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Tomasini, Matteo; Peischl, Stephan (2022). The role of spatial structure in multi-deme models of evolutionary rescue. (In Press). Journal of evolutionary biology Wiley 10.1111/jeb.14018

Grummer, Jared A; Booker, Tom R; Matthey-Doret, Remi; Nietlisbach, Pirmin; Thomaz, Andréa T; Whitlock, Michael C (2022). The immediate costs and long-term benefits of assisted gene flow in large populations. (In Press). Conservation biology, e13911. Wiley 10.1111/cobi.13911

Moinet, Antoine; Schlichta, Flavia; Peischl, Stephan; Excoffier, Laurent (2022). Strong neutral sweeps occurring during a population contraction. Genetics, 220(4) Oxford University Press 10.1093/genetics/iyac021

Marchi, Nina; Winkelbach, Laura; Schulz, Ilektra; Brami, Maxime; Hofmanová, Zuzana; Blöcher, Jens; Reyna-Blanco, Carlos S.; Diekmann, Yoan; Thiéry, Alexandre; Kapopoulou, Adamandia; Link, Vivian; Piuz, Valérie; Kreutzer, Susanne; Figarska, Sylwia M.; Ganiatsou, Elissavet; Pukaj, Albert; Struck, Travis J.; Gutenkunst, Ryan N.; Karul, Necmi; Gerritsen, Fokke; ... (2022). The genomic origins of the world’s first farmers. Cell, 185(11), 1842-1859.e18. Cell Press 10.1016/j.cell.2022.04.008


Yilmaz, Bahtiyar; Mooser, Catherine; Keller, Irene; Li, Hai; Zimmermann, Jakob; Bosshard, Lars; Fuhrer, Tobias; Gomez de Agüero, Mercedes; Fernandez Trigo, Nerea; Tschanz-Lischer, Heidi; Limenitakis, Julien P.; Hardt, Wolf-Dietrich; McCoy, Kathleen; Stecher, Bärbel; Excoffier, Laurent; Sauer, Uwe; Ganal-Vonarburg, Stephanie C.; Macpherson, Andrew J. (2021). Long-term evolution and short-term adaptation of microbiota strains and sub-strains in mice. Cell host & microbe, 29(4), 650-663.e9. Cell Press 10.1016/j.chom.2021.02.001

Marques, David A.; Lucek, Kay; Sousa, Vitor C.; Excoffier, Laurent; Seehausen, Ole (2021). Reply to "Re-evaluating the evidence for facilitation of stickleback speciation by admixture in the Lake Constance basin". Nature Communications, 12(1), p. 2807. Springer Nature 10.1038/s41467-021-23096-x

Excoffier, Laurent; Marchi, Nina; Marques, David Alexander; Matthey-Doret, Remi; Gouy, Alexandre; Sousa, Vitor C. (2021). fastsimcoal2 : demographic inference under complex evolutionary scenarios. Bioinformatics, 37(24), pp. 4882-4885. Oxford University Press 10.1093/bioinformatics/btab468


Mc Gee, Matthew D.; Borstein, Samuel R.; Meier, Joana I.; Marques, David A.; Mwaiko, Salome; Taabu, Anthony; Kishe, Mary A.; O’Meara, Brian; Bruggmann, Rémy; Excoffier, Laurent; Seehausen, Ole (2020). The ecological and genomic basis of explosive adaptive radiation. Nature, 586(7827), pp. 75-79. Springer Nature 10.1038/s41586-020-2652-7


Marques, David A.; Lucek, Kay; Sousa, Vitor; Excoffier, Laurent; Seehausen, Ole (2019). Admixture between old lineages facilitated contemporary ecological speciation in Lake Constance stickleback. Nature communications, 10(1) Nature Publishing Group 10.1038/s41467-019-12182-w


Meier, Joana; Marques, David Alexander; Wagner, Catherine Elise; Excoffier, Laurent; Seehausen, Ole (2018). Genomics of Parallel Ecological Speciation in Lake Victoria Cichlids. Molecular Biology and Evolution, 35(6), pp. 1489-1506. Oxford University Press 10.1093/molbev/msy051


Meier, Joana; Marques, David Alexander; Mwaiko, Salome; Wagner, Catherine; Excoffier, Laurent; Seehausen, Ole (2017). Ancient hybridization fuels rapid cichlid fish adaptive radiations. Nature communications, 8(14363), p. 14363. Nature Publishing Group 10.1038/ncomms14363

Gouy, Alexandre; Daub, Joséphine T.; Excoffier, Laurent (2017). Detecting gene subnetworks under selection in biological pathways. Nucleic acids research, 45(16), e149. Information Retrieval Ltd. 10.1093/nar/gkx626

Peischl, Stephan; Excoffier, Laurent (2017). EXPANSION LOAD. In: Invasion Genetics: the Bakker and Stebbins legacy (pp. 218-231). Wiley 10.1002/9781119072799.ch13

Resano Mayor, Jaime; Fernández-Martín, Àngel; Hernández-Gómez, Sergio; Toranzo, Ignasi; España, Antonio; Gil, Juan Antonio; de Gabriel, Miguel; Roa-Álvarez, Isabel; Strinella, Eliseo; Hobson, Keith A.; Heckel, Gerald; Arlettaz, Raphaël (2017). Integrating genetic and stable isotope analyses to infer the population structure of the White-winged Snowfinch Montifringilla nivalis in Western Europe. Journal of ornithology, 158(2), pp. 395-405. Springer 10.1007/s10336-016-1413-8


Alves, Isabel; Arenas Busto, Miguel; Currat, Mathias; Sramkova Hanulova, Anna; Martins Conde e Sousa, Vitor; Ray, Nicolas; Excoffier, Laurent (2016). Long distance dispersal shaped patterns of human genetic diversity in Eurasia. Molecular Biology and Evolution, 33(4), pp. 946-958. Oxford University Press 10.1093/molbev/msv332

Marques, David Alexander; Lucek, Kay Jurka Olaf; Meier, Joana; Mwaiko, Salome; Wagner, Catherine; Excoffier, Laurent; Seehausen, Ole (2016). Genomics of Rapid Incipient Speciation in Sympatric Threespine Stickleback. PLoS genetics, 12(2), e1005887. Public Library of Science 10.1371/journal.pgen.1005887

Henn, Brenna M.; Botigué, Laura R.; Peischl, Stephan; Duperret, Isabelle; Lipatov, Mikhail; Maples, Brian K.; Martin, Alicia R.; Musharoff, Shaila; Cann, Howard; Snyder, Michael P.; Excoffier, Laurent; Kidd, Jeffrey M.; Bustamante, Carlos D. (2016). Distance from Sub-Saharan Africa Predicts Mutational Load in Diverse Human Genomes. Proceedings of the National Academy of Sciences of the United States of America - PNAS, 113(4), E440-E449. National Academy of Sciences NAS 10.1073/pnas.1510805112

Marques, David Alexander; Lucek, Kay Jurka Olaf; Häsler, Marcel; Feller, Anna Fiona; Meier, Joana; Wagner, Catherine; Excoffier, Laurent; Seehausen, Ole (2016). Genomic landscape of early ecological speciation initiated by selection on nuptial colour. Molecular Ecology, 26(1), pp. 7-24. Wiley-Blackwell 10.1111/mec.13774

Meier, Joana; Martins Conde e Sousa, Vitor; Marques, David Alexander; Selz, Oliver; Wagner, Catherine; Excoffier, Laurent; Seehausen, Ole (2016). Demographic modeling with whole genome data reveals parallel origin of similar Pundamilia cichlid species after hybridization. Molecular Ecology, 26(1), pp. 123-141. Wiley-Blackwell 10.1111/mec.13838

Peischl, Stephan; Dupanloup, Isabelle; Bosshard, Lars; Excoffier, Laurent (2016). Genetic surfing in human populations: from genes to genomes. Current opinion in genetics & development, 41, pp. 53-61. Elsevier 10.1016/j.gde.2016.08.003


Weber de Melo, Vanessa; Sheikh Ali, Hanan; Freise, Jona; Kühnert, Denise; Essbauer, Sandra; Mertens, Marc; Wanka, Konrad M.; Drewes, Stephan; Ulrich, Rainer G.; Heckel, Gerald (2015). Spatiotemporal dynamics of Puumala hantavirus associated with its rodent host, Myodes glareolus. Evolutionary applications, 8(6), pp. 545-559. Wiley 10.1111/eva.12263

