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Subissi, Lorenzo; Otieno, James Richard; Worp, Nathalie; Attar Cohen, Homa; Oude Munnink, Bas B; Abu-Raddad, Laith J; Alm, Erik; Barakat, Amal; Barclay, Wendy S; Bhiman, Jinal N; Caly, Leon; Chand, Meera; Chen, Mark; Cullinane, Ann; de Oliveira, Tulio; Drosten, Christian; Druce, Julian; Effler, Paul; El Masry, Ihab; Faye, Adama; ... (2024). An updated framework for SARS-CoV-2 variants reflects the unpredictability of viral evolution. Nature medicine, 30(9), pp. 2400-2403. Springer Nature 10.1038/s41591-024-02949-0
Simoes, Margarida Pires; Hodcroft, Emma B; Simmonds, Peter; Albert, Jan; Alidjinou, Enagon K; Ambert-Balay, Katia; Andrés, Cristina; Antón, Andrés; Auvray, Christelle; Bailly, Jean-Luc; Baldanti, Fausto; Bastings, Capser; Beard, Stuart; Pereira, Carla Berengua; Berginc, Natasa; Bloemen, Mandy; Blomqvist, Soile; Bosma, Froukje; Böttcher, Sindy; Bubba, Laura; ... (2024). Epidemiological and clinical insights into the enterovirus D68 upsurge in Europe 2021/22 and the emergence of novel B3-derived lineages, ENPEN multicentre study. (In Press). Journal of infectious diseases Oxford University Press 10.1093/infdis/jiae154
Reichmuth, Martina L; Hodcroft, Emma B; Althaus, Christian L (2023). Importation of Alpha and Delta variants during the SARS-CoV-2 epidemic in Switzerland: Phylogenetic analysis and intervention scenarios. PLoS pathogens, 19(8), e1011553. Public Library of Science 10.1371/journal.ppat.1011553
Humbert, Marion; Olofsson, Anna; Wullimann, David; Niessl, Julia; Hodcroft, Emma B; Cai, Curtis; Gao, Yu; Sohlberg, Ebba; Dyrdak, Robert; Mikaeloff, Flora; Neogi, Ujjwal; Albert, Jan; Malmberg, Karl-Johan; Lund-Johansen, Fridtjof; Aleman, Soo; Björkhem-Bergman, Linda; Jenmalm, Maria C; Ljunggren, Hans-Gustaf; Buggert, Marcus and Karlsson, Annika C (2023). Functional SARS-CoV-2 cross-reactive CD4+ T cells established in early childhood decline with age. Proceedings of the National Academy of Sciences of the United States of America - PNAS, 120(12), e2220320120. National Academy of Sciences NAS 10.1073/pnas.2220320120
Reichmuth, Martina L; Hodcroft, Emma B; Riou, Julien; Neher, Richard A; Hens, Niel; Althaus, Christian L (2022). Impact of cross-border-associated cases on the SARS-CoV-2 epidemic in Switzerland during summer 2020 and 2021. Epidemics, 41, p. 100654. Elsevier 10.1016/j.epidem.2022.100654
Hodcroft, Emma B; Dyrdak, Robert; Andrés, Cristina; Egli, Adrian; Reist, Josiane; García Martínez de Artola, Diego; Alcoba-Flórez, Julia; Niesters, Hubert G M; Antón, Andrés; Poelman, Randy; Reynders, Marijke; Wollants, Elke; Neher, Richard A; Albert, Jan (2022). Evolution, geographic spreading, and demographic distribution of Enterovirus D68. PLoS pathogens, 18(5), e1010515. Public Library of Science 10.1371/journal.ppat.1010515
Telenti, Amalio; Hodcroft, Emma B; Robertson, David L (2022). The Evolution and Biology of SARS-CoV-2 Variants. Cold Spring Harbor perspectives in medicine, 12(5), a041390. Cold Spring Harbor Laboratory Press 10.1101/cshperspect.a041390
Kucharski, Adam J; Hodcroft, Emma B; Kraemer, Moritz U G (2021). Sharing, synthesis and sustainability of data analysis for epidemic preparedness in Europe. The Lancet regional health. Europe, 9, p. 100215. Elsevier 10.1016/j.lanepe.2021.100215
Hodcroft, Emma B; Zuber, Moira; Nadeau, Sarah; Vaughan, Timothy G; Crawford, Katharine H D; Althaus, Christian L; Reichmuth, Martina L; Bowen, John E; Walls, Alexandra C; Corti, Davide; Bloom, Jesse D; Veesler, David; Mateo, David; Hernando, Alberto; Comas, Iñaki; Candelas, Fernando González; Stadler, Tanja; Neher, Richard A (2021). Spread of a SARS-CoV-2 variant through Europe in the summer of 2020. Nature, 595(7869), pp. 707-712. Springer Nature 10.1038/s41586-021-03677-y
