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Oliveira, Hinayah R; Chud, Tatiane C S; Oliveira, Gerson A; Hermisdorff, Isis C; Narayana, Saranya G; Rochus, Christina M; Butty, Adrien M; Malchiodi, Francesca; Stothard, Paul; Miglior, Filippo; Baes, Christine F; Schenkel, Flavio S (2024). Genome-wide association analyses reveals copy number variant regions associated with reproduction and disease traits in Canadian Holstein cattle. Journal of dairy science, 107(9), pp. 7052-7063. American Dairy Science Association 10.3168/jds.2023-24295
Kalbfleisch, Theodore S; McKay, Stephanie D; Murdoch, Brenda M; Adelson, David L; Almansa-Villa, Diego; Becker, Gabrielle; Beckett, Linda M; Benítez-Galeano, María José; Biase, Fernando; Casey, Theresa; Chuong, Edward; Clark, Emily; Clarke, Shannon; Cockett, Noelle; Couldrey, Christine; Davis, Brian W; Elsik, Christine G; Faraut, Thomas; Gao, Yahui; Genet, Carine; ... (2024). The Ruminant Telomere-to-Telomere (RT2T) Consortium. Nature genetics, 56(8), pp. 1566-1573. Nature America 10.1038/s41588-024-01835-2
van Staaveren, Nienke; Oliveira, Hinayah R; Houlahan, Kerry; Chud, Tatiane C S; Oliveira, Gerson A; Hailemariam, Dagnachew; Kistemaker, Gerrit; Miglior, Filippo; Plastow, Graham; Schenkel, Flavio S; Cerri, Ronaldo; Sirard, Marc-André; Stothard, Paul; Pryce, Jennie; Butty, Adrien; Stratz, Patrick; Abdalla, Emhimad A E; Segelke, Dierck; Stamer, Eckhard; Thaller, Georg; ... (2024). The Resilient Dairy Genome Project - a general overview of methods and objectives related to feed efficiency and methane emissions. Journal of dairy science, 107(3), pp. 1510-1522. Elsevier 10.3168/jds.2022-22951
Shadpour, Saeed; Chud, Tatiane C S; Hailemariam, Dagnachew; Oliveira, Hinayah R; Plastow, Graham; Stothard, Paul; Lassen, Jan; Baldwin, Ransom; Miglior, Filippo; Baes, Christine F; Tulpan, Dan; Schenkel, Flavio S (2022). Predicting dry matter intake in Canadian Holstein dairy cattle using milk mid-infrared reflectance spectroscopy and other commonly available predictors via artificial neural networks. Journal of dairy science, 105(10), pp. 8257-8271. American Dairy Science Association 10.3168/jds.2021-21297
Bolormaa, Sunduimijid; MacLeod, Iona M; Khansefid, Majid; Marett, Leah C; Wales, William J; Miglior, Filippo; Baes, Christine F; Schenkel, Flavio S; Connor, Erin E; Manzanilla-Pech, Coralia I V; Stothard, Paul; Herman, Emily; Nieuwhof, Gert J; Goddard, Michael E; Pryce, Jennie E (2022). Sharing of either phenotypes or genetic variants can increase the accuracy of genomic prediction of feed efficiency. Genetics, selection, evolution, 54(1), p. 60. BioMed Central 10.1186/s12711-022-00749-z
Butty, Adrien M; Chud, Tatiane C S; Cardoso, Diercles F; Lopes, Lucas S F; Miglior, Filippo; Schenkel, Flavio S; Cánovas, Angela; Häfliger, Irene M.; Drögemüller, Cord; Stothard, Paul; Malchiodi, Francesca; Baes, Christine F. (2021). Genome-wide association study between copy number variants and hoof health traits in Holstein dairy cattle. Journal of dairy science, 104(7), pp. 8050-8061. American Dairy Science Association 10.3168/jds.2020-19879
Butty, Adrien M.; Chud, Tatiane C. S.; Miglior, Filippo; Schenkel, Flavio S.; Kommadath, Arun; Krivushin, Kirill; Grant, Jason R.; Häfliger, Irene M.; Drögemüller, Cord; Cánovas, Angela; Stothard, Paul; Baes, Christine F. (2020). High confidence copy number variants identified in Holstein dairy cattle from whole genome sequence and genotype array data. Scientific reports, 10(1), p. 8044. Springer Nature 10.1038/s41598-020-64680-3
Kommadath, Arun; Grant, Jason R; Krivushin, Kirill; Butty, Adrien M; Baes, Christine Francoise; Carthy, Tara R; Berry, Donagh P; Stothard, Paul (2019). A large interactive visual database of copy number variants discovered in taurine cattle. GigaScience, 8(6) Oxford University Press 10.1093/gigascience/giz073
Butty, Adrien M.; Sargolzaei, Mehdi; Miglior, Filippo; Stothard, Paul; Schenkel, Flavio S.; Gredler-Grandl, Birgit; Baes, Christine Francoise (2019). Optimizing Selection of the Reference Population for Genotype Imputation From Array to Sequence Variants. Frontiers in genetics, 10(510), p. 510. Frontiers Media SA 10.3389/fgene.2019.00510
Bouwman, Aniek C.; Daetwyler, Hans D.; Chamberlain, Amanda J.; Ponce, Carla Hurtado; Sargolzaei, Mehdi; Schenkel, Flavio S.; Sahana, Goutam; Govignon-Gion, Armelle; Boitard, Simon; Dolezal, Marlies; Pausch, Hubert; Brøndum, Rasmus F.; Bowman, Phil J.; Thomsen, Bo; Guldbrandtsen, Bernt; Lund, Mogens S.; Servin, Bertrand; Garrick, Dorian J.; Reecy, James; Vilkki, Johanna; ... (2018). Meta-analysis of genome-wide association studies for cattle stature identifies common genes that regulate body size in mammals. Nature genetics, 50(3), pp. 362-367. Nature America 10.1038/s41588-018-0056-5
