Egli, Adrian

Fernandez, Javier Eduardo; Egli, Adrian; Overesch, Gudrun; Perreten, Vincent (2024). Time-calibrated phylogenetic and chromosomal mobilome analyses of Staphylococcus aureus CC398 reveal geographical and host-related evolution. Nature Communications, 15(1), p. 5526. Springer Nature 10.1038/s41467-024-49644-9

Gütlin, Yukino; Albertos Torres, Diana; Gensch, Alexander; Schlotterbeck, Ann-Kathrin; Stöger, Laurent; Heller, Stefanie; Infanti, Laura; Barut, Güliz Tuba; Thiel, Volker; Leuzinger, Karoline; Hirsch, Hans H; Buser, Andreas; Egli, Adrian (2024). Anti-SARS-CoV-2 total immunoglobulin and neutralising antibody responses in healthy blood donors throughout the COVID-19 pandemic: a longitudinal observational study. Swiss medical weekly, 154(3408) SMW supporting association 10.57187/s.3408

Wegner, Fanny; Cabrera-Gil, Blanca; Tanguy, Araud; Beckmann, Christiane; Beerenwinkel, Niko; Bertelli, Claire; Carrara, Matteo; Cerutti, Lorenzo; Chen, Chaoran; Cordey, Samuel; Dumoulin, Alexis; du Plessis, Louis; Friedli, Marc; Gerth, Yannick; Greub, Gilbert; Härri, Adrian; Hirsch, Hans; Howald, Cedric; Huber, Michael; Imhof, Alexander; ... (2024). How much should we sequence? An analysis of the Swiss SARS-CoV-2 surveillance effort. Microbiology spectrum, 12(5), e0362823. American Society for Microbiology 10.1128/spectrum.03628-23

Schreiber, Peter W; Hoessly, Linard D; Boggian, Katia; Neofytos, Dionysios; van Delden, Christian; Egli, Adrian; Dickenmann, Michael; Hirzel, Cédric; Manuel, Oriol; Koller, Michael; Rossi, Simona; Banz, Vanessa; Schmied, Bruno; Guerke, Lorenz; Matter, Maurice; de Rougemont, Olivier; Bonani, Marco; Golshayan, Déla; Schnyder, Aurelia; Sidler, Daniel; ... (2024). Surgical site infections after kidney transplantation are independently associated with graft loss. American journal of transplantation, 24(5), pp. 795-802. Elsevier 10.1016/j.ajt.2023.11.013

Benvenga, Vanni; Cuénod, Aline; Purushothaman, Srinithi; Dasen, Gottfried; Weisser, Maja; Bassetti, Stefano; Roloff, Tim; Siegemund, Martin; Heininger, Ulrich; Bielicki, Julia; Wehrli, Marianne; Friderich, Paul; Frei, Reno; Widmer, Andreas; Herzog, Kathrin; Fankhauser, Hans; Nolte, Oliver; Bodmer, Thomas; Risch, Martin; Dubuis, Olivier; ... (2024). Historic methicillin-resistant Staphylococcus aureus: expanding current knowledge using molecular epidemiological characterization of a Swiss legacy collection. Genome medicine, 16(23) BioMed Central 10.1186/s13073-024-01292-w

Mombelli, Matteo; Neofytos, Dionysios; Huynh-Do, Uyen; Sánchez-Céspedes, Javier; Stampf, Susanne; Golshayan, Dela; Dahdal, Suzan; Stirnimann, Guido; Schnyder, Aurelia; Garzoni, Christian; Venzin, Reto M; Magenta, Lorenzo; Schönenberger, Melanie; Walti, Laura Naëmi; Hirzel, Cédric; Munting, Aline; Dickenmann, Michael; Koller, Michael; Aubert, John-David; Steiger, Jürg; ... (2024). Immunogenicity of High-Dose vs. MF59-adjuvanted vs. Standard Influenza Vaccine in Solid Organ Transplant Recipients: The STOP-FLU trial. Clinical infectious diseases, 78(1), pp. 48-56. Oxford University Press 10.1093/cid/ciad477

