Bauer, Stefan

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Number of items: 22.

Journal Article

Miladinović, Đorđe; Muheim, Christine; Bauer, Stefan; Spinnler, Andrea; Noain, Daniela; Bandarabadi, Mojtaba; Gallusser, Benjamin; Krummenacher, Gabriel; Baumann, Christian; Adamantidis, Antoine; Brown, Steven A; Buhmann, Joachim M (2019). SPINDLE: End-to-end learning from EEG/EMG to extrapolate animal sleep scoring across experimental settings, labs and species. PLoS computational biology, 15(4), e1006968. Public Library of Science 10.1371/journal.pcbi.1006968

Meier, Raphael; Knecht, Urspeter; Loosli, Tina; Bauer, Stefan; Slotboom, Johannes; Wiest, Roland; Reyes, Mauricio (2016). Clinical Evaluation of a Fully-automatic Segmentation Method for Longitudinal Brain Tumor Volumetry. Scientific Reports, 6(23376), p. 23376. Nature Publishing Group 10.1038/srep23376

Rios Velazquez, Emmanuel; Meier, Raphael; Dunn, William D; Alexander, Brian; Wiest, Roland; Bauer, Stefan; Gutman, David A; Reyes, Mauricio; Aerts, Hugo J W L (2015). Fully automatic GBM segmentation in the TCGA-GBM dataset: Prognosis and correlation with VASARI features. Scientific Reports, 5(16822), p. 16822. Nature Publishing Group 10.1038/srep16822

Porz, Nicole; Bauer, Stefan; Pica, Alessia; Schucht, Philippe; Beck, Jürgen; Verma, Rajeev Kumar; Slotboom, Johannes; Reyes, Mauricio; Wiest, Roland (2014). Multi-modal glioblastoma segmentation: man versus machine. PLoS ONE, 9(5), e96873. Public Library of Science 10.1371/journal.pone.0096873

Stenner, Frank; Liewen, Heike; Göttig, Stephan; Henschler, Reinhard; Markuly, Norbert; Kleber, Sascha; Faust, Michael; Mischo, Axel; Bauer, Stefan; Zweifel, Martin; Knuth, Alexander; Renner, Christoph; Wadle, Andreas (2013). RP1 is a phosphorylation target of CK2 and is involved in cell adhesion. PLoS ONE, 8(7), e67595. Public Library of Science 10.1371/journal.pone.0067595

Bauer, Stefan; Lu, Huanxiang; May, Christian P.; Nolte, Lutz-P.; Büchler, Philippe; Reyes, Mauricio (2013). Integrated Segmentation of Brain Tumor Images for Radiotherapy and Neurosurgery. International journal of imaging systems and technology, 23(1), pp. 59-63. John Wiley & Sons 10.1002/ima.22037

Bauer, Stefan; Fejes, Thomas; Reyes, Mauricio (2013). A Skull-Stripping Filter for ITK. Insight journal, 2012 Kitware, Inc.

Bauer, Stefan; Wiest, Roland; Nolte, Lutz-Peter; Reyes, Mauricio (2013). A survey of MRI-based medical image analysis for brain tumor studies. Physics in medicine and biology, 58(13), R97-R129. Bristol: Institute of Physics Publishing IOP 10.1088/0031-9155/58/13/R97

Bauer, Stefan; Ritacco, Lucas E.; Boesch, Chris; Nolte, Lutz-P.; Reyes, Mauricio (2012). Automatic Scan Planning for Magnetic Resonance Imaging of the Knee Joint. Annals of biomedical engineering, 40(9), pp. 2033-42. Cambridge: Springer US; 10.1007/s10439-012-0552-1

Bauer, Stefan; May, Christian; Dionysiou, Dimitra; Stamatakos, Georgios; Büchler, Philippe; Reyes, Mauricio (2011). Multi-Scale Modeling for Image Analysis of Brain Tumor Studies. IEEE transactions on biomedical engineering, 59(1), pp. 25-29. New York, N.Y.: Institute of Electrical and Electronics Engineers IEEE 10.1109/TBME.2011.2163406

Marias, Kostas; Dionysiou, Dimitra; Sakkalis, Vangelis; Graf, Norbert; Bohle, Rainer; Coveney, Peter; Wan, Shunzhou; Folarin, Amos; Büchler, Philippe; Reyes, Mauricio; Clapworthy, Gordon; Liu, Enjie; Sabczynski, J"org; Bily, Tomas; Roniotis, Alexandros; Tsiknakis, Manolis; Kolokotroni, Eleni; Giatili, Stavroula; Veith, Christian; Messe, E.; ... (2011). Clinically driven design of multi-scale cancer models : the ContraCancrum project paradigm. Interface - journal of the Royal Society, 1(3), pp. 450-461. London: The Royal Society 10.1098/rsfs.2010.0037

