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Beringer, Marc; Choudhury, Rimjhim Roy; Mandáková, Terezie; Grünig, Sandra; Poretti, Manuel; Leitch, Ilia J; Lysak, Martin A; Parisod, Christian (2024). Biased retention of environment-responsive genes following genome fractionation. Molecular biology and evolution, 41(8) Oxford University Press 10.1093/molbev/msae155
Bürki, Tala; Pulver, Valentin; Grünig, Sandra; Čertner, Martin; Parisod, Christian (2024). Adaptive differentiation on serpentine soil in diploid versus autotetraploid populations of Biscutella laevigata (Brassicaceae). Oikos, 2024(5) Wiley 10.1111/oik.09834
Sonnenwyl, Vincent; Dauphin, Benjamin; Fragnière, Yann; Clément, Benoît; Grünig, Sandra; Brodbeck, Sabine; Parisod, Christian; Kozlowski, Gregor; Gugerli, Felix (2024). Genetic underpinning of historical afforestation with allochthonous Pinus cembra in the northwestern Swiss Alps. Alpine Botany, 134(1), pp. 1-13. Springer 10.1007/s00035-023-00304-6
Eggenberg, Stefan; Champoud, Luca; Leibundgut, Mary; Parisod, Christian; Wyss, Louisa; Kozlowski, Gregor (2023). Calamagrostis lonana (Poaceae): a new grass species from the Pennine Alps (Switzerland). Candollea, 78(1), pp. 1-9. Conservatoire et Jardin botaniques de la Ville de Genève 10.15553/c2023v781a1
Shokrollahi, Shekoofeh; Yousefzadeh, Hamed; Parisod, Christian; Heshmati, Gholamali; Bina, Hamid; Ali, Shujait; Amirchakhmaghi, Narjes; Song, Yigang (2022). Phylogenetics and Biogeography of Lilium ledebourii from the Hyrcanian Forest. Diversity, 14(2), p. 137. MDPI AG 10.3390/d14020137
Parisod, Christian (2022). Plant speciation in the face of recurrent climate changes in the Alps. Alpine Botany, 132(1), pp. 21-28. Springer 10.1007/s00035-021-00259-6
Guillaume, Annie S.; Leempoel, Kevin; Rochat, Estelle; Rogivue, Aude; Kasser, Michel; Gugerli, Felix; Parisod, Christian; Joost, Stéphane (2021). Multiscale Very High Resolution Topographic Models in Alpine Ecology: Pros and Cons of Airborne LiDAR and Drone-Based Stereo-Photogrammetry Technologies. Remote sensing, 13(8), p. 1588. MDPI 10.3390/rs13081588
Nowak, Michael D.; Birkeland, Siri; Mandakova, Terezie; Choudhury, Rimjhim Roy; Guo, Xinyi; Gustafsson, Anna Lovisa S.; Gizaw, Abel; Schroder-Nielsen, Audun; Fracassetti, Marco; Brysting, Anne K.; Rieseberg, Loren; Slotte, Tanja; Parisod, Christian; Lysak, Martin A.; Brochmann, Christian (2021). The genome of Draba nivalis shows signatures of adaptation to the extreme environmental stresses of the Arctic. Molecular ecology resources, 21(3), pp. 661-676. Wiley 10.1111/1755-0998.13280
Wos, Guillaume; Choudhury, Rimjhim Roy; Kolar, Filip; Parisod, Christian (2021). Transcriptional activity of transposable elements along an elevational gradient in Arabidopsis arenosa. Mobile DNA, 12(1) BioMed Central 10.1186/s13100-021-00236-0
Grünig, Sandra; Fischer, Markus; Parisod, Christian (2021). Recent hybrid speciation at the origin of the narrow endemic Pulmonaria helvetica. Annals of Botany, 127(1), pp. 21-31. Oxford University Press 10.1093/aob/mcaa145
Konečná, Veronika; Bray, Sian; Vlček, Jakub; Bohutínská, Magdalena; Požárová, Doubravka; Choudhury, Rimjhim Roy; Bollmann-Giolai, Anita; Flis, Paulina; Salt, David E.; Parisod, Christian; Yant, Levi; Kolář, Filip (2021). Parallel adaptation in autopolyploid Arabidopsis arenosa is dominated by repeated recruitment of shared alleles. Nature Communications, 12(1), p. 4979. Springer Nature 10.1038/s41467-021-25256-5
Pittet, Loïc; Fragnière, Yann; Grünig, Sandra; Bétrisey, Sébastien; Clément, Benoît; Gerber, Emanuel; Ronikier, Michał; Kozlowski, Gregor; Parisod, Christian (2020). Genetic structure of the endemic Papaver occidentale indicates survival and immigration in the Western Prealps. Alpine Botany, 130(2), pp. 129-140. Springer 10.1007/s00035-020-00238-3
Fragnière, Yann; Pittet, Loïc; Clément, Benoît; Bétrisey, Sébastien; Gerber, Emanuel; Ronikier, Michał; Parisod, Christian; Kozlowski, Gregor (2020). Climate Change and Alpine Screes: No Future for Glacial Relict Papaver occidentale (Papaveraceae) in Western Prealps. Diversity, 12(9), p. 346. MDPI AG 10.3390/d12090346
