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Amaral, Paulo; Carbonell-Sala, Silvia; De La Vega, Francisco M; Faial, Tiago; Frankish, Adam; Gingeras, Thomas; Guigo, Roderic; Harrow, Jennifer L; Hatzigeorgiou, Artemis G; Johnson, Rory; Murphy, Terence D; Pertea, Mihaela; Pruitt, Kim D; Pujar, Shashikant; Takahashi, Hazuki; Ulitsky, Igor; Varabyou, Ales; Wells, Christine A; Yandell, Mark; Carninci, Piero; ... (2023). The status of the human gene catalogue. Nature, 622(7981), pp. 41-47. Springer Nature 10.1038/s41586-023-06490-x

Amaral, Paulo; Carbonell-Sala, Silvia; De La Vega, Francisco M; Faial, Tiago; Frankish, Adam; Gingeras, Thomas; Guigo, Roderic; Harrow, Jennifer L; Hatzigeorgiou, Artemis G; Johnson, Rory; Murphy, Terence D; Pertea, Mihaela; Pruitt, Kim D; Pujar, Shashikant; Takahashi, Hazuki; Ulitsky, Igor; Varabyou, Ales; Wells, Christine A; Yandell, Mark; Carninci, Piero; ... (24 March 2023). The status of the human gene catalogue. (arXiv). Cornell University

Frankish, Adam; Carbonell-Sala, Sílvia; Diekhans, Mark; Jungreis, Irwin; Loveland, Jane E; Mudge, Jonathan M; Sisu, Cristina; Wright, James C; Arnan, Carme; Barnes, If; Banerjee, Abhimanyu; Bennett, Ruth; Berry, Andrew; Bignell, Alexandra; Boix, Carles; Calvet, Ferriol; Cerdán-Vélez, Daniel; Cunningham, Fiona; Davidson, Claire; Donaldson, Sarah; ... (2023). GENCODE: reference annotation for the human and mouse genomes in 2023. Nucleic acids research, 51(D1), D942-D949. Oxford University Press 10.1093/nar/gkac1071

Lagarde, Julien; Uszczynska-Ratajczak, Barbara; Carbonell, Silvia; Pérez-Lluch, Sílvia; Abad, Amaya; Davis, Carrie; Gingeras, Thomas R; Frankish, Adam; Harrow, Jennifer; Guigo, Roderic; Johnson, Rory (2017). High-throughput annotation of full-length long noncoding RNAs with capture long-read sequencing. Nature genetics, 49(12), pp. 1731-1740. Nature America 10.1038/ng.3988

Mas-Ponte, David; Carlevaro Fita, Joana; Palumbo, Emilio; Hermoso Pulido, Toni; Guigo, Roderic; Johnson, Rory (2017). LncATLAS database for subcellular localization of long noncoding RNAs. RNA - a publication of the RNA Society, 23(7), pp. 1080-1087. Cold Spring Harbor Laboratory Press 10.1261/rna.060814.117

Pulido-Quetglas, Carlos; Aparicio-Prat, Estel; Arnan, Carme; Polidori, Taisia; Hermoso, Toni; Palumbo, Emilio; Ponomarenko, Julia; Guigo, Roderic; Johnson, Rory Baldwin (2017). Scalable Design of Paired CRISPR Guide RNAs for Genomic Deletion. PLoS computational biology, 13(3), e1005341. Public Library of Science 10.1371/journal.pcbi.1005341

Makrythanasis, Periklis; Kapranov, Philipp; Bartoloni, Lucia; Reymond, Alexandre; Deutsch, Samuel; Guigo, Roderic; Denoeud, France; Drenkow, Jorg; Rossier, Colette; Ariani, Francesca; Capra, Valeria; Excoffier, Laurent; Renieri, Alessandra; Gingeras, Thomas R.; Antonarakis, Stylianos E. (2009). Variation in Novel Exons (RACEfrags) of the MECP2 Gene in Rett Syndrome Patients and Controls. Human mutation, 30(9), E866 - E879. Hoboken, N.J.: Wiley-Blackwell 10.1002/humu.21073