Zemanova, Miriam Andela; Knop, Eva; Heckel, Gerald (2015). Development and characterization of novel microsatellite markers for Arion slug species. Conservation genetics resources, 7(2), pp. 501-503. Springer 10.1007/s12686-014-0406-2

Peischl, Stephan; Excoffier, Laurent (2015). Expansion load: recessive mutations and the role of standing genetic variation. Molecular Ecology, 24(9), pp. 2084-2094. Wiley-Blackwell 10.1111/mec.13154

Peischl, Stephan; Kirkpatrick, Mark; Excoffier, Laurent (2015). Expansion Load and the Evolutionary Dynamics of a Species Range. The American naturalist, 185(4), E81-E93. University of Chicago Press 10.1086/680220

Sheikh Ali, Hanan; Drewes, Stephan; Weber de Melo, Vanessa; Schlegel, Mathias; Freise, Jona; Groschup, Martin H.; Heckel, Gerald; Ulrich, Rainer G. (2015). Complete genome of a Puumala virus strain from Central Europe. Virus genes, 50(2), pp. 292-298. Nijhoff 10.1007/s11262-014-1157-6

Botigué, Laura R.; Henn, Brenna M.; Peischl, Stephan; Dupanloup, Isabelle; Lipatov, Mikhail; Maples, Brian K.; Martin, Alicia R.; Yee, M.C.; Cann, Howard; Snyder, Michael P.; Excoffier, Laurent; Kidd, Jeffrey M.; Bustamante, Carlos D. (2015). The Out of Africa expansion affected accumulation of deleterious alleles in human genomes. American Journal of Physical Anthropology, 156(S60), pp. 90-91. Wiley

Amorim, Carlos Eduardo G.; Daub, Joséphine; Salzano, Francisco M.; Foll, Matthieu; Excoffier, Laurent (2015). Detection of convergent genome-wide signals of adaptation to tropical forests in humans. PLoS ONE, 10(4), pp. 1-19. Public Library of Science 10.1371/journal.pone.0121557

Beysard, Mathias; Krebs-Wheaton, Rebecca; Heckel, Gerald (2015). Tracing reinforcement through asymmetrical partner preference in the European common vole Microtus arvalis. BMC evolutionary biology, 15(1) BioMed Central 10.1186/s12862-015-0455-5

Daub, Joséphine; Duperret, Isabelle; Robinson-Rechavi, Marc; Excoffier, Laurent (2015). Inference of evolutionary forces acting on human biological pathways. Genome biology and evolution, 7(6), pp. 1546-1558. Oxford University Press 10.1093/gbe/evv083


Martins Conde e Sousa, Vitor; Peischl, Stephan; Excoffier, Laurent (2014). Impact of range expansions on current human genomic diversity. Current opinion in genetics & development, 29, pp. 22-30. Elsevier 10.1016/j.gde.2014.07.007

Avila, Dorita; Keiser, Olivia; Egger, Matthias; Kouyos, Roger; Böni, Jürg; Yerly, Sabine; Klimkait, Thomas; Vernazza, Pietro L; Aubert, Vincent; Rauch, Andri; Bonhoeffer, Sebastian; Günthard, Huldrych F; Stadler, Tanja; Spycher, Ben D (2014). Social Meets Molecular: Combining Phylogenetic and Latent Class Analyses to Understand HIV-1 Transmission in Switzerland. American journal of epidemiology, 179(12), pp. 1514-1525. Oxford University Press 10.1093/aje/kwu076

Seehausen, Ole; Butlin, Roger K.; Keller, Irene; Wagner, Catherine; Boughman, Janette W.; Hohenlohe, Paul A.; Peichel, Catherine L.; Saetre, Glenn-Peter; Bank, Claudia; Brännström, Åke; Brelsford, Alan; Clarkson, Chris S.; Eroukhmanoff, Fabrice; Feder, Jeffrey L.; Fischer, Martin; Foote, Andrew D.; Franchini, Paolo; Jiggins, Chris D.; Jones, Felicity C.; Lindholm, Anna K.; ... (2014). Genomics and the origin of species. Nature Reviews. Genetics, 15(3), pp. 176-192. Natue Publishing Group 10.1038/nrg3644

Beysard, Mathias; Heckel, Gerald (2014). Structure and dynamics of hybrid zones at different stages of speciation in the common vole (Microtus arvalis). Molecular Ecology, 23(3), pp. 673-687. Wiley-Blackwell 10.1111/mec.12613

Cucchi, Thomas; Barnett, Ross; Martínková, Natália; Renaud, Sabrina; Renvoisé, Elodie; Evin, Allowen; Sheridan, Alison; Mainland, Ingrid; Wickham-Jones, Caroline; Tougard, Christelle; Quéré, Jean-Pierre; Pascal, Michel; Pascal, Marine; Heckel, Gerald; O'Higgins, Paul; Searle, Jeremy B.; Dobney, Keith M. (2014). The changing pace of insular life: 5000 years of microevolution in the Orkney vole (Microtus arvalis orcadensis). Evolution, 68(10), pp. 2804-2820. Wiley 10.1111/evo.12476

Fischer, Martin; Foll, Matthieu; Heckel, Gerald; Excoffier, Laurent (2014). Continental-Scale Footprint of Balancing and Positive Selection in a Small Rodent (Microtus arvalis). PLoS ONE, 9(11), e112332. Public Library of Science

Foll, Matthieu; Gaggiotti, Oscar; Daub, Joséphine; Vatsiou, Alexandra; Excoffier, Laurent (2014). Widespread Signals of Convergent Adaptation to High Altitude in Asia and America. American journal of human genetics, 95(4), pp. 394-407. Cell Press 10.1016/j.ajhg.2014.09.002

Johne, Reimar; Dremsek, Paul; Reetz, Jochen; Heckel, Gerald; Hess, Michael; Ulrich, Rainer G. (2014). Hepeviridae: An expanding family of vertebrate viruses. Infection, genetics and evolution, 27, pp. 212-229. Elsevier 10.1016/j.meegid.2014.06.024

Lischer, Heidi; Excoffier, Laurent; Heckel, Gerald (2014). Ignoring heterozygous sites biases phylogenomic estimates of divergence times: implications for the evolutionary history of Microtus voles. Molecular Biology and Evolution, 31(4), pp. 817-831. Oxford University Press 10.1093/molbev/mst271

Mona, Stefano; Ray, Nicolas; Arenas Busto, Miguel; Excoffier, Laurent (2014). Genetic consequences of habitat fragmentation during a range expansion. Heredity, 112(3), pp. 291-299. Oliver and Boyd 10.1038/hdy.2013.105

Perry, George H.; Foll, Matthieu; Grenier, Jean-Christophe; Patin, Etienne; Nédélec, Yohann; Pacis, Alain; Barakatt, Maxime; Gravel, Simon; Zhou, Xiang; Nsobya, Sam L.; Excoffier, Laurent; Quintana-Murci, Lluis; Dominy, Nathaniel J.; Barreiro, Luis B. (2014). Adaptive, convergent origins of the pygmy phenotype in African rainforest hunter-gatherers. Proceedings of the National Academy of Sciences of the United States of America - PNAS, 111(35), E3596-E3603. National Academy of Sciences NAS 10.1073/pnas.1402875111

Schmidt, Sabrina; Essbauer, Sandra S.; Mayer-Scholl, Anne; Poppert, Sven; Schmidt-Chanasit, Jonas; Klempa, Boris; Henning, Klaus; Schares, Gereon; Groschup, Martin H.; Spitzenberger, Friederike; Richter, Dania; Heckel, Gerald; Ulrich, Rainer G. (2014). Multiple infections of rodents with zoonotic pathogens in Austria. Vector-Borne and Zoonotic Diseases, 14(7), pp. 467-475. Mary Ann Liebert 10.1089/vbz.2013.1504

