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Pulfer, Alain; Pizzagalli, Diego Ulisse; Gagliardi, Paolo Armando; Hinderling, Lucien; Lopez, Paul; Zayats, Romaniya; Carrillo-Barberà, Pau; Antonello, Paola; Palomino-Segura, Miguel; Grädel, Benjamin; Nicolai, Mariaclaudia; Giusti, Alessandro; Thelen, Marcus; Gambardella, Luca Maria; Murooka, Thomas T; Pertz, Olivier; Krause, Rolf; Gonzalez, Santiago Fernandez (2024). Transformer-based spatial-temporal detection of apoptotic cell death in live-cell imaging. eLife, 12 eLife Sciences Publications 10.7554/eLife.90502
Antonello, Paola; Morone, Diego; Pirani, Edisa; Uguccioni, Mariagrazia; Thelen, Marcus; Krause, Rolf; Pizzagalli, Diego Ulisse (2023). Tracking unlabeled cancer cells imaged with low resolution in wide migration chambers via U-NET class-1 probability (pseudofluorescence). Journal of biological engineering, 17(1), p. 5. 10.1186/s13036-022-00321-9
Pizzagalli, Diego Ulisse; Bordini, Joy; Morone, Diego; Pulfer, Alain; Carrillo-Barberà, Pau; Thelen, Benedikt; Ceni, Kevin; Thelen, Marcus; Krause, Rolf; Gonzalez, Santiago Fernandez (2022). CANCOL, a Computer-Assisted Annotation Tool to Facilitate Colocalization and Tracking of Immune Cells in Intravital Microscopy. Journal of immunology, 208(6), pp. 1493-1499. American Association of Immunologists 10.4049/jimmunol.2100811
Nestola, Maria Giuseppina Chiara; Becsek, Barna; Zolfaghari, Hadi; Zulian, Patrick; De Marinis, Dario; Krause, Rolf; Obrist, Dominik (2019). An immersed boundary method for fluid-structure interaction based on variational transfer. Journal of computational physics, 398, p. 108884. Elsevier 10.1016/j.jcp.2019.108884
Zolfaghari, Hadi; Becsek, Barna; Nestola, Maria; Sawyer, Will; Krause, Rolf; Obrist, Dominik (2019). High-order accurate simulation of incompressible turbulent flows on many parallel GPUs of a hybrid-node supercomputer. Computer Physics Communications, 244, pp. 132-142. Elsevier 10.1016/j.cpc.2019.06.012
Pizzagalli, Diego Ulisse; Farsakoglu, Yagmur; Palomino-Segura, Miguel; Palladino, Elisa; Sintes, Jordi; Marangoni, Francesco; Mempel, Thorsten R; Koh, Wan Hon; Murooka, Thomas T; Thelen, Flavian; Stein, Jens V; Pozzi, Giuseppe; Thelen, Marcus; Krause, Rolf; Gonzalez, Santiago Fernandez (2018). Leukocyte Tracking Database, a collection of immune cell tracks from intravital 2-photon microscopy videos. Scientific data, 5(180129), p. 180129. Nature Publishing Group 10.1038/sdata.2018.129
Nestola, Maria Giuseppina Chiara; Zulian, Patrick; Corso, Pascal; Obrist, Dominik; Krause, Rolf (April 2023). Embedded approaches for fluid-structure interaction problems with application to the numerical simulations of bio-prosthetic aortic valves (Unpublished). In: 22nd Computational Fluids Conference (CFC23). Cannes (France).
Becsek, Barna Errol Mario; De Marinis, Dario; Nestola, Maria; Krause, Rolf; Obrist, Dominik (14 August 2019). Bioprosthetic valve mechanics and the onset of turbulent systolic blood flow. In: CMBBE 2019. CMBBE 2019
Becsek, Barna Errol Mario; Nestola, Maria; Krause, Rolf; Obrist, Dominik (22 July 2019). Effect of valve tissue anisotropy on turbulent systolic blood flow past bioprosthetic hear valves. In: MCF2019.
Nestola, Maria; Becsek, Barna Errol Mario; Zolfaghari, Hadi; Obrist, Dominik; Krause, Rolf (2 July 2018). A novel FSI framework based on the variational IB method (Unpublished). In: ESMC 2018.
Becsek, Barna Errol Mario; Nestola, Maria Giuseppina Chiara; Krause, Rolf; Obrist, Dominik (2018). Parallel Numerical Library For Fluid-Structure Interaction In Biomechanics (Unpublished). In: ECCM-ECFD 2018. Glasgow.
Nestola, Maria; Becsek, Barna Errol Mario; Zolfaghari, Hadi; Obrist, Dominik; Krause, Rolf (26 June 2017). AV-Flow: a software library for FSI Problems based on Variational Transfer IB Methods (Unpublished). In: PASC17.
Becsek, Barna Errol Mario; Zolfaghari, Hadi; Nestola, Maria; Krause, Rolf; Obrist, Dominik (10 April 2017). Understanding Turbulent Flow issuing from the Aortic Valve (Unpublished). In: CMBE2017.
Nestola, Maria; Becsek, Barna Errol Mario; Zolfaghari, Hadi; Zulian, Patrick; Krause, Rolf; Obrist, Dominik (6 February 2017). An immersed boundary method based on the variational L2-projection approach (Unpublished). In: DD24.
Becsek, Barna Errol Mario; Nestola, Maria Giuseppina Chiara; Zolfaghari, Hadi; Krause, Rolf; Obrist, Dominik (2017). Aortic Valve Hemodynamics Using Variational Transfer Immersed Boundary Method (Unpublished). In: PASC17.
Zolfaghari, Hadi; Becsek, Barna Errol Mario; Nestola, Maria; Krause, Rolf; Obrist, Dominik (10 June 2016). GPU-accelerated Immersed Boundary Method for the efficient simulation of biomedical fluid-structure interactions (Unpublished). In: PASC16 Conference. Lausanne, Switzerland. 08.-10.06.2016.
Becsek, Barna Errol Mario; Nestola, Maria Giuseppina Chiara; Zolfaghari, Hadi; Krause, Rolf; Obrist, Dominik (2016). FD/FEM Coupling with the Immersed Boundary Method for the Simulation of Aortic Heart Valves (Unpublished). In: PASC16. Lausanne.
Becsek, Barna Errol Mario; Conen, Lea; Krause, Rolf; Obrist, Dominik (1 June 2015). FEM/FD Immersed Boundary FSI Simulations (Unpublished). In: PASC15. ETH Zurich. 01.06.-03.06.2015.