Seth-Smith, Helena; Vesenbeckh, Silvan; Egli, Adrian; Ott, Sebastian (2023). SARS-CoV-2 in an immunocompromised host: convalescent plasma therapy and viral evolution elucidated by whole genome sequencing. BMJ case reports, 16(12) BMJ Publishing Group 10.1136/bcr-2023-255255

Zürcher, Kathrin; Abela, Irene A; Stange, Madlen; Dupont, Carole; Mugglin, Catrina; Egli, Adrian; Trkola, Alexandra; Egger, Matthias; Fenner, Lukas (2023). Alpha variant coronavirus outbreak in a nursing home despite high vaccination coverage: molecular, epidemiological and immunological studies. Clinical infectious diseases, 77(4), pp. 537-546. Oxford 10.1093/cid/ciab1005

Capoferri, Gioele; Walti, Carla Simone; Urwyler, Pascal; Ragozzino, Silvio; Passweg, Jakob R; Halter, Jörg; Battegay, Manuel; Baettig, Veronika; Weisser, Maja; Arnold, Brice; Morin, Benedict; Guetlin, Yukino; Torres, Diana Albertos; Barut, Güliz Tuba; Thiel, Volker; Egli, Adrian; Drexler, Beatrice; Khanna, Nina (2023). Dynamics of antibody titers to SARS-CoV-2 and clinical outcomes after sotrovimab pre-exposure prophylaxis early after allogeneic hematopoietic stem cell transplantation. Bone marrow transplantation, 58(5), pp. 597-599. Springer Nature 10.1038/s41409-023-01936-2

Neves, Aitana; Walther, Daniel; Martin-Campos, Trinidad; Barbie, Valerie; Bertelli, Claire; Blanc, Dominique; Bouchet, Gérard; Erard, Frédéric; Greub, Gilbert; Hirsch, Hans H; Huber, Michael; Kaiser, Laurent; Leib, Stephen L; Leuzinger, Karoline; Lazarevic, Vladimir; Mäusezahl, Mirjam; Molina, Jorge; Neher, Richard A; Perreten, Vincent; Ramette, Alban; ... (2023). The Swiss Pathogen Surveillance Platform - towards a nation-wide One Health data exchange platform for bacterial, viral and fungal genomics and associated metadata. Microbial genomics, 9(5) Microbiology Society 10.1099/mgen.0.001001

Vasconcelos, Malte Kohns; Meyer Sauteur, Patrick M; Keitel, Kristina; Santoro, Regina; Egli, Adrian; Coslovsky, Michael; Seiler, Michelle; Lurà, Marco; Köhler, Henrik; Loevy, Natasha; Kahlert, Christian R; Heininger, Ulrich; Van den Anker, Johannes; Bielicki, Julia A (2023). Detection of mostly viral pathogens and high proportion of antibiotic treatment initiation in hospitalised children with community-acquired pneumonia in Switzerland - baseline findings from the first two years of the KIDS-STEP trial. Swiss medical weekly, 153(40040), p. 40040. SMW supporting association 10.57187/smw.2023.40040

Cuénod, Aline; Aerni, Martina; Bagutti, Claudia; Bayraktar, Banu; Boz, Efe Serkan; Carneiro, Cynthia Beisert; Casanova, Carlo; Coste, Alix T; Damborg, Peter; van Dam, Dick; Demirci, Mehmet; Drevinek, Pavel; Dubuis, Olivier; Fernandez, José; Greub, Gilbert; Hrabak, Jaroslav; Yiğitler, Gülen Hürkal; Hurych, Jakub; Jensen, Thøger Gorm; Jost, Géraldine; ... (2023). Quality of MALDI-TOF Mass Spectra in Routine Diagnostics: Results from an International External Quality Assessment including 36 Laboratories from 12 countries using 47 challenging bacterial strains. Clinical microbiology and infection, 29(2), pp. 190-199. Elsevier 10.1016/j.cmi.2022.05.017

