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Iacovache, Mircea Ioan; De Carlo, Sacha; Cirauqui, Nuria; Dal Peraro, Matteo; van der Goot, F Gisou; Zuber, Benoît (2016). Cryo-EM structure of aerolysin variants reveals a novel protein fold and the pore-formation process. Nature communications, 7, p. 12062. Nature Publishing Group 10.1038/ncomms12062
Spiga, Enrico; Alemani, Davide; Degiacomi, Matteo; Cascella, Michele; Dal Peraro, Matteo (2013). Electrostatic-consistent coarse-grained potentials for molecular simulations of proteins. Journal of chemical theory and computation, 9(8), pp. 3515-3526. American Chemical Society 10.1021/ct400137q
Alemani, Davide; Collu, Francesca; Cascella, Michele; Dal Peraro, Matteo (2010). A Nonradial Coarse-Grained Potential for Proteins Produces Naturally Stable Secondary Structure Elements. Journal of chemical theory and computation, 6(1), pp. 315-324. Washington, D.C.: American Chemical Society 10.1021/ct900457z
Cascella, Michele; Dal Peraro, Matteo (2009). Challenges and perspective in biomolecular simulations: from the atomistic picture to multiscale modeling. CHIMIA, 63(1-2), pp. 14-18. Bern: Schweizerische Chemische Gesellschaft 10.2533/chimia.2009.14
Simona, Fabio; Magistrato, Alessandra; Dal Peraro, Matteo; Cavalli, Andrea; Vila, Alejandro J.; Carloni, Paolo (2009). Common mechanistic features among metallo-beta-lactamases: a computational study of aeromonas hydrophila CphA enzyme. Journal of biological chemistry, 284(41), pp. 28164-28171. Bethesda, Md.: American Society for Biochemistry and Molecular Biology 10.1074/jbc.M109.049502
Cascella, Michele; Neri, Marilisa A.; Carloni, Paolo; Dal Peraro, Matteo (2008). Topologically based multipolar reconstruction of electrostatic interactions in multiscale simulations of proteins. Journal of chemical theory and computation, 4(8), pp. 1378-1385. Washington, D.C.: American Chemical Society 10.1021/ct800122x
Iacovache, Mircea Ioan; Dal Peraro, Matteo; Gisou van der Goot, F. (2015). Aerolysin and Related Aeromonas Toxins. In: Alouf, Joseph E.; Ladant, Daniel; Popoff, Michel R. (eds.) The Comprehensive Sourcebook of Bacterial Protein Toxins (pp. 773-793). Amsterdam: Elsevier 10.1016/b978-0-12-800188-2.00026-4