Niemann, Stefan

Shavuka, Olga; Iipumbu, Etuhole; Boois, Lorraine; Günther, Gunar; Hoddinott, Graeme; Lin, Hsien-Ho; Nepolo, Emmanuel; Niemann, Stefan; Ruswa, Nunurai; Seddon, James; Claassens, Mareli M (2024). Enhanced active case finding of drug-resistant tuberculosis in Namibia: a protocol for the hotspots, hospitals, and households (H3TB) study. BMJ open, 14(2) BMJ Publishing Group 10.1136/bmjopen-2023-082665

Zwyer, Michaela; Rutaihwa, Liliana K; Windels, Etthel; Hella, Jerry; Menardo, Fabrizio; Sasamalo, Mohamed; Sommer, Gregor; Schmülling, Lena; Borrell, Sonia; Reinhard, Miriam; Dötsch, Anna; Hiza, Hellen; Stritt, Christoph; Sikalengo, George; Fenner, Lukas; De Jong, Bouke C; Kato-Maeda, Midori; Jugheli, Levan; Ernst, Joel D; Niemann, Stefan; ... (2023). Back-to-Africa introductions of Mycobacterium tuberculosis as the main cause of tuberculosis in Dar es Salaam, Tanzania. PLoS pathogens, 19(4), e1010893. Public Library of Science 10.1371/journal.ppat.1010893

de Araujo, Leonardo; Cabibbe, Andrea Maurizio; Mhuulu, Lusia; Ruswa, Nunurai; Dreyer, Viola; Diergaardt, Azaria; Günther, Gunar; Claassens, Mareli; Gerlach, Christiane; Utpatel, Christian; Cirillo, Daniela Maria; Nepolo, Emmanuel; Niemann, Stefan (2023). Implementation of targeted next-generation sequencing for the diagnosis of drug-resistant tuberculosis in low-resource settings: a programmatic model, challenges, and initial outcomes. Frontiers in Public Health, 11, p. 1204064. Frontiers Research Foundation 10.3389/fpubh.2023.1204064

Van Wyk, Susanna S; Nliwasa, Marriott; Seddon, James A; Hoddinott, Graeme; Viljoen, Lario; Nepolo, Emmanuel; Günther, Gunar; Ruswa, Nunurai; Lin, Hsien-Ho; Niemann, Stefan; Gandhi, Neel R; Shah, N Sarita; Claassens, Mareli (2022). Case-Finding Strategies for Drug-Resistant Tuberculosis: Protocol for a Scoping Review. JMIR research protocols, 11(12), e40009. JMIR Publications 10.2196/40009

Peker, Nilay; Schuele, Leonard; Kok, Nienke; Terrazos, Miguel; Neuenschwander, Stefan M.; de Beer, Jessica; Akkerman, Onno; Peter, Silke; Ramette, Alban; Merker, Matthias; Niemann, Stefan; Couto, Natacha; Sinha, Bhanu; Rossen, John Wa (2021). Evaluation of whole-genome sequence data analysis approaches for short- and long-read sequencing of Mycobacterium tuberculosis. Microbial genomics, 7(11) Microbiology Society 10.1099/mgen.0.000695

Coscolla, Mireia; Gagneux, Sebastien; Menardo, Fabrizio; Loiseau, Chloé; Ruiz-Rodriguez, Paula; Borrell, Sonia; Otchere, Isaac Darko; Asante-Poku, Adwoa; Asare, Prince; Sánchez-Busó, Leonor; Gehre, Florian; Sanoussi, C N'Dira; Antonio, Martin; Affolabi, Dissou; Fyfe, Janet; Beckert, Patrick; Niemann, Stefan; Alabi, Abraham S; Grobusch, Martin P; Kobbe, Robin; ... (2021). Phylogenomics of Mycobacterium africanum reveals a new lineage and a complex evolutionary history. Microbial genomics, 7(2), 000477. Microbiology Society 10.1099/mgen.0.000477

Homolka, Susanne; Paulowski, Laura; Andres, Sönke; Hillemann, Doris; Jou, Ruwen; Günther, Gunar; Claassens, Mareli; Kuhns, Martin; Niemann, Stefan; Maurer, Florian P (2020). Two Pandemics, One Challenge-Leveraging Molecular Test Capacity of Tuberculosis Laboratories for Rapid COVID-19 Case-Finding. Emerging infectious diseases, 26(11), pp. 2549-2554. U.S. National Center for Infectious Diseases 10.3201/eid2611.202602

Hasse, Barbara; Hannan, Margaret; Keller, Peter M.; Maurer, Florian P; Sommerstein, Rami; Mertz, Dominik; Wagner, Dirk; Fernández-Hidalgo, Nuria; Nomura, Jim; Manfrin, Vinicio; Bettex, Dominique; Conte, Antonio Hernandez; Durante-Mangoni, Emanuele; Hing-Cheung Tang, Tommy; Stuart, Rhonda L; Lundgren, Jens; Gordon, Steve; Jarashow, M Claire; Schreiber, Peter W; Niemann, Stefan; ... (2020). International Society of Cardiovascular Infectious Diseases Guidelines for the Diagnosis, Treatment and Prevention of Disseminated Mycobacterium chimaera Infection Following Cardiac Surgery with Cardiopulmonary Bypass. The journal of hospital infection, 104(2), pp. 214-235. Elsevier 10.1016/j.jhin.2019.10.009

van Ingen, Jakko; Kohl, Thomas A; Kranzer, Katharina; Hasse, Barbara; Keller, Peter M; Katarzyna Szafrańska, Anna; Hillemann, Doris; Chand, Meera; Schreiber, Peter Werner; Sommerstein, Rami; Berger, Christoph; Genoni, Michele; Rüegg, Christian; Troillet, Nicolas; Widmer, Andreas F; Becker, Sören L; Herrmann, Mathias; Eckmanns, Tim; Haller, Sebastian; Höller, Christiane; ... (2017). Global outbreak of severe Mycobacterium chimaera disease after cardiac surgery: a molecular epidemiological study. The lancet. Infectious diseases, 17(10), pp. 1033-1041. Elsevier 10.1016/S1473-3099(17)30324-9

Stucki, David; Brites, Daniela; Jeljeli, Leïla; Coscolla, Mireia; Liu, Qingyun; Trauner, Andrej; Fenner, Lukas; Rutaihwa, Liliana; Borrell, Sonia; Luo, Tao; Gao, Qian; Kato-Maeda, Midori; Ballif, Marie; Egger, Matthias; Macedo, Rita; Mardassi, Helmi; Moreno, Milagros; Vilanova, Griselda Tudo; Fyfe, Janet; Globan, Maria; ... (2016). Mycobacterium tuberculosis lineage 4 comprises globally distributed and geographically restricted sublineages. Nature genetics, 48(12), pp. 1535-1543. Nature America 10.1038/ng.3704

Merker, Matthias; Blin, Camille; Mona, Stefano; Duforet-Frebourg, Nicolas; Lecher, Sophie; Willery, Eve; Blum, Michael G B; Rüsch-Gerdes, Sabine; Mokrousov, Igor; Aleksic, Eman; Allix-Béguec, Caroline; Antierens, Annick; Augustynowicz-Kopeć, Ewa; Ballif, Marie; Barletta, Francesca; Beck, Hans Peter; Barry, Clifton E; Bonnet, Maryline; Borroni, Emanuele; Campos-Herrero, Isolina; ... (2015). Evolutionary history and global spread of the Mycobacterium tuberculosis Beijing lineage. Nature genetics, 47(3), pp. 242-249. Nature America 10.1038/ng.3195