Schubert, Mikkel; Jónsson, Hákon; Chang, Dan; Der Sarkissian, Clio; Ermini, Luca; Ginolhac, Aurélien; Albrechtsen, Anders; Dupanloup, Isabelle; Foucal, Adrien; Petersen, Bent; Fumagalli, Matteo; Raghavan, Maanasa; Seguin-Orlando, Andaine; Korneliussen, Thorfinn S.; Velazquez, Amhed M. V.; Stenderup, Jesper; Hoover, Cindi A.; Rubin, Carl-Johan; Alfarhan, Ahmed H.; Alquraishi, Saleh A.; ... (2014). Prehistoric genomes reveal the genetic foundation and cost of horse domestication. Proceedings of the National Academy of Sciences of the United States of America - PNAS, 111(52), E5661-E5669. National Academy of Sciences NAS 10.1073/pnas.1416991111

Sheikh Ali, Hanan; Drewes, Stephan; Sadowska, Edyta T.; Mikowska, Magdalena; Groschup, Martin H.; Heckel, Gerald; Koteja, Pawel; Ulrich, Rainer G. (2014). First Molecular Evidence for Puumala Hantavirus in Poland. Viruses, 6(1), pp. 340-353. Molecular Diversity Preservation International MDPI 10.3390/v6010340

Arenas Busto, Miguel; Mona, Stefano; Trochet, Audrey; Sramkova Hanulova, Anna; Currat, Mathias; Ray, Nicolas; Chikhi, Lounes; Rasteiro, Rita; Schmeller, Dirk S.; Excoffier, Laurent (2014). The scaling of genetic diversity in a changing and fragmented world. In: Henle, Klaus; Potts, Simon; Kunin, William; Matsinos, Yiannis; Simila, Jukka; Pantis, John; Grobelnik, Vesna; Penev, Lyubomir; Settele, Josef (eds.) Scaling in Ecology and Biodiversity Conservation. Advanced Books (pp. 55-60). Sofia, Bulgaria: Pensoft Publishers

Excoffier, Laurent; Quilodrán, Claudio; Currat, Mathias (2014). Models of hybridization during range expansions and their application to recent human evolution. In: Derevianko, A.P.; Shunkov, M.V. (eds.) Cultural Developments in the Eurasian Paleolithic and the Origin of Anatomically Modern Humans (pp. 122-137). Novosibirsk: Publishing Department of the Institute of Archaeology and Ethnography SB RAS

Beysard, Mathias (2014). Speciation and hybridization in the common vole (Microtus arvalis). (Dissertation, Institute of Ecology and Evolution, Faculty of Science)


Kittl, Sonja; Heckel, Gerald; Korczak, Bozena; Kuhnert, Peter (2013). Source attribution of human Campylobacter isolates by MLST and fla-typing and association of genotypes with quinolone resistance. PLoS ONE, 8(11), e81796. Public Library of Science 10.1371/journal.pone.0081796

Excoffier, Laurent; Dupanloup, Isabelle; Huerta-Sánchez, Emilia; Sousa, Vitor C.; Foll, Matthieu (2013). Robust demographic inference from genomic and SNP data. PLoS genetics, 9(10), e1003905. Public Library of Science 10.1371/journal.pgen.1003905

Martinkova, Natália; Barnett, Ross; Cucchi, Thomas; Struchen, Rahel; Pascal, Marine; Pascal, Michel; Fischer, Martin C.; Higham, Thomas; Brace, Selina; Ho, Simon Y. W.; Quere, Jean-Pierre; O'Higgins, Paul; Excoffier, Laurent; Heckel, Gerald; Hoelzel, A. Rus; Dobney, Keith M.; Searle, Jeremy B. (2013). Divergent evolutionary processes associated with colonization of offshore islands. Molecular Ecology, 22(20), pp. 5205-5220. Wiley-Blackwell 10.1111/mec.12462

Daub, Joséphine; Hofer, Tamara; Cutivet, Emilie; Duperret, Isabelle; Quintana-Murci, L; Robinson-Rechavi, M; Excoffier, Laurent (2013). Evidence for Polygenic Adaptation to Pathogens in the Human Genome. Molecular Biology and Evolution, 30(7), pp. 1544-1558. Oxford University Press 10.1093/molbev/mst080

Liu, Yang; Keller, Irene; Heckel, Gerald (2013). Temporal genetic structure and relatedness in the Tufted Duck Aythya fuligula suggests limited kin association in winter. Ibis, 155(3), pp. 499-507. Wiley-Blackwell 10.1111/ibi.12059

Dong, Lu; Heckel, Gerald; Liang, Wei; Zhang, Yanyun (2013). Phylogeography of silver pheasant (Lophura nycthemera L.) across China: aggregate effects of refugia, introgression, and riverine barriers. Molecular Ecology, 22(12), pp. 3376-3390. Wiley-Blackwell 10.1111/mec.12315

White, Thomas A.; Perkins, Sarah E.; Heckel, Gerald; Searle, Jeremy B. (2013). Adaptive evolution during an ongoing range expansion: the invasive bank vole (Myodes glareolus) in Ireland. Molecular Ecology, 22(11), pp. 2971-2985. Wiley-Blackwell 10.1111/mec.12343

Kindler, Eveline; Trojnar, Eva; Heckel, Gerald; Otto, Peter H.; Johne, Reimar (2013). Analysis of rotavirus species diversity and evolution including the newly determined full-length genome sequences of rotavirus F and G. Infection, genetics and evolution, 14, pp. 58-67. Elsevier 10.1016/j.meegid.2012.11.015

Sunnaker, Mikael; Busetto, Alberto Giovanni; Numminen, Elina; Corander, Jukka; Foll, Matthieu; Dessimoz, Christophe (2013). Approximate Bayesian Computation. PLoS computational biology, 9(1), e1002803. Public Library of Science 10.1371/journal.pcbi.1002803

Arenas, Miguel; François, Olivier; Currat, Mathias; Ray, Nicolas; Excoffier, Laurent (2013). Influence of Admixture and Paleolithic Range Contractions on Current European Diversity Gradients. Molecular Biology and Evolution, 30(1), pp. 57-61. Oxford University Press 10.1093/molbev/mss203

Peischl, Stephan; Duperret, Isabelle; Kirkpatrick, Mark; Excoffier, Laurent (2013). On the accumulation of deleterious mutations during range expansions. Molecular Ecology, 22(24), pp. 5972-5982. Wiley-Blackwell 10.1111/mec.12524

Sutter, A.; Beysard, M.; Heckel, G. (2013). Sex-specific clines support incipient speciation in a common European mammal. Heredity, 110(4), pp. 398-404. Oliver and Boyd 10.1038/hdy.2012.124

Lischer, Heidi (2013). Genomic inference of evolutionary history and gene expression divergence in rodents. (Dissertation, University of Bern)

Peischl, Stephan; Koch, E.; Guerrero, R. F.; Kirkpatrick, Mark (2013). A sequential coalescent algorithm for chromosomal inversions. Heredity, 111(3), pp. 200-209. Oliver and Boyd 10.1038/hdy.2013.38


Alves, Isabel; Srámková Hanulová, A.; Foll, Matthieu; Excoffier, Laurent (2012). Genomic Data Reveal a Complex Making of Humans. PLoS genetics, 8(7), e1002837. San Francisco, Calif.: Public Library of Science 10.1371/journal.pgen.1002837

Arenas, M.; Ray, N.; Currat, M.; Excoffier, L. (2012). Consequences of Range Contractions and Range Shifts on Molecular Diversity. Molecular Biology and Evolution, 29(1), pp. 207-218. Oxford: Oxford University Press 10.1093/molbev/msr187

Bastos-Silveira, C.; Santos, S.M.; Monarca, R.; Mathias Mda, L.; Heckel, G. (2012). Deep mitochondrial introgression and hybridization among ecologically divergent vole species. Molecular Ecology, 21(21), pp. 5309-5323. Oxford: Wiley-Blackwell 10.1111/mec.12018

Beysard, M.; Perrin, N.; Jaarola, M.; Heckel, G.; Vogel, P. (2012). Asymmetric and differential gene introgression at a contact zone between two highly divergent lineages of field voles (Microtus agrestis). Journal of Evolutionary Biology, 25(2), pp. 400-408. Basel: Wiley 10.1111/j.1420-9101.2011.02432.x

