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Hashemi Gheinani, Ali; Kim, Jina; You, Sungyong; Adam, Rosalyn M (2024). Bioinformatics in urology - molecular characterization of pathophysiology and response to treatment. Nature Reviews. Urology, 21(4), pp. 214-242. Nature Publishing Group 10.1038/s41585-023-00805-3
Akshay, Akshay; Besic, Mustafa; Kuhn, Annette; Burkhard, Fiona C; Bigger-Allen, Alex; Adam, Rosalyn M; Monastyrskaya, Katia; Hashemi Gheinani, Ali (2024). Machine Learning-Based Classification of Transcriptome Signatures of Non-Ulcerative Bladder Pain Syndrome. International journal of molecular sciences, 25(3) MDPI 10.3390/ijms25031568
Akshay, Akshay; Katoch, Mitali; Shekarchizadeh, Navid; Abedi, Masoud; Sharma, Ankush; Burkhard, Fiona C; Adam, Rosalyn M; Monastyrskaya, Katia; Hashemi Gheinani, Ali (2024). Machine Learning Made Easy (MLme): a comprehensive toolkit for machine learning-driven data analysis. GigaScience, 13, pp. 1-9. Oxford University Press 10.1093/gigascience/giad111
Akshay, Akshay; Katoch, Mitali; Abedi, Masoud; Shekarchizadeh, Navid; Besic, Mustafa; Burkhard, Fiona C; Bigger-Allen, Alex; Adam, Rosalyn M; Monastyrskaya, Katia; Hashemi Gheinani, Ali (2022). SpheroScan: a user-friendly deep learning tool for spheroid image analysis. GigaScience, 12 Oxford University Press 10.1093/gigascience/giad082
Akshay, Akshay; Abedi, Masoud; Shekarchizadeh, Navid; Burkhard, Fiona C; Katoch, Mitali; Bigger-Allen, Alex; Adam, Rosalyn M; Monastyrskaya, Katia; Hashemi Gheinani, Ali (2022). MLcps: machine learning cumulative performance score for classification problems. GigaScience, 12 Oxford University Press 10.1093/gigascience/giad108
Hashemi Gheinani, Ali; Sack, Bryan S; Bigger-Allen, Alex; Thaker, Hatim; Atta, Hussein; Lambrinos, George; Costa, Kyle; Doyle, Claire; Gharaee-Kermani, Mehrnaz; Patalano, Susan; Piper, Mary; Cotellessa, Justin F; Vitko, Dijana; Li, Haiying; Prabhakaran, Manubhai Kadayil; Cristofaro, Vivian; Froehlich, John; Lee, Richard S; Yang, Wei; Sullivan, Maryrose P; ... (10 December 2023). Integrated omics analysis unveils a DNA damage response to neurogenic injury. (bioRxiv). Cold Spring Harbor Laboratory 10.1101/2023.12.10.571015
