Armstrong, Ellie E.; Khan, Anubhab; Taylor, Ryan W.; Gouy, Alexandre; Greenbaum, Gili; Thiéry, Alexandre; Kang, Jonathan T.; Redondo, Sergio A.; Prost, Stefan; Barsh, Gregory; Kaelin, Christopher; Phalke, Sameer; Chugani, Anup; Gilbert, Martin; Miquelle, Dale; Zachariah, Arun; Borthakur, Udayan; Reddy, Anuradha; Louis, Edward; Ryder, Oliver A.; ... (2021). Recent Evolutionary History of Tigers Highlights Contrasting Roles of Genetic Drift and Selection. Molecular Biology and Evolution, 38(6), pp. 2366-2379. Oxford University Press 10.1093/molbev/msab032
|
Text
msab032.pdf - Published Version Available under License Creative Commons: Attribution (CC-BY). Download (955kB) | Preview |
Species conservation can be improved by knowledge of evolutionary and genetic history. Tigers are among the most charismatic of endangered species and garner significant conservation attention. However, their evolutionary history and genomic variation remain poorly known, especially for Indian tigers. With 70% of the world’s wild tigers living in India, such knowledge is critical. We re-sequenced 65 individual tiger genomes representing most extant subspecies with a specific focus on tigers from India. As suggested by earlier studies, we found strong genetic differentiation between the putative tiger subspecies. Despite high total genomic diversity in India, individual tigers host longer runs of homozygosity, potentially suggesting recent inbreeding or founding events, possibly due to small and fragmented protected areas. We suggest the impacts of ongoing connectivity loss on inbreeding and persistence of Indian tigers be closely monitored. Surprisingly, demographic models suggest recent divergence (within the last 20,000 years) between subspecies and strong population bottlenecks. Amur tiger genomes revealed the strongest signals of selection related to metabolic adaptation to cold, whereas Sumatran tigers show evidence of weak selection for genes involved in body size regulation. We recommend detailed investigation of local adaptation in Amur and Sumatran tigers prior to initiating genetic rescue.
Key words: conservation genomics, carnivores, population decline.
Item Type: |
Journal Article (Original Article) |
|---|---|
Division/Institute: |
08 Faculty of Science > Department of Biology > Institute of Ecology and Evolution (IEE) 08 Faculty of Science > Department of Biology > Institute of Ecology and Evolution (IEE) > Population Genetics |
UniBE Contributor: |
Gouy, Alexandre Pierre, Thiéry, Alexandre Benoit Xavier, Excoffier, Laurent |
Subjects: |
500 Science > 570 Life sciences; biology |
ISSN: |
0737-4038 |
Publisher: |
Oxford University Press |
Language: |
English |
Submitter: |
Susanne Holenstein |
Date Deposited: |
12 Nov 2021 15:22 |
Last Modified: |
02 Mar 2023 23:35 |
Publisher DOI: |
10.1093/molbev/msab032 |
PubMed ID: |
33592092 |
BORIS DOI: |
10.48350/160426 |
URI: |
https://boris.unibe.ch/id/eprint/160426 |
Actions (login required)
 |
Edit item |