Caetano, S.; Currat, M.; Pennington, R.T.; Prado, D.; Excoffier, L.; Naciri, Y. (2012). Recent colonization of the Galapagos by the tree Geoffroea spinosa Jacq. (Leguminosae). Molecular Ecology, 21(11), pp. 2743-2760. Oxford: Wiley-Blackwell 10.1111/j.1365-294X.2012.05562.x

Hofer, Tamara; Foll, Matthieu; Excoffier, Laurent (2012). Evolutionary forces shaping genomic islands of population differentiation in humans. BMC Genomics, 13(1), p. 107. London: BioMed Central 10.1186/1471-2164-13-107

Johne, R.; Dremsek, P.; Kindler, E.; Schielke, A.; Plenge-Bönig, A.; Gregersen, H.; Wessels, U.; Schmidt, K.; Rietschel, W.; Groschup, M.H.; Guenther, S.; Heckel, G.; Ulrich, R.G. (2012). Rat hepatitis E virus: geographical clustering within Germany and serological detection in wild Norway rats (Rattus norvegicus). Infection, genetics and evolution, 12(5), pp. 947-956. Amsterdam: Elsevier 10.1016/j.meegid.2012.02.021

Kindler, E.; Arlettaz, R.; Heckel, G. (2012). Deep phylogeographic divergence and cytonuclear discordance in the grasshopper Oedaleus decorus. Molecular phylogenetics and evolution, 65(2), pp. 695-704. San Diego, Calif.: Elsevier 10.1016/j.ympev.2012.07.025

Kormann, U.; Gugerli, F.; Ray, N.; Excoffier, L.; Bollmann, K. (2012). Parsimony-based pedigree analysis and individual-based landscape genetics suggest topography to restrict dispersal and connectivity in the endangered capercaillie. Biological conservation, 152, pp. 241-252. Barking, UK: Elsevier 10.1016/j.biocon.2012.04.011

Kotrschal, A.; Heckel, G.; Bonfils, D.; Taborsky, B. (2012). Life-stage specific environments in a cichlid fish: implications for inducible maternal effects. Evolutionary ecology, 26(1), pp. 123-137. London: Springer Netherlands 10.1007/s10682-011-9495-5

Lischer, H.E.L.; Excoffier, L. (2012). PGDSpider: an automated data conversion tool for connecting population genetics and genomics programs. Bioinformatics, 28(2), pp. 298-299. Oxford: Oxford University Press 10.1093/bioinformatics/btr642

Liu, Y.; Keller, I.; Heckel, G. (2012). Breeding site fidelity and winter admixture in a long-distance migrant, the tufted duck (Aythya fuligula). Heredity, 109(2), pp. 108-116. London: Oliver and Boyd 10.1038/hdy.2012.19

Pimenoff, V.N.; Laval, G.; Comas, D.; Palo, J.U.; Gut, I.; Cann, H.; Excoffier, L.; Sajantila, A. (2012). Similarity in recombination rate and linkage disequilibrium at CYP2C and CYP2D cytochrome P450 gene regions among Europeans indicates signs of selection and no advantage of using tagSNPs in population isolates. Pharmacogenetics and genomics, 22(12), pp. 846-857. London: Lippincott Williams & Wilkins 10.1097/FPC.0b013e32835a3a6d

Reich, D; Patterson, N; Campbell, D; Tandon, A; Mazieres, S; Ray, N; Parra, MV; Rojas, W; Duque, C; Mesa, N; García, LF; Triana, O; Blair, S; Maestre, A; Dib, JC; Bravi, CM; Bailliet, G; Corach, D; Hünemeier, T; Bortolini, MC; ... (2012). Reconstructing Native American population history. Nature, 488(7411), pp. 370-374. London: Macmillan Journals Ltd. 10.1038/nature11258

Schlegel, M.; Kindler, E.; Essbauer, S.S.; Wolf, R.; Thiel, J.; Groschup, M.H.; Heckel, G.; Oehme, R.M.; Ulrich, R.G. (2012). Tula Virus Infections in the Eurasian Water Vole in Central Europe. Vector-Borne and Zoonotic Diseases, 12(6), pp. 503-513. Larchmont, N.Y.: Mary Ann Liebert 10.1089/vbz.2011.0784

Slatkin, M.; Excoffier, L. (2012). Serial Founder Effects During Range Expansion: A Spatial Analog of Genetic Drift. Genetics, 191(1), pp. 171-181. Bethesda, Md.: Genetics Society of America 10.1534/genetics.112.139022

White, TA; Lundy, MG; Montgomery, WI; Montgomery, S; Perkins, SE; Lawton, C; Meehan, JM; Hayden, TJ; Heckel, G; Reid N Searle, JB (2012). Range expansion in an invasive small mammal: influence of life-history and habitat quality. Biological invasions, 14(10), pp. 2203-2215. Dordrecht: Springer Netherlands 10.1007/s10530-012-0225-x

Widmer, I.; dal Grande, F.; Excoffier, L.; Holderegger, R.; Keller, C.; Mikryukov, V.S.; Scheidegger, C. (2012). European phylogeography of the epiphytic lichen fungus Lobaria pulmonaria and its green algal symbiont. Molecular Ecology, 21(23), pp. 5827-5844. Oxford: Wiley-Blackwell 10.1111/mec.12051

Peischl, Stephan; Kirkpatrick, Mark (2012). Establishment of new mutations in changing environments. Genetics, 191(3), pp. 895-906. Genetics Society of America 10.1534/genetics.112.140756

Kirkpatrick, Mark; Peischl, Stephan (2012). Evolutionary rescue by beneficial mutations in environments that change in space and time. Proceedings of the Royal Society. Series B - biological sciences, 368(1610), p. 20120082. Royal Society of London 10.1098/rstb.2012.0082


Bittner, David; Cossins, Andrew R; Segner, Helmut; Excoffier, Laurent; Largiadèr, Carlo R (2011). Identification of candidate genes and physiological pathways involved in gonad deformation in whitefish (Coregonus spp.) from Lake Thun, Switzerland. International journal of environmental research and public health, 8(7), pp. 2706-33. Basel: Molecular Diversity Preservation International MDPI 10.3390/ijerph8072706

Currat, Mathias; Excoffier, Laurent (2011). Strong reproductive isolation between humans and Neanderthals inferred from observed patterns of introgression. Proceedings of the National Academy of Sciences of the United States of America - PNAS, 108(37), pp. 15129-15134. Washington, D.C.: National Academy of Sciences NAS 10.1073/pnas.1107450108

Excoffier, Laurent; Foll, Matthieu (2011). fastsimcoal: a continuous-time coalescent simulator of genomic diversity under arbitrarily complex evolutionary scenarios. Bioinformatics, 27(9), pp. 1332-1334. Oxford: Oxford University Press 10.1093/bioinformatics/btr124

Fischer, Martin C.; Foll, Matthieu; Excoffier, Laurent; Heckel, Gerald (2011). Enhanced AFLP genome scans detect local adaptation in high-altitude populations of a small rodent (Microtus arvalis). Molecular Ecology, 20(7), pp. 1450-1462. Oxford: Wiley-Blackwell 10.1111/j.1365-294X.2011.05015.x

Hahne, Joerg; Jenkins, Tania; Halle, Stefan; Heckel, Gerald (2011). Establishment success and resulting fitness consequences for vole dispersers. Oikos, 120(1), pp. 95-105. Oxford: Blackwell 10.1111/j.1600-0706.2010.18589.x

Johne, R.; Heckel, G.; Plenge-Bonig, A.; Kindler, E.; Maresch, C.; Reetz, J.; Schielke, A.; Ulrich, R.G. (2011). Complete genome of a novel hepatitis E virus genotype in Norway rat, Germany [response]. Emerging infectious diseases, 17, pp. 1982-1983. Atlanta, Ga.: U.S. National Center for Infectious Diseases

Laurent, S.; Werzner, A.; Excoffier, L.; Stephan, W. (2011). Approximate Bayesian analysis of Drosophila melanogaster polymorphism data reveals a recent colonization of Southeast Asia. Molecular Biology and Evolution, 28(7), pp. 2041-2051. Oxford: Oxford University Press 10.1093/molbev/msr031

Liu, Y.; Keller, I.; Heckel, G. (2011). Range-wide genetic population structure in common pochard (Aythya ferina) a potentially important vector of highly pathogenic avian influenza viruses. Ecology, 1(4), pp. 529-545. Washington, D.C.: Ecological Society of America 10.1002/ece3.46

