznitman, Raphael; Meisner, Eric; Taylor, Russell; Hager, Gregory (2012). Vision-based Proximity Detection in Retinal Surgery. IEEE transactions on biomedical engineering, 59(9), pp. 2291-2301. Institute of Electrical and Electronics Engineers IEEE 10.1109/TBME.2012.2202903

Jedynak, Bruno; Frazier, Peter; Sznitman, Raphael (2012). Twenty questions with noise: Bayes optimal policies for entropy loss. Journal of Applied Probability, 49(1), pp. 114-136. Applied Probability Trust

Sznitman, Raphael; Lucchi, Aurelien; Pjescic-Emedji, Natasa; Knott, Graham; Fua, Pascal (2012). Efficient Scanning for EM Based Target Localization. In: Medical Image Computing and Computer-Assisted Intervention – MICCAI 2012. Lecture Notes in Computer Science: Vol. 7512 (pp. 337-344). Berlin, Heidelberg: Springer Berlin Heidelberg 10.1007/978-3-642-33454-2_42

Sznitman, Raphael; Ali, Karim; Richa, Rogério; Taylor, Russell H.; Hager, Gregory D.; Fua, Pascal (2012). Data-Driven Visual Tracking in Retinal Microsurgery. In: Ayache, Nicholas; Delingette, Hervé; Golland, Polina; Mori, Kensaku (eds.) Medical Image Computing and Computer-Assisted Intervention – MICCAI 2012. Lecture Notes in Computer Science: Vol. 7511 (pp. 568-575). Berlin, Heidelberg: Springer Berlin Heidelberg 10.1007/978-3-642-33418-4_70

2011

Richa, Rogério; Balicki, Marcin; Meisner, Eric; Sznitman, Raphael; Taylor, Russell; Hager, Gregory (2011). Visual Tracking of Surgical Tools for Proximity Detection in Retinal Surgery. In: Information Processing in Computer-Assisted Interventions - IPCAI 2011. Lecture Notes in Computer Science: Vol. 6689 (pp. 55-66). Berlin, Heidelberg: Springer Berlin Heidelberg 10.1007/978-3-642-21504-9_6

Sznitman, Raphael; Basu, Anasuya; Richa, Rogerio; Handa, Jim; Gehlbach, Peter; Taylor, Russell H.; Jedynak, Bruno; Hager, Gregory D. (2011). Unified Detection and Tracking in Retinal Microsurgery. In: Medical Image Computing and Computer-Assisted Intervention – MICCAI 2011. Lecture Notes in Computer Science: Vol. 6891 (pp. 1-8). Berlin, Heidelberg: Springer Berlin Heidelberg 10.1007/978-3-642-23623-5_1

2010

Sznitman, Raphael; Jedynak, Bruno (2010). Active Testing for Face Detection and Localization. IEEE transactions on pattern analysis and machine intelligence, 32(10), pp. 1914-1920. IEEE Computer Society

Sznitman, Raphael; Gupta, Manaswi; Hager, Gregory; Arratia, Paulo; Sznitman, Josue (2010). Multi-Environment Model Estimation for Motility Analysis of Caernorhabditis elegans. PLoS ONE, 5(7), e11631. Public Library of Science 10.1371/journal.pone.0011631

Sznitman, Raphael; Billings, Seth; Rother, Diego; Mirota, Daniel; Yang, Yi; Handa, Jim; Gehlbach, Peter; Kang, Jin U.; Hager, Gregory D.; Taylor, Russell (2010). Active Multispectral Illumination and Image Fusion for Retinal Microsurgery. In: Navab, Nassir; Jannin, Pierre (eds.) Information Processing in Computer-Assisted Interventions - IPCAI 2010. Lecture Notes in Computer Science: Vol. 6135 (pp. 12-22). Berlin, Heidelberg: Springer Berlin Heidelberg 10.1007/978-3-642-13711-2_2

Sznitman, J.; Shen, X.; Sznitman, Raphael; Arratia, P. E. (2010). Propulsive force measurements and flow behavior of undulatory swimmers at low Reynolds number. Physics of Fluids, 22(12), p. 121901. AIP Publishing 10.1063/1.3529236

Sznitman, Raphael; Rother, Diego; Handa, Jim; Gehlbach, Peter; Hager, Gregory D.; Taylor, Russell (2010). Adaptive Multispectral Illumination for Retinal Microsurgery. In: Medical Image Computing and Computer-Assisted Intervention – MICCAI 2010. Lecture Notes in Computer Science: Vol. 6363 (pp. 465-472). Berlin, Heidelberg: Springer Berlin Heidelberg 10.1007/978-3-642-15711-0_58

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