Assessment of population structure by single nucleotide polymorphisms (SNPs) in goat breeds

Pariset, L; Cappuccio, I; Ajmone Marsan, P; Dunner, S; Luikart, G; England, PR; Obexer-Ruff, Gaby; Peter, C; Marletta, D; Pilla, F; Valentini, A; ECONOGENE, Consortium (2006). Assessment of population structure by single nucleotide polymorphisms (SNPs) in goat breeds. Journal of chromatography. B - analytical technologies in the biomedical and life sciences, 833(1), pp. 117-20. New York, N.Y.: Elsevier 10.1016/j.jchromb.2006.01.011

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Single nucleotide polymorphisms (SNPs) may be used in biodiversity studies and commercial tasks like traceability, paternity testing and selection for suitable genotypes. Twenty-seven SNPs were characterized and genotyped on 250 individuals belonging to eight Italian goat breeds. Multilocus genotype data were used to infer population structure and assign individuals to populations. To estimate the number of groups (K) to test in population structure analysis we used likelihood values and variance of the bootstrap samples, deriving optimal K from a drop in the likelihood and a rise in the variance plots against K.

Item Type:	Journal Article (Original Article)
Division/Institute:	05 Veterinary Medicine > Department of Clinical Research and Veterinary Public Health (DCR-VPH) > Institute of Genetics
UniBE Contributor:	Obexer, Gaby
ISSN:	1570-0232
Publisher:	Elsevier
Language:	English
Submitter:	Factscience Import
Date Deposited:	04 Oct 2013 14:45
Last Modified:	05 Dec 2022 14:13
Publisher DOI:	10.1016/j.jchromb.2006.01.011
PubMed ID:	16473052
Web of Science ID:	000236340200014
URI:	https://boris.unibe.ch/id/eprint/18481 (FactScience: 625)