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Amaral, Paulo; Carbonell-Sala, Silvia; De La Vega, Francisco M; Faial, Tiago; Frankish, Adam; Gingeras, Thomas; Guigo, Roderic; Harrow, Jennifer L; Hatzigeorgiou, Artemis G; Johnson, Rory; Murphy, Terence D; Pertea, Mihaela; Pruitt, Kim D; Pujar, Shashikant; Takahashi, Hazuki; Ulitsky, Igor; Varabyou, Ales; Wells, Christine A; Yandell, Mark; Carninci, Piero; ... (2023). The status of the human gene catalogue. Nature, 622(7981), pp. 41-47. Springer Nature 10.1038/s41586-023-06490-x
Mattick, John S; Amaral, Paulo P; Carninci, Piero; Carpenter, Susan; Chang, Howard Y; Chen, Ling-Ling; Chen, Runsheng; Dean, Caroline; Dinger, Marcel E; Fitzgerald, Katherine A; Gingeras, Thomas R; Guttman, Mitchell; Hirose, Tetsuro; Huarte, Maite; Johnson, Rory; Kanduri, Chandrasekhar; Kapranov, Philipp; Lawrence, Jeanne B; Lee, Jeannie T; Mendell, Joshua T; ... (2023). Long non-coding RNAs: definitions, functions, challenges and recommendations. Nature reviews. Molecular cell biology, 24(6), pp. 430-447. Springer Nature 10.1038/s41580-022-00566-8
Maquat, Lynne; Johnson, Rory; Valadkhan, Saba; Carninci, Piero (2022). Lessons from the functional characterization of lncRNAs: introduction to mammalian genome special issue. Mammalian genome, 33(2), pp. 245-247. Springer-Verlag 10.1007/s00335-022-09956-x
Grapotte, Mathys; Saraswat, Manu; Bessière, Chloé; Menichelli, Christophe; Ramilowski, Jordan A; Severin, Jessica; Hayashizaki, Yoshihide; Itoh, Masayoshi; Tagami, Michihira; Murata, Mitsuyoshi; Kojima-Ishiyama, Miki; Noma, Shohei; Noguchi, Shuhei; Kasukawa, Takeya; Hasegawa, Akira; Suzuki, Harukazu; Nishiyori-Sueki, Hiromi; Frith, Martin C; Chatelain, Clément; Carninci, Piero; ... (2021). Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network. Nature communications, 12(1), p. 3297. Nature Publishing Group 10.1038/s41467-021-23143-7
Michelini, Flavia; Jalihal, Ameya P.; Francia, Sofia; Meers, Chance; Neeb, Zachary Thomas; Rossiello, Francesca; Gioia, Ubaldo; Aguado, Julio; Jones-Weinert, Corey; Luke, Brian; Biamonti, Giuseppe; Nowacki, Mariusz; Storici, Francesca; Carninci, Piero; Walter, Nils G.; Fagagna, Fabrizio d’Adda di (2018). From “Cellular” RNA to “Smart” RNA: Multiple Roles of RNA in Genome Stability and Beyond. Chemical reviews, 118(8), pp. 4365-4403. American Chemical Society 10.1021/acs.chemrev.7b00487
Amaral, Paulo; Carbonell-Sala, Silvia; De La Vega, Francisco M; Faial, Tiago; Frankish, Adam; Gingeras, Thomas; Guigo, Roderic; Harrow, Jennifer L; Hatzigeorgiou, Artemis G; Johnson, Rory; Murphy, Terence D; Pertea, Mihaela; Pruitt, Kim D; Pujar, Shashikant; Takahashi, Hazuki; Ulitsky, Igor; Varabyou, Ales; Wells, Christine A; Yandell, Mark; Carninci, Piero; ... (24 March 2023). The status of the human gene catalogue. (arXiv). Cornell University