Parisod, Christian; Badaeva, Ekaterina D. (2020). Chromosome restructuring among hybridizing wild wheats. New Phytologist, 226(5), pp. 1263-1273. Wiley-Blackwell 10.1111/nph.16415
Huynh, Stella; Broennimann, Olivier; Guisan, Antoine; Felber, François; Parisod, Christian Gérard (2020). Eco‐genetic additivity of diploids in allopolyploid wild wheats. Ecology Letters, 23(4), pp. 663-673. Wiley 10.1111/ele.13466
Zhang, Xi; van Doan, Cong; Arce, Carla C. M.; Hu, Lingfei; Gruenig, Sandra; Parisod, Christian; Hibbard, Bruce E.; Hervé, Maxime R.; Nielson, Chad; Robert, Christelle A. M.; Machado, Ricardo A. R.; Erb, Matthias (2019). Plant defense resistance in natural enemies of a specialist insect herbivore. Proceedings of the National Academy of Sciences of the United States of America - PNAS, 116(46), pp. 23174-23181. National Academy of Sciences NAS 10.1073/pnas.1912599116
Huynh, Stella; Marcussen, Thomas; Felber, François; Parisod, Christian Gérard (2019). Hybridization preceded radiation in diploid wheats. Molecular phylogenetics and evolution, 139, p. 106554. Elsevier 10.1016/j.ympev.2019.106554
Zhang, Xi; van Doan, Cong; Arce, Carla C.M.; Hu, Lingfei; Grünig, Sandra; Parisod, Christian Gérard; Hibbard, Bruce E.; Hervé, Maxime; Robert, Christelle A. M.; Machado, Ricardo A.R.; Erb, Matthias (24 July 2019). Plant defense resistance in natural enemies of a specialist insect herbivore (bioRxiv). Cold Spring Harbor Laboratory 10.1101/710681
Rogivue, Aude; Choudhury, Rimjhim R.; Zoller, Stefan; Joost, Stéphane; Felber, François; Kasser, Michel; Parisod, Christian Gérard; Gugerli, Felix (2019). Genome-wide variation in nucleotides and retrotransposons in alpine populations of Arabis alpina (Brassicaceae). Molecular ecology resources, 19(3), pp. 773-787. Blackwell Science 10.1111/1755-0998.12991
Dunning, Luke T.; Olofsson, Jill K.; Parisod, Christian Gérard; Choudhury, Rimjhim Roy; Moreno-Villena, Jose J.; Yang, Yang; Dionora, Jacqueline; Quick, W. Paul; Park, Minkyu; Bennetzen, Jeffrey L.; Besnard, Guillaume; Nosil, Patrik; Osborne, Colin P.; Christin, Pascal-Antoine (2019). Lateral transfers of large DNA fragments spread functional genes among grasses. Proceedings of the National Academy of Sciences of the United States of America - PNAS, 116(10), pp. 4416-4425. National Academy of Sciences NAS 10.1073/pnas.1810031116
Choudhury, Rimjhim Roy; Rogivue, Aude; Gugerli, Felix; Parisod, Christian Gérard (2019). Impact of polymorphic transposable elements on linkage disequilibrium along chromosomes. Molecular Ecology, 28(6), pp. 1550-1562. Wiley-Blackwell 10.1111/mec.15014
Mhiri, Corinne; Parisod, Christian; Daniel, Julien; Petit, Maud; Lim, K. Yoong; Dorlhac de Borne, François; Kovarik, Ales; Leitch, Andrew R.; Grandbastien, Marie-Angèle (2019). Parental transposable element loads influence their dynamics in young Nicotiana hybrids and allotetraploids. New Phytologist, 221(3), pp. 1619-1633. Wiley-Blackwell 10.1111/nph.15484
Leempoel, Kevin; Parisod, Christian Gérard; Geiser, Céline; Joost, Stéphane (2018). Multiscale landscape genomic models to detect signatures of selection in the alpine plant Biscutella laevigata. Ecology and evolution, 8(3), pp. 1794-1806. John Wiley & Sons, Inc. 10.1002/ece3.3778
Rogivue, Aude; Graf, René; Parisod, Christian; Holderegger, Rolf; Gugerli, Felix (2018). The phylogeographic structure of Arabis alpina in the Alps shows consistent patterns across different types of molecular markers and geographic scales. Alpine Botany, 128(1), pp. 35-45. Springer 10.1007/s00035-017-0196-8
Choudhury, Rimjhim Roy; Parisod, Christian (2017). Jumping genes: Genomic ballast or powerhouse of biological diversification. Molecular Ecology, 26(18), pp. 4587-4590. Wiley-Blackwell 10.1111/mec.14247
Parisod, Christian Gérard (2016). Profiling Transposable Elements and Their Epigenetic Effects in Non-model Species. In: Kovalchuk, Igor (ed.) Plant Epigenetics. Methods in Molecular Biology: Vol. 1456 (pp. 243-250). Boston, MA: Springer US 10.1007/978-1-4899-7708-3_19