Mertens, M.; Kindler, E.; Emmerich, P.; Esser, J.; Wagner-Wiening, C.; Wolfel, R.; Petraityte-Burneikiene, R.; Schmidt-Chanasit, J.; Zvirbliene, A.; Groschup, M.H.; Dobler, G.; Pfeffer, M.; Heckel, G.; Ulrich, R.G.; Essbauer, S.S. (2011). Phylogenetic analysis of Puumala virus subtype Bavaria, characterization and diagnostic use of its recombinant nucleocapsid protein. Virus genes, 43(2), pp. 177-191. Boston, Mass.: Nijhoff 10.1007/s11262-011-0620-x

Moreau, Claudia; Bhérer, Claude; Vézina, Hélène; Jomphe, Michèle; Labuda, Damian; Excoffier, Laurent (2011). Deep Human Genealogies Reveal a Selective Advantage to Be on an Expanding Wave Front. Science, 334(6059), pp. 1148-1150. Washington, D.C.: American Association for the Advancement of Science 10.1126/science.1212880

Stovicek, O.; Cizkova, D.; Liu, Y.; Alrecht, T.; Heckel, G.; Vyscocilova, M.; Kresinger, J. (2011). Development of microsatellite markers for a diving duck, the common pochard (Aythya ferina). Conservation genetics resources, 3(3), pp. 573-576. Dordrecht: Springer 10.1007/s12686-011-9407-6

Schneider, Kristan A.; Peischl, Stephan (2011). Evolution of assortative mating in a population expressing dominance. PLoS ONE, 6(4), e16821. Public Library of Science 10.1371/journal.pone.0016821


Bittner, D; Excoffier, L; Largiadèr, C R (2010). Patterns of morphological changes and hybridization between sympatric whitefish morphs (Coregonus spp.) in a Swiss lake: a role for eutrophication? Molecular Ecology, 19(10), pp. 2152-67. Oxford: Wiley-Blackwell 10.1111/j.1365-294X.2010.04623.x

Beaumont, Mark A.; Nielsen, Rasmus; Robert, Christian; Hey, Jody; Gaggiotti, Oscar; Knowles, Lacey; Estoup, Arnaud; Panchal, Mahesh; Corander, Jukka; Hickerson, Mike; Sisso, Scott A.; Fagundes, Nelson; Chikhi, Lounes; Beerli, Peter; Vitalis, Renaud; Cornuet, Jean-Marie; Huelsenbeck, John; Foll, Matthieu; Yang, Ziheng; Rousset, Fraçois; ... (2010). In defence of model-based inference in phylogeography. Molecular Ecology, 19(3), pp. 436-446. Oxford: Wiley-Blackwell 10.1111/j.1365-294X.2009.04515.x

Crottini, Angelica; Galimberti, Andrea; Boto, Alberto; Serra, Lorenzo; Liu, Yang; Yeung, Carol; Yang, Xiaojun; Barbuto, Michela; Casiraghia, Maurizio (2010). Toward a resolution of a taxonomic enigma: First genetic analyses of Paradoxornis webbianus and Paradoxornis alphonsianus (Aves: Paradoxornithidae) from China and Italy. Molecular phylogenetics and evolution, 57(3), pp. 1312-1318. San Diego, Calif.: Elsevier 10.1016/j.ympev.2010.09.009

Estoup, Arnaud; Baird, Stuart J.E.; Ray, Nicolas; Currat, Mathias; Cornuet, Jean-Marie; Santos, Filipe; Beaumont, Mark A.; Excoffier, Laurent (2010). Combining genetic, historical and geographical data to reconstruct the dynamics of bioinvasions: application to the cane toad Bufo marinus. Molecular ecology resources, 10(5), pp. 886-901. Oxford: Blackwell Science 10.1111/j.1755-0998.2010.02882.x

Excoffier, Laurent; Lischer, Heidi E.L. (2010). Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows. Molecular ecology resources, 10(3), pp. 564-567. Oxford: Blackwell Science 10.1111/j.1755-0998.2010.02847.x

Fink, Sabine; Fischer, Martin C.; Excoffier, Laurent; Heckel, Gerald (2010). Genomic scans support repetitive continental colonization events during the rapid radiation of voles (Rodentia: Microtus): the utility of AFLPs versus mitochondrial and nuclear sequence markers. Systematic biology, 59(5), pp. 548-572. Cary, N.C.: Oxford University Press 10.1093/sysbio/syq042

Foll, Matthieu; Fischer, Martin C.; Heckel, Gerald; Excoffier, Laurent (2010). Estimating population structure from AFLP amplification intensity. Molecular Ecology, 19(21), pp. 4638-4647. Oxford: Wiley-Blackwell 10.1111/j.1365-294X.2010.04820.x

Francois, Olivier; Currat, Mathias; Ray, Nicolas; Han, Eunjung; Excoffier, Laurent; Novembre, John (2010). Principal Component Analysis under Population Genetic Models of Range Expansion and Admixture. Molecular Biology and Evolution, 27(6), pp. 1257-1268. Oxford: Oxford University Press 10.1093/molbev/msq010

Gaggiotti, Oscar E.; Foll, Matthieu (2010). Quantifying population structure using the F-model. Molecular ecology resources, 10(5), pp. 821-830. Oxford: Blackwell Science 10.1111/j.1755-0998.2010.02873.x

Halami, Mohammad Yahya; Dorrestein, Gerry M.; Couteel, Peter; Heckel, Gerald; Muller, Hermann; Johne, Reimar (2010). Whole genome characterization of a novel polyomavirus detected in fatally diseased canary birds. Journal of general virology, 91(12), pp. 3016-3022. Reading: Society for General Microbiology 10.1099/vir.0.023549-0

Henle, Klaus; Kunin, William; Schweiger, Oliver; Schmeller, Dirk S.; Grobelnik, Vesna; Matsinos, Yiannis; Pantis, John; Penev, Lyubomir; Potts, Simon G.; Ring, Irene; Similä, Jukka; Tzanopoulos, Joseph; van den Hove, Sybille; Baguette, Michel; Clobert, Jean; Excoffier, Laurent; Framstad, Erik; Grodzińska-Jurczak, Małgorzata; Lengyel, Szabolcs; Marty, Pascal; ... (2010). Securing the Conservation of Biodiversity across Administrative Levels and Spatial, Temporal, and Ecological Scales - Research Needs and Approaches of the SCALES Project. GAIA - ökologische Perspektiven für Wissenschaft und Gesellschaft / ecological perspectives for science and society, 19(3), pp. 187-193. München: Oekom Verlag

Johne, Reimar; Heckel, Gerald; Plenge-Bönig, Anita; Kindler, Eveline; Maresch, Christina; Reetz, Jochen; Schielke, Anika; Ulrich, Rainer G. (2010). Novel hepatitis E virus genotype in Norway rats, Germany. Emerging infectious diseases, 16(9), pp. 1452-1455. Atlanta, Ga.: U.S. National Center for Infectious Diseases 10.3201/eid1609.100444

Peter, Benjamin P.; Wegmann, Daniel; Excoffier, Laurent (2010). Distinguishing between population bottleneck and population subdivision by a Bayesian model choice procedure. Molecular Ecology, 19(21), pp. 4648-4660. Oxford: Wiley-Blackwell 10.1111/j.1365-294X.2010.04783.x

Ray, Nicolas; Currat, Mathias; Foll, Matthieu; Excoffier, Laurent (2010). SPLATCHE2: a spatially-explicit simulation framework for complex demography, genetic admixture and recombination. Bioinformatics, 26(23), pp. 2993-2994. Oxford: Oxford University Press 10.1093/bioinformatics/btq579

Ray, Nicolas; Excoffier, Laurent (2010). A first step towards inferring levels of long-distance dispersal during past expansions. Molecular ecology resources, 10(5), pp. 902-914. Oxford: Blackwell Science 10.1111/j.1755-0998.2010.02881.x

Ray, Nicolas; Wegmann, Daniel; Fagundes, Nelson J.R.; Wang, S.; Ruiz-Linares, Andres; Excoffier, Laurent (2010). A statistical evaluation of models for the initial settlement of the American continent emphasizes the importance of gene flow with Asia. Molecular Biology and Evolution, 27(2), pp. 337-345. Oxford: Oxford University Press 10.1093/molbev/msp238

