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Niessl, Julia; Sekine, Takuya; Lange, Joshua; Konya, Viktoria; Forkel, Marianne; Maric, Jovana; Rao, Anna; Mazzurana, Luca; Kokkinou, Efthymia; Weigel, Whitney; Llewellyn-Lacey, Sian; Hodcroft, Emma B.; Karlsson, Annika C; Fehrm, Johan; Sundman, Joar; Price, David A; Mjösberg, Jenny; Friberg, Danielle; Buggert, Marcus (2021). Identification of resident memory CD8+ T cells with functional specificity for SARS-CoV-2 in unexposed oropharyngeal lymphoid tissue. Science immunology, 6(64), eabk0894. American Association for the Advancement of Science 10.1126/sciimmunol.abk0894
Huddleston, John; Hadfield, James; Sibley, Thomas R; Lee, Jover; Fay, Kairsten; Ilcisin, Misja; Harkins, Elias; Bedford, Trevor; Neher, Richard A; Hodcroft, Emma B. (2021). Augur: a bioinformatics toolkit for phylogenetic analyses of human pathogens. Journal of Open Source Software, 6(57), p. 2906. Open Journals 10.21105/joss.02906
Vogels, Chantal B F; Breban, Mallery I; Ott, Isabel M; Alpert, Tara; Petrone, Mary E; Watkins, Anne E; Kalinich, Chaney C; Earnest, Rebecca; Rothman, Jessica E; Goes de Jesus, Jaqueline; Morales Claro, Ingra; Magalhães Ferreira, Giulia; Crispim, Myuki A E; Singh, Lavanya; Tegally, Houriiyah; Anyaneji, Ugochukwu J; Hodcroft, Emma B.; Mason, Christopher E; Khullar, Gaurav; Metti, Jessica; ... (2021). Multiplex qPCR discriminates variants of concern to enhance global surveillance of SARS-CoV-2. PLoS biology, 19(5), e3001236. Public Library of Science 10.1371/journal.pbio.3001236
Goncalves Cabecinhas, Ana Rita; Roloff, Tim; Stange, Madlen; Bertelli, Claire; Huber, Michael; Ramette, Alban; Chen, Chaoran; Nadeau, Sarah; Gerth, Yannick; Yerly, Sabine; Opota, Onya; Pillonel, Trestan; Schuster, Tobias; Metzger, Cesar M J A; Sieber, Jonas; Bel, Michael; Wohlwend, Nadia; Baumann, Christian; Koch, Michel C.; Bittel, Pascal; ... (2021). SARS-CoV-2 N501Y Introductions and Transmissions in Switzerland from Beginning of October 2020 to February 2021-Implementation of Swiss-Wide Diagnostic Screening and Whole Genome Sequencing. Microorganisms, 9(4), p. 677. MDPI 10.3390/microorganisms9040677
Grubaugh, Nathan D; Hodcroft, Emma B.; Fauver, Joseph R; Phelan, Alexandra L; Cevik, Muge (2021). Public health actions to control new SARS-CoV-2 variants [commentary]. Cell, 184(5), pp. 1127-1132. Cell Press 10.1016/j.cell.2021.01.044
Braun, Katarina M; Moreno, Gage K; Halfmann, Peter J; Hodcroft, Emma B.; Baker, David A; Boehm, Emma C; Weiler, Andrea M; Haj, Amelia K; Hatta, Masato; Chiba, Shiho; Maemura, Tadashi; Kawaoka, Yoshihiro; Koelle, Katia; O'Connor, David H; Friedrich, Thomas C (2021). Transmission of SARS-CoV-2 in domestic cats imposes a narrow bottleneck. PLoS pathogens, 17(2), e1009373. Public Library of Science 10.1371/journal.ppat.1009373
Lauring, Adam S; Hodcroft, Emma B. (2021). Genetic Variants of SARS-CoV-2-What Do They Mean? [viewpoint]. JAMA - the journal of the American Medical Association, 325(6), pp. 529-531. American Medical Association 10.1001/jama.2020.27124
