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Roder, Thomas; Pimentel, Grégory; Fuchsmann, Pascal; Stern, Mireille Tena; von Ah, Ueli; Vergères, Guy; Peischl, Stephan; Brynildsrud, Ola; Bruggmann, Rémy; Bär, Cornelia (2024). Scoary2: rapid association of phenotypic multi-omics data with microbial pan-genomes. Genome biology, 25(1) BioMed Central 10.1186/s13059-024-03233-7
Roder, Thomas; Oberhänsli, Simone; Shani, Noam; Bruggmann, Rémy (2022). OpenGenomeBrowser: a versatile, dataset-independent and scalable web platform for genome data management and comparative genomics. BMC Genomics, 23(1), p. 855. BioMed Central 10.1186/s12864-022-09086-3
García-Martín, Ana Bélen; Roder, Thomas; Schmitt, Sarah; Zeeh, Friederike; Bruggmann, Rémy; Perreten, Vincent (2022). Whole-genome analyses reveal a novel prophage and cgSNPs-derived sublineages of Brachyspira hyodysenteriae ST196. BMC Genomics, 23(1), p. 131. BioMed Central 10.1186/s12864-022-08347-5
Huber, Meret; Roder, Thomas; Irmisch, Sandra; Riedel, Alexander; Gablenz, Saskia; Fricke, Julia; Rahfeld, Peter; Reichelt, Michael; Paetz, Christian; Liechti, Nicole; Hu, Lingfei; Bont, Zoe; Ye, Meng; Huang, Wei; Robert, Christelle A. M.; Gershenzon, Jonathan; Erb, Matthias (2021). A beta-glucosidase of an insect herbivore determines both toxicity and deterrence of a dandelion defense metabolite. eLife, 10(68642) eLife Sciences Publications 10.7554/eLife.68642
Roder, Thomas; Wüthrich, Daniel; Bär, Cornelia; Sattari, Zahra; Ah, Ueli von; Ronchi, Francesca; Macpherson, Andrew; Ganal-Vonarburg, Stephanie C.; Bruggmann, Rémy; Vergères, Guy (2020). In Silico Comparison Shows that the Pan-Genome of a Dairy-Related Bacterial Culture Collection Covers Most Reactions Annotated to Human Microbiomes. Microorganisms, 8(7) MDPI 10.3390/microorganisms8070966