Schmidt-Chanasit, Jonas; Essbauer, Sandra; Petraityte, Rasa; Yoshimatsu, Kumiko; Tackmann, Kirsten; Conraths, Franz J.; Sasnauskas, Kestutis; Arikawa, Jiro; Thomas, Astrid; Pfeffer, Martin; Scharninghausen, Jerrold J.; Splettstoesser, Wolf; Wenk, Matthias; Heckel, Gerald; Ulrich, Rainer G. (2010). Extensive host sharing of Central European Tula virus. Journal of virology, 84(1), pp. 459-474. Baltimore: American Society for Microbiology 10.1128/JVI.01226-09

Wegmann, Daniel; Excoffier, Laurent (2010). Bayesian Inference of the Demographic History of Chimpanzees. Molecular Biology and Evolution, 27(6), pp. 1425-1435. Oxford: Oxford University Press 10.1093/molbev/msq028

Wegmann, Daniel; Leuenberger, Christoph; Neuenschwander, Samuel; Excoffier, Laurent (2010). ABCtoolbox: a versatile toolkit for approximate Bayesian computations. BMC bioinformatics, 11(1), p. 116. London: BioMed Central 10.1186/1471-2105-11-116

Yang, Ning Ning; Mazières, Stephane; Bravi, Claudio; Ray, Nicolas; Wang, Sijia; Burley, Mari-Wyn; Bedoya, Gabriel; Rojas, Winston; Parra, Maria V.; Molina, Julio A.; Gallo, Carla; Poletti, Giovanni; Hill, Kim; Hurtado, Ana M.; Petzl-Erler, Maria L.; Tsuneto, Luiza T.; Klitz, William; Barrantes, Ramiro; Llop, Elena; Rothhammer, Francisco; ... (2010). Contrasting Patterns of Nuclear and mtDNA Diversity in Native American Populations. Annals of human genetics, 74(6), pp. 525-538. Oxford: Wiley-Blackwell 10.1111/j.1469-1809.2010.00608.x

Liang, Lu; Xu, Bing; Chen, Yanlei; Liu, Yang; Cao, Wuchun; Fang, Liqun; Feng, Limin; Goodchild, Michael F.; Gong, Peng (2010). Combining spatial-temporal and phylogenetic analysis approaches for improved understanding on global H5N1 transmission. PLoS ONE, 5(10), e13575. Lawrence, Kans.: Public Library of Science 10.1371/journal.pone.0013575

Peischl, Stephan; Schneider, Kristan A (2010). EVOLUTION OF DOMINANCE UNDER FREQUENCY-DEPENDENT INTRASPECIFIC COMPETITION IN AN ASSORTATIVELY MATING POPULATION. Evolution, 64(2), pp. 561-582. Wiley 10.1111/j.1558-5646.2009.00839.x

Peischl, Stephan (2010). Dominance and the maintenance of polymorphism in multiallelic migration-selection models with two demes. Theoretical population biology, 78(1), pp. 12-25. Elsevier 10.1016/j.tpb.2010.03.006


Braaker, Sonja; Heckel, Gerald (2009). Transalpine colonisation and partial phylogeographic erosion by dispersal in the common vole Microtus arvalis. Molecular Ecology, 18(11), pp. 2518-2531. Oxford: Wiley-Blackwell 10.1111/j.1365-294X.2009.04189.x

Chen, Shuihua; Chan, Shou-hua; Liu, Yang; Chan, Simba; Fan, Zhongyong; Chen, Cangsong; Yan, Chung-wei; Guo, Dongsheng (2009). A small population and severe threats: status of the Critically Endangered Chinese crested tern Sterna bernsteini. Oryx, 43(2), pp. 209-212. London: Cambridge University Press 10.1017/S0030605308001142

Excoffier, Laurent; Foll, Matthieu; Petit, Rémy J. (2009). Genetic Consequences of Range Expansions. Annual review of ecology, evolution, and systematics, 40(1), pp. 481-501. Palo Alto, Calif.: Annual Reviews Inc. 10.1146/annurev.ecolsys.39.110707.173414

Excoffier, Laurent; Hofer, Tamara; Foll, Matthieu (2009). Detecting loci under selection in a hierarchically structured population. Heredity, 103(4), pp. 285-298. London: Oliver and Boyd 10.1038/hdy.2009.74

Gaggiotti, Oscar E.; Bekkevold, Dorte; Jorgensen, Hanne B.H.; Foll, Matthieu; Carvalho, Gary R.; Andre, Carl; Ruzzante, Daniel E. (2009). Disentangling the effects of evolutionary, demographic, and environmental factors influencing genetic structure of natural populations: atlantic herring as a case study. Evolution, 63(11), 2939 - 2951. Hoboken, N.J.: Wiley 10.1111/j.1558-5646.2009.00779.x

Guillot, Gilles; Foll, Matthieu (2009). Correcting for ascertainment bias in the inference of population structure. Bioinformatics, 25(4), pp. 552-554. Oxford: Oxford University Press 10.1093/bioinformatics/btn665

Hofer, Tamara; Ray, Nicolas; Wegmann, Daniel; Excoffier, Laurent (2009). Large allele frequency differences between human continental groups are more likely to have occurred by drift during range expansions than by selection. Annals of human genetics, 73(Part 1), pp. 95-108. Oxford: Wiley-Blackwell 10.1111/j.1469-1809.2008.00489.x

Janin, Agnès; Lena, Jean-Paul; Ray, Nicolas; Delacourt, Christophe; Allemand, Pascal; Joly, Pierre (2009). Assessing landscape connectivity with calibrated cost-distance modelling: predicting common toad distribution in a context of spreading agriculture. Journal of Applied Ecology, 46(4), pp. 833-841. Oxford: Blackwell Scientific Publications 10.1111/j.1365-2664.2009.01665.x

Makrythanasis, Periklis; Kapranov, Philipp; Bartoloni, Lucia; Reymond, Alexandre; Deutsch, Samuel; Guigo, Roderic; Denoeud, France; Drenkow, Jorg; Rossier, Colette; Ariani, Francesca; Capra, Valeria; Excoffier, Laurent; Renieri, Alessandra; Gingeras, Thomas R.; Antonarakis, Stylianos E. (2009). Variation in Novel Exons (RACEfrags) of the MECP2 Gene in Rett Syndrome Patients and Controls. Human mutation, 30(9), E866 - E879. Hoboken, N.J.: Wiley-Blackwell 10.1002/humu.21073

Petit, Rémy J.; Excoffier, Laurent (2009). Gene flow and species delimitation. Trends in ecology & evolution, 24(7), pp. 386-393. Amsterdam: Elsevier Current Trends 10.1016/j.tree.2009.02.011

Poloni, Estella S.; Naciri, Yamama; Bucho, Rute; Niba, Régine; Kervaire, Barbara; Excoffier, Laurent; Langaney, André; Sanchez-Mazas, Alicia (2009). Genetic Evidence for Complexity in Ethnic Differentiation and History in East Africa. Annals of human genetics, 73(6), pp. 582-600. Oxford: Wiley-Blackwell 10.1111/j.1469-1809.2009.00541.x

Ray, Nicolas; Excoffier, Laurent (2009). Inferring past demography using spatially-explicit population genetic models. Human biology, 81(2-3), pp. 141-157. Detroit, Mich.: Wayne State University Press 10.3378/027.081.0303

Soland-Reckeweg, Gabriele; Heckel, Gerald; Neumann, Peter; Fluri, Peter; Excoffier, Laurent (2009). Gene flow in admixed populations and implications for the conservation of the Western honeybee, Apis mellifera. Journal of insect conservation, 13(3), pp. 317-328. London: Springer Netherlands 10.1007/s10841-008-9175-0

Ulrich, RG; Heckel, Gerald; Pelz, HJ; Wieler, LH; Nordhoff, M.; Dobler, G.; Freise, J.; Matuschka, FR; Jacob, J.; Schmidt-Chanasit, J.; Gerstengarbe, FW; Jaekel, T.; Suess, J.; Ehlers, B.; Nitsche, A.; Kallies, R.; Johne, R.; Guenther, S.; Henning, K.; Grunow, R.; ... (2009). Nagetiere und Nagetierassoziierte Krankheitserreger (Rodents and rodent associated disease pathogen). Bundesgesundheitsblatt, Gesundheitsforschung, Gesundheitsschutz, 52(3), pp. 352-369. Heidelberg: Springer-Medizin-Verlag 10.1007/s00103-009-0798-4