Nadeau, Sarah A; Vaughan, Timothy G; Beckmann, Christiane; Topolsky, Ivan; Chen, Chaoran; Hodcroft, Emma; Schär, Tobias; Nissen, Ina; Santacroce, Natascha; Burcklen, Elodie; Ferreira, Pedro; Jablonski, Kim Philipp; Posada-Céspedes, Susana; Capece, Vincenzo; Seidel, Sophie; Santamaria de Souza, Noemi; Martinez-Gomez, Julia M; Cheng, Phil; Bosshard, Philipp P; Levesque, Mitchell P; ... (2023). Swiss public health measures associated with reduced SARS-CoV-2 transmission using genome data. Science translational medicine, 15(680), eabn7979. American Association for the Advancement of Science 10.1126/scitranslmed.abn7979

Bock, Lukas; Aguilar-Bultet, Lisandra; Egli, Adrian; Battegay, Manuel; Kronenberg, Andreas; Vogt, Roland; Kaufmann, Carole; Tschudin-Sutter, Sarah (2022). Air temperature and incidence of extended-spectrum beta-lactamase (ESBL)-producing Enterobacteriaceae. Environmental research, 215(Pt 2), p. 114146. Elsevier 10.1016/j.envres.2022.114146

Fernandez, Javier E; Seth-Smith, Helena M B; Nordmann, Patrice; Egli, Adrian; Endimiani, Andrea; Perreten, Vincent (2022). Intra- and Interspecies Spread of a Novel Conjugative Multidrug Resistance IncC Plasmid Coharboring blaOXA-181 and armA in a Cystic Fibrosis Patient. Microbiology spectrum, 10(5), e0312122. American Society for Microbiology 10.1128/spectrum.03121-22

Callegari, Ilaria; Schneider, Mika; Berloffa, Giuliano; Mühlethaler, Tobias; Holdermann, Sebastian; Galli, Edoardo; Roloff, Tim; Boss, Renate; Infanti, Laura; Khanna, Nina; Egli, Adrian; Buser, Andreas; Zimmer, Gert; Derfuss, Tobias; Sanderson, Nicholas S R (2022). Potent neutralization by monoclonal human IgM against SARS-CoV-2 is impaired by class switch. EMBO reports, 23(7), e53956. EMBO press 10.15252/embr.202153956

Hodcroft, Emma B; Dyrdak, Robert; Andrés, Cristina; Egli, Adrian; Reist, Josiane; García Martínez de Artola, Diego; Alcoba-Flórez, Julia; Niesters, Hubert G M; Antón, Andrés; Poelman, Randy; Reynders, Marijke; Wollants, Elke; Neher, Richard A; Albert, Jan (2022). Evolution, geographic spreading, and demographic distribution of Enterovirus D68. PLoS pathogens, 18(5), e1010515. Public Library of Science 10.1371/journal.ppat.1010515

Linnik, Janina; Syedbasha, Mohammedyaseen; Kaltenbach, Hans-Michael; Vogt, Dominik; Hollenstein, Yvonne; Kaufmann, Lukas; Cantoni, Nathan; Ruosch-Girsberger, Sabine; Müller, Antonia M S; Schanz, Urs; Pabst, Thomas; Stüssi, Georg; Weisser, Maja; Halter, Jörg; Stelling, Jörg; Egli, Adrian (2022). Association of Host Factors With Antibody Response to Seasonal Influenza Vaccination in Allogeneic Hematopoietic Stem Cell Transplant Patients. The journal of infectious diseases, 225(8), pp. 1482-1493. Oxford University Press 10.1093/infdis/jiab391

Balmer, Lisa; Seth-Smith, Helena M B; Egli, Adrian; Casanova, Carlo; Kronenberg, Andreas Oskar; Schrenzel, Jacques; Marschall, Jonas; Sommerstein, Rami (2022). Agrobacterium species bacteraemia, Switzerland, 2008 to 2019: a molecular epidemiological study. Antimicrobial resistance and infection control, 11(1), p. 47. BioMed Central 10.1186/s13756-022-01086-y

