The untapped potential of macrofossils in ancient plant DNA research.

Schwörer, Christoph; Leunda, Maria; Alvarez, Nadir; Gugerli, Felix; Sperisen, Christoph (2022). The untapped potential of macrofossils in ancient plant DNA research. New Phytologist, 235(2), pp. 391-401. Wiley 10.1111/nph.18108

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The rapid development of ancient DNA (aDNA) analysis in the last decades has induced a paradigm shift in ecology and evolution. Driven by a combination of breakthroughs in DNA isolation techniques, high-throughput sequencing and bioinformatics, ancient genome-scale data for a rapidly growing variety of taxa is now available, allowing researchers to directly observe demographic and evolutionary processes over time. However, the vast majority of palaeogenomic studies still focuses on human or animal remains. In this article, we make the case for a vast untapped resource of ancient plant material that is ideally suited for palaeogenomic analyses: Plant remains such as needles, leaves, wood, seeds or fruits that are deposited in natural archives, such as lake sediments, permafrost or even ice caves. Such plant remains are commonly found in large numbers and in stratigraphic sequence through time and have so far been used primarily to reconstruct past local species presences and abundances. However, they are also unique repositories of genetic information with the potential to revolutionize the fields of ecology and evolution by directly studying microevolutionary processes over time. Here, we give an overview of the current state-of-the-art, address important challenges, and highlight new research avenues to inspire future research.

Item Type:

Journal Article (Further Contribution)

Division/Institute:

10 Strategic Research Centers > Oeschger Centre for Climate Change Research (OCCR)
08 Faculty of Science > Department of Biology > Institute of Plant Sciences (IPS) > Palaeoecology
08 Faculty of Science > Department of Biology > Institute of Plant Sciences (IPS)

UniBE Contributor:

Schwörer, Christoph and Leunda Esnaola, Maria

Subjects:

500 Science > 580 Plants (Botany)

ISSN:

1469-8137

Publisher:

Wiley

Language:

English

Submitter:

Pubmed Import

Date Deposited:

23 Mar 2022 08:35

Last Modified:

17 Jun 2022 00:13

Publisher DOI:

10.1111/nph.18108

PubMed ID:

35306671

Uncontrolled Keywords:

Holocene genetic diversity lake sediment palaeoecology palaeogenomics range shifts

BORIS DOI:

10.48350/167860

URI:

https://boris.unibe.ch/id/eprint/167860

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