Wang, Ning; Liu, Yang; Zhang, Zeng-wang (2009). Characterization of nine microsatellite loci for a globally vulnerable species, Reeves pheasant (Syrmaticus reevesii). Conservation genetics, 10(5), pp. 1511-1514. Dordrecht: Springer 10.1007/s10592-008-9773-0

Wegmann, Daniel; Leuenberger, Christoph; Excoffier, Laurent (2009). Efficient Approximate Bayesian Computation Coupled With Markov Chain Monte Carlo Without Likelihood. Genetics, 182(4), pp. 1207-1218. Bethesda, Md.: Genetics Society of America 10.1534/genetics.109.102509


Giger, Thomas; Excoffier, Laurent; Amstutz, Ursula; Day, Philip J R; Champigneulle, Alexis; Hansen, Michael M; Kelso, Janet; Largiadèr, Carlo R (2008). Population transcriptomics of life-history variation in the genus Salmo. Molecular Ecology, 17(13), pp. 3095-3108. Oxford: Wiley-Blackwell 10.1111/j.1365-294X.2008.03820.x

Neuenschwander, Samuel; Largiadèr, Carlo R; Ray, Nicolas; Currat, Mathias; Vonlanthen, Pascal; Excoffier, Laurent (2008). Colonization history of the Swiss Rhine basin by the bullhead (Cottus gobio): inference under a Bayesian spatially explicit framework. Molecular Ecology, 17(3), pp. 757-772. Oxford: Wiley-Blackwell 10.1111/j.1365-294X.2007.03621.x

Currat, M.; Ray, N.; Excoffier, L. (2008). Genetic simulations of population interactions during past human expansions in Europe. In: Matsumura, S.; Forster, P.; Renfrew, C. (eds.) Simulations, Genetics and Human Prehistory (pp. 37-47). Cambridge: McDonald Institute for Archaeological Research

Currat, Mathias; Ruedi, Manuel; Petit, Rémy J.; Excoffier, Laurent (2008). The hidden side of invasions: massive introgression by local genes. Evolution, 62(8), pp. 1908-1920. Hoboken, N.J.: Wiley 10.1111/j.1558-5646.2008.00413.x

Excoffier, Laurent; Ray, Nicolas (2008). Surfing during population expansions promotes genetic revolutions and structuration. Trends in ecology & evolution, 23(7), pp. 347-351. Amsterdam: Elsevier Current Trends 10.1016/j.tree.2008.04.004

Excoffier, L.; Ray, N.; Currat, M. (2008). Where was Paradise? A simulation study of the spread of early modern humans in heterogeneous environments. In: Matsumura, S.; Forster, P.; Renfrew, C. (eds.) Simulations, Genetics and Human Prehistory (pp. 9-18). Cambridge: McDonald Institute for Archaeological Research

Fagundes, Nelson J. R.; Ray, Nicolas; Beaumont, Mark; Neuenschwander, Samuel; Salzano, Francisco M.; Bonatto, Sandro L.; Excoffier, Laurent (2008). Reply to Garrigan and Hammer: Ancient lineages and assimilation. Proceedings of the National Academy of Sciences of the United States of America - PNAS, 105(2), E4. Washington, D.C.: National Academy of Sciences NAS 10.1073/pnas.0711261105

Heckel, G.; Fink, S. (2008). Evolution of the arginine vasopressin 1 a receptor and implications for mammalian social behavior. In: Landgraf, Rainer; Neumann, Inga (eds.) Advances in vasopressin and oxytocin - from gene to behavior 170 (pp. 321-330). Amsterdam: Elsevier 10.1016/S0079-6123(08)00426-3

Ray, N.; Currat, M.; Excoffier, L. (2008). Incorporating environmental heterogeneity in spatially-explicit simulations of human genetic diversity. In: Matsumura, S.; Forster, P.; Renfrew, C. (eds.) Simulations, Genetics and Human Prehistory (pp. 103-117). Cambridge: McDonald Institute for Archaeological Research

Ray, Nicolas; Ebener, Steeve (2008). AccessMod 3.0: computing geographic coverage and accessibility to health care services using anisotropic movement of patients. International journal of health geographics, 7(1), p. 63. London: BioMed Central 10.1186/1476-072X-7-63

Ruedi, Manuel; Walter, Simon; Fischer, Martin C.; Scaravelli, Dino; Excoffier, Laurent; Heckel, Gerald (2008). Italy as a major Ice Age refuge area for the bat Myotis myotis (Chiroptera: Vespertilionidae) in Europe. Molecular Ecology, 17(7), pp. 1801-1814. Oxford: Wiley-Blackwell 10.1111/j.1365-294X.2008.03702.x

Schmidt-Chanasit, Jonas; Ölschläger, Stephan; Günther, Stephan; Jaeger, Gerold; Bleymehl, Karoline; Schäd, Susanne G.; Heckel, Gerald; Ulrich, Rainer G.; Doerr, Hans Wilhelm (2008). Molecular Analysis of Varicella-Zoster Virus Strains Circulating in Tanzania Demonstrating the Presence of Genotype M1. Journal of clinical microbiology, 46(10), pp. 3530-3533. Washington, D.C.: American Society for Microbiology 10.1128/JCM.01057-08

Ulrich, R. G.; Schmidt-Chanasit, J.; Schlegel, M.; Jacob, J.; Pelz, H.-J.; Mertens, M.; Wenk, M.; Büchner, T.; Masur, D.; Sevke, K.; Groschup, M. H.; Gerstengarbe, F.-W.; Pfeffer, M.; Oehme, R.; Wegener, W.; Bemmann, M.; Ohlmeyer, L.; Wolf, R.; Zoller, H.; Koch, J.; ... (2008). Network "Rodent-borne pathogens" in Germany: longitudinal studies on the geographical distribution and prevalence of hantavirus infections. Parasitology research, 103(Supplement 1), pp. 121-129. Berlin: Springer 10.1007/s00436-008-1054-9

Walser, Barbara; Heckel, Gerald (2008). Microsatellite markers for the common vole (Microtus arvalis) and their cross-species utility. Conservation genetics, 9(2), pp. 479-481. Dordrecht: Springer Netherlands 10.1007/s10592-007-9355-6

Wang, Sijia; Ray, Nicolas; Rojas, Winston; Parra, Maria V.; Bedoya, Gabriel; Gallo, Carla; Poletti, Giovanni; Mazzotti, Guido; Hill, Kim; Hurtado, Ana M.; Camrena, Beatriz; Nicolini, Humberto; Klitz, William; Barrantes, Ramiro; Molina, Julio A.; Freimer, Nelson B.; Bortolini, Maria Cátira; Salzano, Francisco M.; Petzl-Erler, Maria L.; Tsuneto, Luiza T.; ... (2008). Geographic Patterns of Genome Admixture in Latin American Mestizos. PLoS genetics, 4(3), e1000037. San Francisco, Calif.: Public Library of Science 10.1371/journal.pgen.1000037

Wegmann, Daniel; Dupanloup, Isabelle; Excoffier, Laurent (2008). Width of Gene Expression Profile Drives Alternative Splicing. PLoS ONE, 3(10), e3587. Lawrence, Kans.: Public Library of Science 10.1371/journal.pone.0003587

Peischl, Stephan; Buerger, Reinhard (2008). Evolution of dominance under frequency-dependent intraspecific competition. Journal of theoretical Biology, 251(2), pp. 210-226. Elsevier 10.1016/j.jtbi.2007.11.014


Vonlanthen, Pascal; Excoffier, Laurent; Bittner, David; Persat, H; Neuenschwander, S; Largiadèr, Carlo (2007). Genetic analysis of potential postglacial watershed crossings in central Europe by the bullhead (Cottus gobio L). Molecular Ecology, 16(21), pp. 4572-4584. Oxford: Wiley-Blackwell 10.1111/j.1365-294X.2007.03531.x