Samaras, Panagiotis; Blickenstorfer, Marcel; Haile, Sarah R; Siciliano, Raffaele Daniele; Petrausch, Ulf; Mischo, Axel; Zweifel, Martin; Honegger, Hanspeter; Schanz, Urs; Stussi, Georg; Taverna, Christian; Bauer, Stefan; Knuth, Alexander; Stenner-Liewen, Frank; Renner, Christoph (2011). Validation of prognostic factors and survival of patients with multiple myeloma in a real-life autologous stem cell transplantation setting: a Swiss single centre experience. Swiss medical weekly, 141, w13203. Muttenz: EMH Schweizerischer Ärzteverlag 10.4414/smw.2011.13203

Book Section

Bauer, Stefan; Wiest, Roland; Slotboom, Johannes; Reyes, Mauricio (2014). Atlas-based Segmentation of Tumor-bearing Brain Images. In: Hayat, M.A. (ed.) Molecular Mechanisms, Children's Cancer, Treatments, and Radiosurgery. Tumors of the Central Nervous System: Vol. 12 (pp. 159-169). Dordrecht: Springer 10.1007/978-94-007-7217-5_14

Conference or Workshop Item

Meier, Raphael; Bauer, Stefan; Slotboom, Johannes; Wiest, Roland; Reyes, Mauricio (September 2014). Patient-Specific Semi-Supervised Learning for Postoperative Brain Tumor Segmentation. In: Medical Image Computing and Computer-Assisted Intervention — MICCAI 2014. Proceedings, Part I. Lecture Notes in Computer Science: Vol. 17 (pp. 714-721). Springer

Bauer, Stefan; Porz, Nicole; Meier, Raphael; Pica, Alessia; Slotboom, Johannes; Wiest, Roland; Reyes, Mauricio (2014). Interactive Segmentation of MR Images from Brain Tumor Patients. In: ISBI 2014: Proceedings of the 2014 IEEE international conference on Biomedical imaging (pp. 862-865). Beijing: IEEE 10.1109/ISBI.2014.6868007

Bauer, Stefan; Gratz, Pascal P.; Gralla, Jan; Reyes, Mauricio; Wiest, Roland (2014). Towards Automatic MRI Volumetry for Treatment Selection in Acute Ischemic Stroke Patients. In: Proceedings of the 36th Annual International Conference of the IEEE EMBS. Chicago, IL. 26.08.-30.08.2014. 10.1109/EMBC.2014.6943891

Meier, Raphael; Bauer, Stefan; Slotboom, Johannes; Wiest, Roland; Reyes, Mauricio (2013). A Hybrid Model for Multimodal Brain Tumor Segmentation. NCI-MICCAI Challenge on Multimodal Brain Tumor Segmentation. Proceedings of NCI-MICCAI BRATS 2013, pp. 31-37. Nagoya: Miccai Society

Bauer, Stefan; Tessier, Jean; Krieter, Oliver; Nolte, Lutz-P.; Reyes, Mauricio (2013). Integrated Spatio-Temporal Segmentation of Longitudinal Brain Tumor Imaging Studies. In: Menze, Bjoern; Langs, Georg; Montillo, Albert; Kelm, Michael; Müller, Henning; Tu, Zhuowen (eds.) Medical Computer Vision. Large Data in Medical Imaging. Lecture Notes in Computer Science: Vol. 8331 (pp. 74-83). Springer International Publishing 10.1007/978-3-319-05530-5_8

Bauer, Stefan; Nolte, Lutz-Peter; Reyes, Mauricio (2011). Fully Automatic Segmentation of Brain Tumor Images using Support Vector Machine Classiffication in Combination with Hierarchical Conditional Random Field Regularization. In: Fichtinger, Gabor; Martel, Anne; Peters, Terry (eds.) Medical Image Computing and Computer-Assisted Intervention – MICCAI 2011. 14th International Conferenc. Lecture Notes in Computer Science: Vol. 6893 (pp. 354-361). Berlin: Springer 10.1007/978-3-642-23626-6_44

Bauer, Stefan; Nolte, Lutz-Peter; Reyes, Mauricio (2011). Segmentation of brain tumor images based on atlas-registration combined with a Markov-Random-Field lesion growth model. In: ISBI'11: Proceedings of the 2011 IEEE international conference on Biomedical imaging (pp. 2018-2021). IEEE Press 10.1109/ISBI.2011.5872808

Bauer, Stefan; Seiler, Christof; Bardyn, Thibaut; Buechler, Philippe; Reyes, Mauricio (2010). Atlas-Based Segmentation of Brain Tumor Images Using a Markov Random Field-Based Tumor Growth Model and Non-Rigid Registration. In: 32nd Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC) 2010 (pp. 4080-4083). IEEE 10.1109/IEMBS.2010.5627302

Bauer, Stefan; Reyes, Mauricio (2010). A Markov-Random-Field-Based Biomechanical Tumor Growth Model for Atlas-Based Segmentation of Brain Tumor Images. In: Proceedings of the 4th International Advanced Research Workshop on In Silico Oncology and Cancer Investigation.

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