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Pasin, Chloé; Consiglio, Camila R; Huisman, Jana S; de Lange, Ann-Marie G; Peckham, Hannah; Vallejo-Yagüe, Enriqueta; Abela, Irene A; Islander, Ulrika; Neuner-Jehle, Nadia; Pujantell, Maria; Roth, Olivia; Schirmer, Melanie; Tepekule, Burcu; Zeeb, Marius; Hachfeld, Anna; Aebi-Popp, Karoline; Kouyos, Roger D; Bonhoeffer, Sebastian (2023). Sex and gender in infection and immunity: addressing the bottlenecks from basic science to public health and clinical applications. Royal Society Open Science, 10(7), p. 221628. The Royal Society Publishing 10.1098/rsos.221628
Bouman, Judith A; Riou, Julien; Bonhoeffer, Sebastian; Regoes, Roland R (2021). Estimating the cumulative incidence of SARS-CoV-2 with imperfect serological tests: Exploiting cutoff-free approaches. PLoS computational biology, 17(2), e1008728. Public Library of Science 10.1371/journal.pcbi.1008728
Ashcroft, Peter; Lehtinen, Sonja; Angst, Daniel C; Low, Nicola; Bonhoeffer, Sebastian (2021). Quantifying the impact of quarantine duration on COVID-19 transmission. eLife, 10, e63704. eLife Sciences Publications 10.7554/eLife.63704
Nienhold, Ronny; Ashcroft, Peter; Zmajkovic, Jakub; Rai, Shivam; Rao, Tata Nageswara; Drexler, Beatrice; Meyer, Sara C.; Lundberg, Pontus; Passweg, Jakob R; Leković, Danijela; Čokić, Vladan; Bonhoeffer, Sebastian; Skoda, Radek C (2020). MPN patients with low mutant JAK2 allele burden show late expansion restricted to erythroid and megakaryocytic lineages. Blood, 136(22), pp. 2591-2595. American Society of Hematology 10.1182/blood.2019002943
Ashcroft, Peter; Huisman, Jana S; Lehtinen, Sonja; Bouman, Judith A; Althaus, Christian L.; Regoes, Roland R; Bonhoeffer, Sebastian (2020). COVID-19 infectivity profile correction [viewpoint]. Swiss medical weekly, 150, w20336. EMH Schweizerischer Ärzteverlag 10.4414/smw.2020.20336
von Wyl, Viktor; Bonhoeffer, Sebastian; Bugnion, Edouard; Puhan, Milo Alan; Salathé, Marcel; Stadler, Theresa; Troncoso, Carmela; Vayena, Effy; Low, Nicola (2020). A research agenda for digital proximity tracing apps. Swiss medical weekly, 150, w20324. EMH Schweizerischer Ärzteverlag 10.4414/smw.2020.20324
Garcia, Victor; Bonhoeffer, Sebastian; Fu, Feng (2020). Cancer-induced immunosuppression can enable effectiveness of immunotherapy through bistability generation: a mathematical and computational examination. Journal of theoretical biology, 492, p. 110185. Elsevier 10.1016/j.jtbi.2020.110185
Bertels, Frederic; Marzel, Alex; Leventhal, Gabriel; Mitov, Venelin; Fellay, Jacques; Günthard, Huldrych F; Böni, Jürg; Yerly, Sabine; Klimkait, Thomas; Aubert, Vincent; Battegay, Manuel; Rauch, Andri; Cavassini, Matthias; Calmy, Alexandra; Bernasconi, Enos; Schmid, Patrick; Scherrer, Alexandra U; Müller, Viktor; Bonhoeffer, Sebastian; Kouyos, Roger; ... (2018). Dissecting HIV Virulence: Heritability of Setpoint Viral Load, CD4+ T Cell Decline and Per-Parasite Pathogenicity. Molecular Biology and Evolution, 35(1), pp. 27-37. Oxford University Press 10.1093/molbev/msx246
Fingerhuth, Stephanie M.; Low, Nicola; Bonhoeffer, Sebastian; Althaus, Christian L. (2017). Detection of antibiotic resistance is essential for gonorrhoea point-of-care testing: a mathematical modelling study. BMC medicine, 15(1), p. 142. BioMed Central 10.1186/s12916-017-0881-x
Fingerhuth, Stephanie M; Bonhoeffer, Sebastian; Low, Nicola; Althaus, Christian L (2016). Antibiotic-Resistant Neisseria gonorrhoeae Spread Faster with More Treatment, Not More Sexual Partners. PLoS pathogens, 12(5), e1005611. Public Library of Science 10.1371/journal.ppat.1005611