Wegner, Fanny; Roloff, Tim; Huber, Michael; Cordey, Samuel; Ramette, Alban; Gerth, Yannick; Bertelli, Claire; Stange, Madlen; Seth-Smith, Helena M B; Mari, Alfredo; Leuzinger, Karoline; Cerutti, Lorenzo; Harshman, Keith; Xenarios, Ioannis; Le Mercier, Philippe; Bittel, Pascal; Neuenschwander, Stefan; Opota, Onya; Fuchs, Jonas; Panning, Marcus; ... (2022). External quality assessment of SARS-CoV-2-sequencing: An ESGMD-SSM pilot trial across 15 European laboratories. Journal of clinical microbiology, 60(1), e0169821. American Society for Microbiology 10.1128/JCM.01698-21

van den Bogaart, Lorena; Lang, Brian M; Neofytos, Dionysios; Egli, Adrian; Walti, Laura N; Boggian, Katia; Garzoni, Christian; Berger, Christoph; Pascual, Manuel; van Delden, Christian; Mueller, Nicolas J; Manuel, Oriol; Mombelli, Matteo (2022). Epidemiology and outcomes of medically attended and microbiologically confirmed bacterial foodborne infections in solid organ transplant recipients. American journal of transplantation, 22(1), pp. 199-209. Wiley-Blackwell 10.1111/ajt.16831

Chen, Chaoran; Nadeau, Sarah Ann; Topolsky, Ivan; Manceau, Marc; Huisman, Jana S; Jablonski, Kim Philipp; Fuhrmann, Lara; Dreifuss, David; Jahn, Katharina; Beckmann, Christiane; Redondo, Maurice; Noppen, Christoph; Risch, Lorenz; Risch, Martin; Wohlwend, Nadia; Kas, Sinem; Bodmer, Thomas; Roloff, Tim; Stange, Madlen; Egli, Adrian; ... (2021). Quantification of the spread of SARS-CoV-2 variant B.1.1.7 in Switzerland. Epidemics, 37, p. 100480. Elsevier 10.1016/j.epidem.2021.100480

Cuénod, Aline; Wüthrich, Daniel; Seth-Smith, Helena M B; Ott, Chantal; Gehringer, Christian; Foucault, Frédéric; Mouchet, Roxanne; Kassim, Ali; Revathi, Gunturu; Vogt, Deborah R; von Felten, Stefanie; Bassetti, Stefano; Tschudin-Sutter, Sarah; Hettich, Timm; Schlotterbeck, Götz; Homberger, Christina; Casanova, Carlo; Moran-Gilad, Jacob; Sagi, Orli; Rodríguez-Sánchez, Belén; ... (2021). Whole-genome sequence-informed MALDI-TOF MS diagnostics reveal importance of Klebsiella oxytoca group in invasive infections: a retrospective clinical study. Genome medicine, 13(1), p. 150. BioMed Central 10.1186/s13073-021-00960-5

von Hammerstein, Alix L; Aebi, Christoph; Barbey, Florence; Berger, Christoph; Buettcher, Michael; Casaulta, Carmen; Egli, Adrian; Gebauer, Mathias; Guerra, Beatrice; Kahlert, Christian; Kellner, Eva; Kottanattu, Lisa; Opota, Onya; Mann, Christian; Meyer Sauteur, Patrick; Plebani, Margherita; Ritz, Nicole; Testi, Chiara; von Niederhäusern, Valentin; Wagner, Noemie; ... (2021). Interseasonal RSV infections in Switzerland - rapid establishment of a clinician-led national reporting system (RSV EpiCH). Swiss medical weekly, 151(w30057), w30057. EMH Media 10.4414/SMW.2021.w30057

Seth-Smith, Helena M B; Biggel, Michael; Roloff, Tim; Hinic, Vladimira; Bodmer, Thomas; Risch, Martin; Casanova, Carlo; Widmer, Andreas; Sommerstein, Rami; Marschall, Jonas; Tschudin-Sutter, Sarah; Egli, Adrian (2021). Transition From PCR-Ribotyping to Whole Genome Sequencing Based Typing of Clostridioides difficile. Frontiers in cellular and infection microbiology, 11, p. 681518. Frontiers 10.3389/fcimb.2021.681518

