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Knafou, Julien; Haas, Quentin; Borissov, Nikolay; Counotte, Michel; Low, Nicola; Imeri, Hira; Ipekçi, Aziz Mert; Buitrago Garcia, Diana; Heron, Leonie; Amini, Poorya; Teodoro, Douglas (2023). Ensemble of deep learning language models to support the creation of living systematic reviews for the COVID-19 literature. Systematic Reviews, 12(1), p. 94. BioMed Central 10.1186/s13643-023-02247-9
Ferdowsi, Sohrab; Knafou, Julien; Borissov, Nikolay; Vicente Alvarez, David; Mishra, Rahul; Amini, Poorya; Teodoro, Douglas (2023). Deep learning-based risk prediction for interventional clinical trials based on protocol design: A retrospective study. Patterns, 4(3), p. 100689. Cell Press 10.1016/j.patter.2023.100689
Borissov, Nikolay; Haas, Quentin; Minder, Beatrice; Kopp-Heim, Doris; von Gernler, Marc; Janka, Heidrun; Teodoro, Douglas; Amini, Poorya (2022). Reducing systematic review burden using Deduklick: a novel, automated, reliable, and explainable deduplication algorithm to foster medical research. Systematic Reviews, 11(1), p. 172. BioMed Central 10.1186/s13643-022-02045-9
Haas, Quentin; Borisov, Nikolay; Alvarez, David Vicente; Ferdowsi, Sohrab; von Mayenn, Leonhard; Teodoro, Douglas; Amini, Poorya (2021). Vaccine Development in the Time of COVID-19: The Relevance of the Risklick AI to Assist in Risk Assessment and Optimize Performance [perspective]. Frontiers in digital health, 3, p. 745674. Frontiers Media 10.3389/fdgth.2021.745674
Teodoro, Douglas; Ferdowsi, Sohrab; Borissov, Nikolay; Kashani, Elham; Vicente Alvarez, David; Copara, Jenny; Gouareb, Racha; Naderi, Nona; Amini, Poorya (2021). Information retrieval in an infodemic: the case of COVID-19 publications. Journal of medical internet research, 23(9), e30161. Centre of Global eHealth Innovation 10.2196/30161
Haas, Quentin; Alvarez, David Vicente; Borissov, Nikolay; Ferdowsi, Sohrab; von Meyenn, Leonhard; Trelle, Sven; Teodoro, Douglas; Amini, Poorya (2021). Utilizing Artificial Intelligence to Manage COVID-19 Scientific Evidence Torrent with Risklick AI: A Critical Tool for Pharmacology and Therapy Development. Pharmacology, 106(5-6), pp. 244-253. Karger 10.1159/000515908
Koskinas, Konstantinos C; Windecker, Stephan; Pedrazzini, Giovanni; Mueller, Christian; Cook, Stéphane; Matter, Christian M; Muller, Olivier; Häner, Jonas; Gencer, Baris; Crljenica, Carmela; Amini, Poorya; Deckarm, Olga; Iglesias, Juan F; Räber, Lorenz; Heg, Dik; Mach, François (2019). Evolocumab for Early Reduction of LDL-Cholesterol Levels in Patients with Acute Coronary Syndromes (EVOPACS). Journal of the American College of Cardiology, 74(20), pp. 2452-2462. Elsevier 10.1016/j.jacc.2019.08.010
Boeltz, Sebastian; Amini, Poorya; Anders, Hans-Joachim; Andrade, Felipe; Bilyy, Rostyslav; Chatfield, Simon; Cichon, Iwona; Clancy, Danielle M; Desai, Jyaysi; Dumych, Tetiana; Dwivedi, Nishant; Gordon, Rachael Ann; Hahn, Jonas; Hidalgo, Andrés; Hoffmann, Markus H; Kaplan, Mariana J; Knight, Jason S; Kolaczkowska, Elzbieta; Kubes, Paul; Leppkes, Moritz; ... (2019). To NET or not to NET:current opinions and state of the science regarding the formation of neutrophil extracellular traps. Cell death and differentiation, 26(3), pp. 395-408. Nature Publishing Group 10.1038/s41418-018-0261-x
Amini, Poorya; Stojkov, Darko; Felser, Andrea; Jackson, Christopher B; Courage, Carolina; Schaller, André; Gelman, Laurent; Soriano, Maria Eugenia; Nuoffer, Jean-Marc; Scorrano, Luca; Benarafa, Charaf; Yousefi, Shida; Simon, Hans-Uwe (2018). Neutrophil extracellular trap formation requires OPA1-dependent glycolytic ATP production. Nature communications, 9(1), p. 2958. Nature Publishing Group 10.1038/s41467-018-05387-y
Prince Eladnani, Raja; Bologna, Luca; Manetti, Mirko; Melchiorre, Daniela; Rosa, Irene; Dewarrat, Natacha; Suardi, Silvia; Amini, Poorya; Fernández, José A; Burnier, Laurent; Quarroz, Claudia; Reina Caro, Maria Desiré; Matsumura, Yasuhiro; Kremer Hovinga, Johanna Anna; Griffin, John H; Simon, Hans-Uwe; Ibba-Manneschi, Lidia; Saller, François; Calzavarini, Sara and Angelillo, Anne (2018). Targeting anticoagulant protein S to improve hemostasis in hemophilia. Blood, 131(12), pp. 1360-1371. American Society of Hematology 10.1182/blood-2017-09-800326
Stojkov, Darko; Amini, Poorya; Oberson, Kevin; Sokollik, Christiane; Duppenthaler, Andrea; Simon, Hans-Uwe; Yousefi, Shida (2017). ROS and glutathionylation balance cytoskeletal dynamics in neutrophil extracellular trap formation. Journal of cell biology, 216(12), pp. 4073-4090. Rockefeller University Press 10.1083/jcb.201611168
Amini, Poorya; Stojkov, Darko; Wang, Xiaoliang; Wicki, Simone; Kaufmann, Thomas; Wong, Wendy Wei-Lynn; Simon, Hans-Uwe; Yousefi, Shida (2016). NET formation can occur independently of RIPK3 and MLKL signaling. European journal of immunology, 46(1), pp. 178-184. Wiley-VCH 10.1002/eji.201545615
Yousefi, Shida; Morshed, Md. Mahbubul; Amini, Poorya; Stojkov, Darko; Simon, Dagmar; von Gunten, Stephan; Kaufmann, Thomas; Simon, Hans-Uwe (2015). Basophils exhibit antibacterial activity through extracellular trap formation. Allergy, 70(9), pp. 1184-1188. Wiley-Blackwell 10.1111/all.12662
Amini, Poorya (2016). Optic atrophy 1 (OPA1) is essential for NET formation and antibacterial functions in neutrophils (Submitted). (Dissertation, Graduate School for Cellular and Biomedical Sciences, Faculty of Medicine, University of Bern)