Giger, Thomas; Amstutz, Ursula; Excoffier, Laurent; Champigneulle, Alexis; Day, Philip; Powell, Richard; Largiadèr, Carlo (2007). The genetic basis of smoltification: Functional genomics tools facilitate the search for the needle in the haystack. In: Harris, Graeme; Millner, Nigel (eds.) Sea Trout: Biology Conservation and Management (pp. 183-195). Chichester: John Wiley & Sons 10.1002/9780470996027.ch13

Excoffier, Laurent (2007). Analysis of Population Subdivision. In: Balding, David J.; Bishop, Martin; Cannings, Chris (eds.) Handbook of Statistical Genetics (pp. 980-1020). Chichester: John Wiley & Sons

Fagundes, Nelson; Ray, Nicolas; Beaumont, Mark; Neuenschwander, Samuel; Salzano, Francisco; Bonatto, Sandro; Excoffier, Laurent (2007). Statistical evaluation of alternative models of human evolution. Proceedings of the National Academy of Sciences of the United States of America - PNAS, 104(45), pp. 17614-17619. Washington, D.C.: National Academy of Sciences NAS 10.1073/pnas.0708280104

Fink, Sabine; Excoffier, Laurent; Heckel, Gerhard (2007). High variability and non-neutral evolution of the mammalian avpr1a gene. BMC evolutionary biology, 7(1), p. 176. London: BioMed Central 10.1186/1471-2148-7-176

Nagy, Martina; Heckel, Gerald; Voigt, Christian; Mayer, Frieder (2007). Female-biased dispersal and patrilocal kin groups in a mammal with resource-defence polygyny. Proceedings of the Royal Society. Series B - biological sciences, 274(1628), pp. 3019-3025. London: Royal Society of London 10.1098/rspb.2007.1008

Pawlowski, Jan; Fahrni, José; Lecroq, B; Longet, David; Cornelius, N; Excoffier, Laurent; Cedhagen, Tomas; Gooday, Andrew (2007). Bipolar gene flow in deep-sea benthic foraminifera. Molecular Ecology, 16(19), pp. 4089-4096. Oxford: Wiley-Blackwell 10.1111/j.1365-294X.2007.03465.x

Schmidt-Chanasit, Jonas; Sturmer, Martin; Hahn, Anke; Schad, Susanne; Gross, Gerd; Ulrich, Rainer; Heckel, Gerald; Doerr, Hans (2007). Novel approach for genotyping varicella-zoster virus strains from Germany. Journal of clinical microbiology, 45(11), pp. 3540-3545. Washington, D.C.: American Society for Microbiology 10.1128/JCM.00979-07

Schweizer, Manuel; Excoffier, Laurent; Heckel, Gerald (2007). Fine-scale genetic structure and dispersal in the common vole (Microtus arvalis). Molecular Ecology, 16(12), pp. 2463-2473. Oxford: Wiley-Blackwell 10.1111/j.1365-294X.2007.03284.x

Wang, Sijia; Lewis, Cecil; Jakobsson, Mattias; Ramachandran, Sohini; Ray, Nicolas; Bedoya, Gabriel; Rojas, Winston; Parra, Maria; Molina, Julio; Gallo, Carla; Mazzotti, Guido; Poletti, Giovanni; Hill, Kim; Hurtado, Ana; Labuda, Damian; Klitz, William; Barrantes, Ramiro; Bortolini, Maria; Salzano, Francisco; Petzl-Erler, Maria; ... (2007). Genetic Variation and Population Structure in Native Americans. PLoS genetics, 3(11), e185. San Francisco, Calif.: Public Library of Science 10.1371/journal.pgen.0030185


Giger, Thomas; Excoffier, Laurent; Day, Philip J R; Champigneulle, Alexis; Hansen, Michael M; Powell, Richard; Largiadèr, Carlo R (2006). Life history shapes gene expression in salmonids. Current Biology, 16(8), R281-R282. Cambridge, Mass.: Cell Press 10.1016/j.cub.2006.03.053

Currat, Mathias; Excoffier, Laurent; Maddison, Wayne; Otto, Sarah; Ray, Nicolas; Whitlock, Michael; Yeaman, Sam (2006). Comment on "Ongoing adaptive evolution of ASPM, a brain size determinant in Homo sapiens" and "Microcephalin, a gene regulating brain size, continues to evolve adaptively in humans". Science, 313(5784), p. 172. Washington, D.C.: American Association for the Advancement of Science 10.1126/science.1122712

Berthier, Pierre; Excoffier, Laurent; Ruedi, Manuel (2006). Replacement of mtDNA and cryptic hybridization between two sibling bat species Myotis myotis and Myotis blythii. Proceedings of the Royal Society. Series B - biological sciences, 273(1605), pp. 3101-3123. London: Royal Society of London 10.1098/rspb.2006.3680

Drake, Jared; Bird, Christine; Nemesh, James; Thomas, Daryl; Newton-Cheh, Christopher; Reymond, Alexandre; Excoffier, Laurent; Attar, Homa; Antonarakis, Stylianos; Dermitzakis, Emmanouil; Hirschhorn, Joel (2006). Conserved noncoding sequences are selectively constrained and not mutation cold spots. Nature genetics, 38(2), pp. 223-227. New York, N.Y.: Nature America 10.1038/ng1710

Excoffier, Laurent (2006). Neandertal genetic diversity: A fresh look from old samples. Current Biology, 16(16), R650-R652. Cambridge, Mass.: Cell Press 10.1016/j.cub.2006.07.035

Excoffier, Laurent; Heckel, Gerald (2006). Computer programs for population genetics data analysis: a survival guide. Nature Reviews. Genetics, 7(10), pp. 745-758. London: Natue Publishing Group 10.1038/nrg1904

Fink, Sabine; Excoffier, Laurent; Heckel, Gerald (2006). Mammalian monogamy is not controlled by a single gene. Proceedings of the National Academy of Sciences of the United States of America - PNAS, 103(29), pp. 10956-10960. Washington, D.C.: National Academy of Sciences NAS 10.1073/pnas.0602380103

Klopfstein, Seraina; Currat, Mathias; Excoffier, Laurent (2006). The fate of mutations surfing on the wave of a range expansion. Molecular Biology and Evolution, 23(3), pp. 482-490. Oxford: Oxford University Press 10.1093/molbev/msj057

Wegmann, Daniel; Currat, Mathias; Excoffier, Laurent (2006). Molecular diversity after a range expansion in heterogeneous environments. Genetics, 174(4), pp. 2009-2020. Bethesda, Md.: Genetics Society of America 10.1534/genetics.106.062851

Behr, Oliver; von Helversen, Otto; Heckel, Gerald; Nagy, Martina; Voigt, Christian; Mayer, Frieder (2006). Territorial songs indicate male quality in the sac-winged bat Saccopteryx bilineata (Emballonuridae). Behavioral Ecology, 17(5), pp. 810-817. New York, N.Y.: Oxford University Press 10.1093/beheco/arl013

Voigt, Christian; Heckel, Gerald; von Helversen, Otto (2006). Conflicts and strategies in the harem polygynous mating system of the sac-winged bat Saccopteryx bilineata. In: Kunz, Thomas; Zubaid, Akbar; McCracken, Gary F. (eds.) Functional and Evolutionary Ecology of Bats (pp. 269-289). Oxford: Oxford University Press

Dupanloup, Isabelle; Kaessmann, Henrik (2006). Evolutionary simulations to detect functional lineage-specific genes. Bioinformatics, 22(15), pp. 1815-1822. Oxford University Press 10.1093/bioinformatics/btl280


Currat, Mathias; Excoffier, Laurent (2004). Modern Humans Did Not Admix with Neanderthals during Their Range Expansion into Europe. PLoS biology, 2(12), e421. Public Library of Science 10.1371/journal.pbio.0020421

Laval, Guillaume; Excoffier, Laurent (2004). SIMCOAL 2.0: a program to simulate genomic diversity over large recombining regions in a subdivided population with a complex history. Bioinformatics, 20(15), pp. 2485-2487. Oxford University Press 10.1093/bioinformatics/bth264


Balloux, François (2001). EASYPOP (Version 1.7): A Computer Program for Population Genetics Simulations. Journal of heredity, 92(3), pp. 301-302. Oxford University Press 10.1093/jhered/92.3.301

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