Mari, Alfredo; Roloff, Tim; Stange, Madlen; Søgaard, Kirstine K; Asllanaj, Erblin; Tauriello, Gerardo; Alexander, Leila Tamara; Schweitzer, Michael; Leuzinger, Karoline; Gensch, Alexander; Martinez, Aurélien E; Bielicki, Julia; Pargger, Hans; Siegemund, Martin; Nickel, Christian H; Bingisser, Roland; Osthoff, Michael; Bassetti, Stefano; Sendi, Parham; Battegay, Manuel; ... (2021). Global Genomic Analysis of SARS-CoV-2 RNA Dependent RNA Polymerase Evolution and Antiviral Drug Resistance. Microorganisms, 9(5) MDPI 10.3390/microorganisms9051094

Mombelli, Matteo; Lang, Brian M; Neofytos, Dionysios; Aubert, John-David; Benden, Christian; Berger, Christoph; Boggian, Katia; Egli, Adrian; Soccal, Paola M; Kaiser, Laurent; Hirzel, Cédric; Pascual, Manuel; Koller, Michael; Mueller, Nicolas J; van Delden, Christian; Hirsch, Hans H; Manuel, Oriol (2021). Burden, epidemiology, and outcomes of microbiologically confirmed respiratory viral infections in solid organ transplant recipients: a nationwide, multi-season prospective cohort study. American journal of transplantation, 21(5), pp. 1789-1800. Wiley-Blackwell 10.1111/ajt.16383

Goncalves Cabecinhas, Ana Rita; Roloff, Tim; Stange, Madlen; Bertelli, Claire; Huber, Michael; Ramette, Alban; Chen, Chaoran; Nadeau, Sarah; Gerth, Yannick; Yerly, Sabine; Opota, Onya; Pillonel, Trestan; Schuster, Tobias; Metzger, Cesar M J A; Sieber, Jonas; Bel, Michael; Wohlwend, Nadia; Baumann, Christian; Koch, Michel C.; Bittel, Pascal; ... (2021). SARS-CoV-2 N501Y Introductions and Transmissions in Switzerland from Beginning of October 2020 to February 2021-Implementation of Swiss-Wide Diagnostic Screening and Whole Genome Sequencing. Microorganisms, 9(4), p. 677. MDPI 10.3390/microorganisms9040677

Dylus, David; Pillonel, Trestan; Opota, Onya; Wüthrich, Daniel; Seth-Smith, Helena M. B.; Egli, Adrian; Leo, Stefano; Lazarevic, Vladimir; Schrenzel, Jacques; Laurent, Sacha; Bertelli, Claire; Blanc, Dominique S.; Neuenschwander, Stefan; Ramette, Alban; Falquet, Laurent; Imkamp, Frank; Keller, Peter M.; Kahles, Andre; Oberhaensli, Simone; Barbié, Valérie; ... (2020). NGS-Based S. aureus Typing and Outbreak Analysis in Clinical Microbiology Laboratories: Lessons Learned From a Swiss-Wide Proficiency Test. Frontiers in Microbiology, 11, p. 591093. Frontiers 10.3389/fmicb.2020.591093

Egli, Adrian; Kronenberg, Andreas (2020). Vermeidung einer Pandemie mit multiresistenten Mikroorganismen: Lehren aus COVID-19? Swiss Medical Forum, 20(4748), pp. 690-694. EMH Swiss Medical Publishers https://doi.org/10.4414/smf.2020.08635

Kuenzli, Andrea B.; Burri, Silvie; Casanova, Carlo; Sommerstein, Rami; Buetti, Niccolo; Seth-Smith, Helena Mb; Bodmer, Thomas; Egli, Adrian; Marschall, Jonas (2020). Successful Management of a Clostridioides difficile Ribotype 027 Outbreak with a Lean Intervention Bundle. The journal of hospital infection, 106(2), pp. 240-245. Elsevier 10.1016/j.jhin.2020.07.034

