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Müller, Simon A.; Gauthier, Marie-Emilie; Blackburn, James; Grady, John P.; Spiridoula, Kraitsek; Elektra, Hajdu; Dettmer, Matthias S.; Dahlstrom, Jane E.; Soon Lee, C.; Luk, Peter P.; Yu, Bing; Giger, Roland; Kummerfeld, Sarah; Clark, Jonathan R.; Gupta, Ruta; Cowley, Mark J. (2020). Molecular patterns in salivary duct carcinoma identify prognostic subgroups. Modern pathology, 33(10), pp. 1896-1909. Springer Nature 10.1038/s41379-020-0576-2
McCabe, Mark J; Gauthier, Marie-Emilie A; Chan, Chia-Ling; Thompson, Tanya J; De Sousa, Sunita M C; Puttick, Clare; Grady, John P; Gayevskiy, Velimir; Tao, Jiang; Ying, Kevin; Cipponi, Arcadi; Deng, Niantao; Swarbrick, Alex; Thomas, Melissa L; Lord, Reginald V; Johns, Amber L; Kohonen-Corish, Maija; O'Toole, Sandra A; Clark, Jonathan; Müller, Simon A.; ... (2019). Development and validation of a targeted gene sequencing panel for application to disparate cancers. Scientific reports, 9(1), p. 17052. Springer Nature 10.1038/s41598-019-52000-3
Müller, Simon A.; Gauthier, Marie-Emilie A; Ashford, Bruce; Gupta, Ruta; Gayevskiy, Velimir; Ch'ng, Sydney; Palme, Carsten E; Shannon, Kerwin; Clark, Jonathan R; Ranson, Marie; Cowley, Mark J (2019). Mutational Patterns in Metastatic Cutaneous Squamous Cell Carcinoma. Journal of investigative dermatology, 139(7), 1449-1458.e1. Elsevier 10.1016/j.jid.2019.01.008
Gruber, Nicolas; Gloor, Manuel; Mikaloff Fletcher, Sara E.; Doney, Scott C.; Dutkiewicz, Stephanie; Follows, Michael J.; Gerber, Markus; Jacobson, Andrew R.; Joos, Fortunat; Lindsay, Keith; Menemenlis, Dimitris; Mouchet, Anne; Müller, Simon A.; Sarmiento, Jorge L.; Takahashi, Taro (2009). Oceanic sources, sinks, and transport of atmospheric CO2. Global biogeochemical cycles, 23(1), n/a-n/a. Washington, D.C.: American Geophysical Union 10.1029/2008GB003349
Wanner, Heinz; Beer, Jürg; Bütikofer, Jonathan; Crowley, Thomas J.; Cubasch, Ulrich; Flückiger, Jacqueline; Goosse, Hugues; Grosjean, Martin; Joos, Fortunat; Kaplan, Jed O.; Küttel, Marcel; Müller, Simon A.; Prentice, I. Colin; Solomina, Olga; Stocker, Thomas F.; Tarasov, Pavel; Wagner, Mayke; Widmann, Martin (2008). Mid-to Late Holocene climate change: an overview. Quaternary Science Reviews, 27(19-20), pp. 1791-1828. Oxford: Pergamon 10.1016/j.quascirev.2008.06.013
Parekh, Payal; Joos, Fortunat; Müller, Simon A. (2008). A modeling assessment of the interplay between aeolian iron fluxes and iron-binding ligands in controlling carbon dioxide fluctuations during Antarctic warm events. Paleoceanography, 23(4), n/a-n/a. Washington, D.C.: American Geophysical Union 10.1029/2007PA001531
Ritz, Stefan P.; Stocker, Thomas F.; Müller, Simon A. (2008). Modeling the effect of abrupt ocean circulation change on marine reservoir age. Earth and planetary science letters, 268(1-2), pp. 202-211. Amsterdam: Elsevier 10.1016/j.epsl.2008.01.024
Siddall, Mark; Anderson, Robert F.; Winckler, Gisela; Henderson, Gideon M.; Bradtmiller, Louisa I.; McGee, David; Franzese, Allison; Stocker, Thomas F.; Müller, Simon A. (2008). Modeling the particle flux effect on distribution of 230Th in the equatorial Pacific. Paleoceanography, 23(2), n/a-n/a. Washington, D.C.: American Geophysical Union 10.1029/2007PA001556
Muscheler, Raimund; Joos, Fortunat; Beer, Jürg; Müller, Simon A.; Vonmoos, Maura; Snowball, Ian (2007). Reply to the comment by Bard et al. on “Solar activity during the last 1000 yr inferred from radionuclide records”. Quaternary Science Reviews, 26(17-18), pp. 2304-2308. Oxford: Pergamon 10.1016/j.quascirev.2007.06.014
Siddall, Mark; Stocker, Thomas F.; Henderson, Gideon M.; Joos, Fortunat; Frank, Martin; Edwards, Neil R.; Ritz, Stefan P.; Müller, Simon A. (2007). Modeling the relationship between 231Pa/230Th distribution in North Atlantic sediment and Atlantic meridional overturning circulation. Paleoceanography, 22(2) American Geophysical Union 10.1029/2006PA001358
Muscheler, Raimund; Joos, Fortunat; Müller, Simon A.; Snowball, Ian (2005). Climate: How unusual is today's solar activity. Nature, 436(7050), E3-E4. Nature Publishing Group 10.1038/nature04045
Knutti, Reto; Joos, Fortunat; Müller, Simon A.; Plattner, Gian-Kasper; Stocker, Thomas F. (2005). Probabilistic climate change projections for CO2 stabilization profiles. Geophysical Research Letters, 32(20) American Geophysical Union 10.1029/2005GL023294
Siddall, Mark; Henderson, Gideon M.; Edwards, Neil R.; Frank, Martin; Müller, Simon A.; Stocker, Thomas F.; Joos, Fortunat (2005). 231Pa/230Th fractionation by ocean transport, biogenic particle flux and particle type. Earth and planetary science letters, 237(1-2), pp. 135-155. Elsevier 10.1016/j.epsl.2005.05.031
Riggenbach, Elena; Waser, Manuel; Müller, Simon A.; Aebersold, D. M.; Giger, Roland; Elicin, Olgun (18 September 2023). Compartmentalization for oral cavity cancer: outcome of a de-escalating strategy. Strahlentherapie und Onkologie, 11(199), p. 1048. Springer
Müller, Simon A. (2007). Large-scale ocean circulation, air-sea gas exchange, and carbon isotopes in a three-dimensional, computationally efficient ocean model (Unpublished). (Dissertation, Universität Bern, Philosophisch–naturwissenschaftliche Fakultät, Physikalisches Institut, Abteilung für Klima– und Umweltphysik)