Avila, Dorita; Keiser, Olivia; Egger, Matthias; Kouyos, Roger; Böni, Jürg; Yerly, Sabine; Klimkait, Thomas; Vernazza, Pietro L; Aubert, Vincent; Rauch, Andri; Bonhoeffer, Sebastian; Günthard, Huldrych F; Stadler, Tanja; Spycher, Ben D (2014). Social Meets Molecular: Combining Phylogenetic and Latent Class Analyses to Understand HIV-1 Transmission in Switzerland. American journal of epidemiology, 179(12), pp. 1514-1525. Oxford University Press 10.1093/aje/kwu076
von Wyl, Viktor; Kouyos, Roger D; Yerly, Sabine; Böni, Jürg; Shah, Cyril; Bürgisser, Philippe; Klimkait, Thomas; Weber, Rainer; Hirschel, Bernard; Cavassini, Matthias; Staehelin, Cornelia; Battegay, Manuel; Vernazza, Pietro L; Bernasconi, Enos; Ledergerber, Bruno; Bonhoeffer, Sebastian; Günthard, Huldrych F; Swiss HIV Cohort Study, (2011). The role of migration and domestic transmission in the spread of HIV-1 non-B subtypes in Switzerland. Journal of infectious diseases, 204(7), pp. 1095-103. Cary, N.C.: Oxford University Press 10.1093/infdis/jir491
Kouyos, Roger D; von Wyl, Viktor; Yerly, Sabine; Böni, Jürg; Rieder, Philip; Joos, Beda; Taffé, Patrick; Shah, Cyril; Bürgisser, Philippe; Klimkait, Thomas; Weber, Rainer; Hirschel, Bernard; Cavassini, Matthias; Rauch, Andri; Battegay, Manuel; Vernazza, Pietro L; Bernasconi, Enos; Ledergerber, Bruno; Bonhoeffer, Sebastian; Günthard, Huldrych F; ... (2011). Ambiguous nucleotide calls from population-based sequencing of HIV-1 are a marker for viral diversity and the age of infection. Clinical infectious diseases, 52(4), pp. 532-9. Cary, N.C.: Oxford University Press 10.1093/cid/ciq164
Alizon, Samuel; von Wyl, Viktor; Stadler, Tanja; Kouyos, Roger D; Yerly, Sabine; Hirschel, Bernard; Böni, Jürg; Shah, Cyril; Klimkait, Thomas; Furrer, Hansjakob; Rauch, Andri; Vernazza, Pietro L; Bernasconi, Enos; Battegay, Manuel; Bürgisser, Philippe; Telenti, Amalio; Günthard, Huldrych F; Bonhoeffer, Sebastian; Swiss HIV Cohort Study, (2010). Phylogenetic approach reveals that virus genotype largely determines HIV set-point viral load. PLoS pathogens, 6(9), e1001123. San Francisco, Calif.: Public Library of Science 10.1371/journal.ppat.1001123
Kouyos, Roger D; von Wyl, Viktor; Yerly, Sabine; Böni, Jürg; Taffé, Patrick; Shah, Cyril; Bürgisser, Philippe; Klimkait, Thomas; Weber, Rainer; Hirschel, Bernard; Cavassini, Matthias; Furrer, Hansjakob; Battegay, Manuel; Vernazza, Pietro L; Bernasconi, Enos; Rickenbach, Martin; Ledergerber, Bruno; Bonhoeffer, Sebastian; Günthard, Huldrych F (2010). Molecular epidemiology reveals long-term changes in HIV type 1 subtype B transmission in Switzerland. Journal of infectious diseases, 201(10), pp. 1488-97. Cary, N.C.: The University of Chicago Press 10.1086/651951
von Wyl, Viktor; Yerly, Sabine; Bürgisser, Philippe; Klimkait, Thomas; Battegay, Manuel; Bernasconi, Enos; Cavassini, Matthias; Furrer, Hansjakob; Hirschel, Bernard; Vernazza, Pietro L; Francioli, Patrick; Bonhoeffer, Sebastian; Ledergerber, Bruno; Günthard Huldrych, F; Swiss HIV Cohort, Study (2009). Long-term trends of HIV type 1 drug resistance prevalence among antiretroviral treatment-experienced patients in Switzerland. Clinical infectious diseases, 48(7), pp. 979-87. Cary, N.C.: The University of Chicago Press 10.1086/597352
Fingerhuth, Stephanie M; Low, Nicola; Bonhoeffer, Sebastian; Althaus, Christian L (2017). P3.212 Antibiotic resistance detection is essential for gonorrhoea point-of-care testing: a mathematical modelling study. Sexually transmitted infections, 39(Suppl 2), A172.1-A172. BMJ Publishing Group 10.1136/sextrans-2017-053264.447
