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Janowczyk, Andrew; Zlobec, Inti; Walker, Cedric; Berezowska, Sabina; Huschauer, Viola; Tinguely, Marianne; Kupferschmid, Joel; Mallet, Thomas; Merkler, Doron; Kreutzfeldt, Mario; Gasic, Radivoje; Rau, Tilman T; Mazzucchelli, Luca; Eyberg, Isgard; Cathomas, Gieri; Mertz, Kirsten D; Koelzer, Viktor H; Soldini, Davide; Jochum, Wolfram; Rössle, Matthias; ... (2024). Swiss digital pathology recommendations: results from a Delphi process conducted by the Swiss Digital Pathology Consortium of the Swiss Society of Pathology. Virchows Archiv, 485(1), pp. 13-30. Springer 10.1007/s00428-023-03712-5
Walker, Cédric; Talawalla, Tasneem; Toth, Robert; Ambekar, Akhil; Rea, Kien; Chamian, Oswin; Fan, Fan; Berezowska, Sabina; Rottenberg, Sven; Madabhushi, Anant; Maillard, Marie; Barisoni, Laura; Horlings, Hugo Mark; Janowczyk, Andrew (2024). PatchSorter: a high throughput deep learning digital pathology tool for object labeling. NPJ digital medicine, 7(1) Nature Publishing Group 10.1038/s41746-024-01150-4
Liu, Jonathan Tc; Chow, Sarah Sl; Colling, Richard; Downes, Michelle R; Farré, Xavier; Humphrey, Peter; Janowczyk, Andrew; Mirtti, Tuomas; Verrill, Clare; Zlobec, Inti; True, Lawrence D (2024). Engineering the future of 3D pathology. The journal of pathology: clinical research, 10(1), e347. Wiley 10.1002/cjp2.347
Frei, Ana Leni; Oberson, Raphaël; Baumann, Elias; Perren, Aurel; Grobholz, Rainer; Lugli, Alessandro; Dawson, Heather; Abbet, Christian; Lertxundi, Ibai; Reinhard, Stefan; Mookhoek, Aart; Feichtinger, Johann; Sarro, Rossella; Gadient, Gallus; Dommann-Scherrer, Corina; Barizzi, Jessica; Berezowska, Sabina; Glatz, Katharina; Dertinger, Susanne; Banz, Yara; ... (2023). Pathologist computer-aided diagnostic scoring of tumor cell fraction: A Swiss national study. Modern pathology, 36(12), p. 100335. Springer Nature 10.1016/j.modpat.2023.100335
Berezowska, Sabina; Cathomas, Gieri; Grobholz, Rainer; Henkel, Maurice; Jochum, Wolfram; Koelzer, Viktor H; Kreutzfeldt, Mario; Mertz, Kirsten D; Rössle, Matthias; Soldini, Davide; Zlobec, Inti; Janowczyk, Andrew (2023). Digital image analysis and artificial intelligence in pathology diagnostics-the Swiss view. Pathologie, 44(Suppl 3), pp. 222-224. Springer 10.1007/s00292-023-01262-w
Janowczyk, Andrew; Baumhoer, Daniel; Dirnhofer, Stefan; Grobholz, Rainer; Kipar, Anja; de Leval, Laurence; Merkler, Doron; Michielin, Olivier; Moch, Holger; Perren, Aurel; Rottenberg, Sven; Rubbia-Brandt, Laura; Rubin, Mark A; Sempoux, Christine; Tolnay, Markus; Zlobec, Inti; Koelzer, Viktor Hendrik (2022). Towards a national strategy for digital pathology in Switzerland. Virchows Archiv, 481(4), pp. 647-652. Springer 10.1007/s00428-022-03345-0
Viacava, Karen; Qiao, Jiangtao; Janowczyk, Andrew; Poudel, Suresh; Jacquemin, Nicolas; Meibom, Karin Lederballe; Shrestha, Him K; Reid, Matthew C; Hettich, Robert L; Bernier-Latmani, Rizlan (2022). Meta-omics-aided isolation of an elusive anaerobic arsenic-methylating soil bacterium. The ISME journal, 16(7), pp. 1740-1749. Springer Nature 10.1038/s41396-022-01220-z
Khan, Amjad; Janowczyk, Andrew; Müller, Felix; Blank, Annika; Nguyen, Huu Giao; Abbet, Christian; Studer, Linda; Lugli, Alessandro; Dawson, Heather; Thiran, Jean-Philippe; Zlobec, Inti (2022). Impact of scanner variability on lymph node segmentation in computational pathology. Journal of pathology informatics, 13(100127), p. 100127. Elsevier 10.1016/j.jpi.2022.100127
Lu, Cheng; Bera, Kaustav; Wang, Xiangxue; Prasanna, Prateek; Xu, Jun; Janowczyk, Andrew; Beig, Niha; Yang, Michael; Fu, Pingfu; Lewis, James; Choi, Humberto; Schmid, Ralph; Berezowska, Sabina; Schalper, Kurt; Rimm, David; Velcheti, Vamsidhar; Madabhushi, Anant (2020). A prognostic model for overall survival of patients with early-stage non-small cell lung cancer: a multicentre, retrospective study. The Lancet. Digital health, 2(11), e594-e606. Elsevier 10.1016/s2589-7500(20)30225-9
Marion, Solenne; Desharnais, Lyne; Studer, Nicolas; Dong, Yuan; Notter, Matheus D.; Poudel, Suresh; Menin, Laure; Janowczyk, Andrew; Hettich, Robert L; Hapfelmeier, Siegfried; Bernier-Latmani, Rizlan (2020). Biogeography of microbial bile acid transformations along the murine gut. Journal of lipid research, 61(11), pp. 1450-1463. American Society for Biochemistry and Molecular Biology ASBMB 10.1194/jlr.RA120001021
Unternaehrer, Julia; Grobholz, Rainer; Janowczyk, Andrew; Zlobec, Inti (2020). Current opinion, status and future development of digital pathology in Switzerland. Journal of clinical pathology, 73(6), pp. 341-346. BMJ Publishing Group 10.1136/jclinpath-2019-206155
Rumberger, Josef Lorenz; Baumann, Elias; Hirsch, Peter; Janowczyk, Andrew; Zlobec, Inti; Kainmueller, Dagmar (28 March 2022). Panoptic segmentation with highly imbalanced semantic labels. In: 2022 IEEE International Symposium on Biomedical Imaging Challenges (ISBIC). 10.1109/ISBIC56247.2022.9854551