Balmer, Maria L; Ma, Eric H; Thompson, Andrew J; Epple, Raja; Unterstab, Gunhild; Lötscher, Jonas; Dehio, Philippe; Schürch, Christian M; Warncke, Jan D; Perrin, Gaëlle; Woischnig, Anne-Kathrin; Grählert, Jasmin; Löliger, Jordan; Assmann, Nadine; Bantug, Glenn R; Schären, Olivier P; Khanna, Nina; Egli, Adrian; Bubendorf, Lukas; Rentsch, Katharina; ... (2020). Memory CD8+ T Cells Balance Pro- and Anti-inflammatory Activity by Reprogramming Cellular Acetate Handling at Sites of Infection. Cell metabolism, 32(3), 457-467.e5. Elsevier 10.1016/j.cmet.2020.07.004

Moser, Sarah; Seth-Smith, Helena; Egli, Adrian; Kittl, Sonja; Overesch, Gudrun (2020). Campylobacter jejuni from Canine and Bovine Cases of Campylobacteriosis Express High antimicrobial Resistance Rates against (Fluoro)quinolones and Tetracyclines. Pathogens, 9(9) MDPI AG 10.3390/pathogens9090691

Marzolini, Catia; Stader, Felix; Stoeckle, Marcel; Franzeck, Fabian; Egli, Adrian; Bassetti, Stefano; Hollinger, Alexa; Osthoff, Michael; Weisser, Maja; Gebhard, Caroline E; Baettig, Veronika; Geenen, Julia; Khanna, Nina; Tschudin-Sutter, Sarah; Mueller, Daniel; Hirsch, Hans H; Battegay, Manuel; Sendi, Parham (2020). Effect of Systemic Inflammatory Response to SARS-CoV-2 on Lopinavir and Hydroxychloroquine Plasma Concentrations. Antimicrobial agents and chemotherapy, 64(9) American Society for Microbiology 10.1128/AAC.01177-20

Egli, Adrian; Battegay, Manuel; Büchler, Andrea C; Bühlmann, Peter; Calandra, Thierry; Eckert, Philippe; Furrer, Hansjakob; Greub, Gilbert; Jakob, Stephan M.; Kaiser, Laurent; Leib, Stephen L.; Marsch, Stephan; Meinshausen, Nicolai; Pagani, Jean-Luc; Pugin, Jerome; Rätsch, Gunnar; Schrenzel, Jacques; Schüpbach, Reto; Siegemund, Martin; Zamboni, Nicola; ... (2020). SPHN/PHRT: Forming a Swiss-Wide Infrastructure for Data-Driven Sepsis Research. Studies in health technology and informatics, 270, pp. 1163-1167. IOS Press 10.3233/SHTI200346

Egli, Adrian; Koch, Daniel; Danuser, Jürg; Hendriksen, Rene S; Driesen, Susanne; Schmid, Diana Coman; Neher, Richard; Mäusezahl, Mirjam; Seth-Smith, Helena Mb; Bloemberg, Guido; Tschudin-Sutter, Sarah; Endimiani, Andrea; Perreten, Vincent; Greub, Gilbert; Schrenzel, Jacques; Stephan, Roger (2020). Symposium report: One Health meets sequencing. Microbes and infection, 22(1), pp. 1-7. Elsevier Masson SAS 10.1016/j.micinf.2019.07.004

Seth-Smith, Helena M B; Casanova, Carlo; Sommerstein, Rami; Meinel, Dominik M; Abdelbary, Mohamed M H; Blanc, Dominique S; Droz, Sara; Führer, Urs; Lienhard, Reto; Lang, Claudia; Dubuis, Olivier; Schlegel, Matthias; Widmer, Andreas; Keller, Peter Markus; Marschall, Jonas; Egli, Adrian (2019). Phenotypic and Genomic Analyses of Burkholderia stabilis Clinical Contamination, Switzerland. Emerging infectious diseases, 25(6), pp. 1084-1092. U.S. National Center for Infectious Diseases 10.3201/eid2506.172119

