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Wegner, Fanny; Cabrera-Gil, Blanca; Tanguy, Araud; Beckmann, Christiane; Beerenwinkel, Niko; Bertelli, Claire; Carrara, Matteo; Cerutti, Lorenzo; Chen, Chaoran; Cordey, Samuel; Dumoulin, Alexis; du Plessis, Louis; Friedli, Marc; Gerth, Yannick; Greub, Gilbert; Härri, Adrian; Hirsch, Hans; Howald, Cedric; Huber, Michael; Imhof, Alexander; ... (2024). How much should we sequence? An analysis of the Swiss SARS-CoV-2 surveillance effort. (In Press). Microbiology spectrum, e0362823. American Society for Microbiology 10.1128/spectrum.03628-23
Nadeau, Sarah A; Vaughan, Timothy G; Beckmann, Christiane; Topolsky, Ivan; Chen, Chaoran; Hodcroft, Emma; Schär, Tobias; Nissen, Ina; Santacroce, Natascha; Burcklen, Elodie; Ferreira, Pedro; Jablonski, Kim Philipp; Posada-Céspedes, Susana; Capece, Vincenzo; Seidel, Sophie; Santamaria de Souza, Noemi; Martinez-Gomez, Julia M; Cheng, Phil; Bosshard, Philipp P; Levesque, Mitchell P; ... (2023). Swiss public health measures associated with reduced SARS-CoV-2 transmission using genome data. Science translational medicine, 15(680), eabn7979. American Association for the Advancement of Science 10.1126/scitranslmed.abn7979
Wegner, Fanny; Roloff, Tim; Huber, Michael; Cordey, Samuel; Ramette, Alban; Gerth, Yannick; Bertelli, Claire; Stange, Madlen; Seth-Smith, Helena M B; Mari, Alfredo; Leuzinger, Karoline; Cerutti, Lorenzo; Harshman, Keith; Xenarios, Ioannis; Le Mercier, Philippe; Bittel, Pascal; Neuenschwander, Stefan; Opota, Onya; Fuchs, Jonas; Panning, Marcus; ... (2022). External quality assessment of SARS-CoV-2-sequencing: An ESGMD-SSM pilot trial across 15 European laboratories. Journal of clinical microbiology, 60(1), e0169821. American Society for Microbiology 10.1128/JCM.01698-21
Cordey, Samuel; Laubscher, Florian; Hartley, Mary-Anne; Junier, Thomas; Keitel, Kristina; Docquier, Mylène; Guex, Nicolas; Iseli, Christian; Vieille, Gael; Le Mercier, Philippe; Gleizes, Anne; Samaka, Josephine; Mlaganile, Tarsis; Kagoro, Frank; Masimba, John; Said, Zamzam; Temba, Hosiana; Elbanna, Gasser H; Tapparel, Caroline; Zanella, Marie-Celine; ... (2021). Blood virosphere in febrile Tanzanian children. Emerging microbes & infections, 10(1), pp. 982-993. Taylor & Francis 10.1080/22221751.2021.1925161
Junier, Thomas; Huber, Michael; Schmutz, Stefan; Kufner, Verena; Zagordi, Osvaldo; Neuenschwander, Stefan; Ramette, Alban; Kubacki, Jakub; Bachofen, Claudia; Qi, Weihong; Laubscher, Florian; Cordey, Samuel; Kaiser, Laurent; Beuret, Christian; Barbié, Valérie; Fellay, Jacques; Lebrand, Aitana (2019). Viral Metagenomics in the Clinical Realm: Lessons Learned from a Swiss-Wide Ring Trial. Genes, 10(9) MDPI 10.3390/genes10090655
Cordey, Samuel; Laubscher, Florian; Hartley, Mary-Anne; Junier, Thomas; Pérez-Rodriguez, Francisco J; Keitel, Kristina; Vieille, Gael; Samaka, Josephine; Mlaganile, Tarsis; Kagoro, Frank; Boillat-Blanco, Noémie; Mbarack, Zainab; Docquier, Mylène; Brito, Francisco; Eibach, Daniel; May, Jürgen; Sothmann, Peter; Aldrich, Cassandra; Lusingu, John; Tapparel, Caroline; ... (2019). Detection of dicistroviruses RNA in blood of febrile Tanzanian children. Emerging microbes & infections, 8(1), pp. 613-623. Taylor & Francis 10.1080/22221751.2019.1603791
Cordey, Samuel; Hartley, Mary-Anne; Keitel, Kristina; Laubscher, Florian; Brito, Francisco; Junier, Thomas; Kagoro, Frank; Samaka, Josephine; Masimba, John; Said, Zamzam; Temba, Hosiana; Mlaganile, Tarsis; Docquier, Mylène; Fellay, Jacques; Kaiser, Laurent; D'Acremont, Valérie (2018). Detection of novel astroviruses MLB1 and MLB2 in the sera of febrile Tanzanian children. Emerging microbes & infections, 7(1), p. 27. Taylor & Francis 10.1038/s41426-018-0025-1
Tapparel, Caroline; Cordey, Samuel; Van Belle, Sandra; Turin, Lara; Lee, Wai-Ming; Regamey, Nicolas; Meylan, Pascal; Mühlemann, Kathrin; Gobbini, Francesca; Kaiser, Laurent (2009). New molecular detection tools adapted to emerging rhinoviruses and enteroviruses. Journal of clinical microbiology, 47(6), pp. 1742-9. Washington, D.C.: American Society for Microbiology 10.1128/JCM.02339-08
Tapparel, Caroline; Junier, Thomas; Gerlach, Daniel; Van-Belle, Sandra; Turin, Lara; Cordey, Samuel; Mühlemann, Kathrin; Regamey, Nicolas; Aubert, John-David; Soccal, Paola M; Eigenmann, Philippe; Zdobnov, Evgeny; Kaiser, Laurent (2009). New respiratory enterovirus and recombinant rhinoviruses among circulating picornaviruses. Emerging infectious diseases, 15(5), pp. 719-726. Atlanta, Ga.: U.S. National Center for Infectious Diseases 10.3201/eid1505.081286