Casanova, Carlo; Lo Priore, Elia; Egli, Adrian; Seth-Smith, Helena M B; Räber, Lorenz; Ott, Daniel; Pflüger, Valentin; Droz, Sara Christine; Marschall, Jonas; Sommerstein, Rami (2019). Agrobacterium spp. nosocomial outbreak assessment using rapid MALDI-TOF MS based typing, confirmed by whole genome sequencing. Antimicrobial resistance and infection control, 8, p. 171. BioMed Central 10.1186/s13756-019-0619-y

Seth-Smith, Helena M B; Imkamp, Frank; Tagini, Florian; Cuénod, Aline; Hömke, Rico; Jahn, Kathleen; Tschacher, Anne; Grendelmeier, Peter; Bättig, Veronika; Erb, Stefan; Reinhard, Miriam; Rütimann, Gottfried; Borrell, Sonia; Gagneux, Sebastien; Casanova, Carlo; Droz, Sara; Osthoff, Michael; Tamm, Michael; Nübel, Ulrich; Greub, Gilbert; ... (2019). Discovery and Characterization of Mycobacterium basiliense sp. nov., a Nontuberculous Mycobacterium Isolated From Human Lungs. Frontiers in Microbiology, 9(3184), p. 3184. Frontiers 10.3389/fmicb.2018.03184

Egli, Adrian; Blanc, Dominique S; Greub, Gilbert; Keller, Peter Michael; Lazarevic, Vladimir; Lebrand, Aitana; Leib, Stephen; Neher, Richard A; Perreten, Vincent; Ramette, Alban; Schrenzel, Jacques; Stephan, Roger; Wagner, Karolin; Wuethrich, Daniel; Xenarios, Ioannis (2018). Improving the quality and workflow of bacterial genome sequencing and analysis: paving the way for a Switzerland-wide molecular epidemiological surveillance platform. Swiss medical weekly, 148(w14693), w14693. EMH Media 10.4414/smw.2018.14693

Stanczak, Michal A; Siddiqui, Shoib S; Trefny, Marcel P; Thommen, Daniela S; Frias Boligan, Kayluz; von Gunten, Stephan; Tzankov, Alexandar; Tietze, Lothar; Lardinois, Didier; Heinzelmann-Schwarz, Viola; von Bergwelt-Baildon, Michael S; Zhang, Wu; Lenz, Heinz-Josef; Han, Younghan; Amos, Christopher I; Syedbasha, Mohammedyaseen; Egli, Adrian; Stenner, Frank; Speiser, Daniel E; Varki, Ajit; ... (2018). Self-associated molecular patterns mediate cancer immune evasion by engaging Siglecs on T cells. Journal of clinical investigation, 128(11), pp. 4912-4923. American Society for Clinical Investigation 10.1172/JCI120612

Egli, Adrian; Greub, Gilbert; Suter, Franziska Marta; Schrenzel, Jacques (2018). Moderne Verfahren zur Bestimmung von Antibiotikaresistenzen. Swiss Medical Forum, 18(46), pp. 950-956. EMH Swiss Medical Publishers 10.4414/smf.2018.03403

Yu, Kang; Davidson, Chelsea L; Wójtowicz, Agnieszka; Lisboa, Luiz; Wang, Ting; Airo, Adriana M; Villard, Jean; Buratto, Jeremie; Sandalova, Tatyana; Achour, Adnane; Humar, Atul; Boggian, Katia; Cusini, Alexia; van Delden, Christian; Egli, Adrian; Manuel, Oriol; Mueller, Nicolas; Bochud, Pierre-Yves; Burshtyn, Deborah N (2018). LILRB1 polymorphisms influence posttransplant HCMV susceptibility and ligand interactions. Journal of clinical investigation, 128(4), pp. 1523-1537. American Society for Clinical Investigation 10.1172/JCI96174

Kohler, Philipp; Fulchini, Rosamaria; Albrich, Werner C.; Egli, Adrian; Balmelli, Carlo; Harbarth, Stephan; Héquet, Delphine; Kahlert, Christian R.; Kuster, Stefan P.; Petignat, Christiane; Schlegel, Matthias; Kronenberg, Andreas (2018). Antibiotic resistance in Swiss nursing homes: analysis of National Surveillance Data over an 11-year period between 2007 and 2017. Antimicrobial Resistance and Infection Control, 7(1), p. 88. BioMed Central 10.1186/s13756-018-0378-1

Wassilew, Nasstasja; Seth-Smith, Helena MB; Rolli, Eveline; Fietze, Yvonne; Casanova, Carlo; Führer, Urs; Egli, Adrian; Marschall, Jonas; Buetti, Niccolò Ivo Marco-Aurelio (2018). Outbreak of vancomycin-resistant Enterococcus faecium clone ST796, Switzerland, December 2017 to April 2018. Eurosurveillance, 23(29) European Centre for Disease Prevention and Control 10.2807/1560-7917.es.2018.23.29.1800351

Sommerstein, Rami; Führer, Urs; Lo Priore, Elia Francesco; Casanova, Carlo; Meinel, Dominik M; Seth-Smith, Helena Mb; Kronenberg, Andreas Oskar; Koch, Daniel; Senn, Laurence; Widmer, Andreas F; Egli, Adrian; Marschall, Jonas (2017). Burkholderia stabilis outbreak associated with contaminated commercially-available washing gloves, Switzerland, May 2015 to August 2016. Eurosurveillance, 22(49) European Centre for Disease Prevention and Control 10.2807/1560-7917.ES.2017.22.49.17-00213

Berger, Christoph; Bochud, Pierre-Yves; Boggian, Katja; Cusini, Alexia; Egli, Adrian; Garzoni, Christian; Hirsch, Hans H; Hoffmann, Matthias; Khanna, Nina; Manuel, Oriol; Meylan, Pascal; Nadal, David; van Delden, Christian; Weisser, Maja; Mueller, Nicolas J (2015). The swiss transplant cohort study: lessons from the first 6 years. Current infectious disease reports, 17(6), p. 486. Current Science 10.1007/s11908-015-0486-5

Osthoff, Michael; Egli, Adrian; Schürch, Nadia; Leib, Stephen; Mihatsch, Felix; Frei, Reno (2015). Ein nicht alltägliches türkisches Souvenir. Schweizerisches Medizin-Forum SMF / Swiss medical forum / Forum médical suisse FMS, 15(25), pp. 611-613. EMH Editores Medicorum Helveticorum

Manuel, Oriol; Wójtowicz, Agnieszka; Bibert, Stéphanie; Mueller, Nicolas J; van Delden, Christian; Hirsch, Hans H; Steiger, Juerg; Stern, Martin; Egli, Adrian; Garzoni, Christian; Binet, Isabelle; Weisser, Maja; Berger, Christoph; Cusini, Alexia; Meylan, Pascal; Pascual, Manuel; Bochud, Pierre-Yves; Swiss Transplant, Cohort Study; Huynh-Do, Uyen (2014). Influence of IFNL3/4 polymorphisms on the incidence of cytomegalovirus infection after solid-organ transplantation. Journal of infectious diseases, 211(6), pp. 906-914. Oxford University Press 10.1093/infdis/jiu557

Egli, Adrian; Schäfer, Juliane; Osthoff, Michael; Thiel, Steffen; Mikkelsen, Christina; Rauch, Andri; Hirsch, Hans H; Bucher, Heiner C; Young, James; Jensenius, Jens C; Battegay, Manuel; Trendelenburg, Marten; Swiss HIV Cohort Study, (2012). Low levels of mannan-binding lectin or ficolins are not associated with an increased risk of cytomegalovirus disease in HIV-infected patients. PLoS ONE, 8(1), e51983. Lawrence, Kans.: Public Library of Science 10.1371/journal.pone.0051983