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Ovchinnikova, Katja; Born, Jannis; Chouvardas, Panagiotis; Rapsomaniki, Marianna; Kruithof-de Julio, Marianna (2024). Overcoming limitations in current measures of drug response may enable AI-driven precision oncology. NPJ precision oncology, 8(95) Springer Nature 10.1038/s41698-024-00583-0
Dhaka, Bhavya; Zimmerli, Marc; Hanhart, Daniel; Moser, Mario B; Guillen-Ramirez, Hugo; Mishra, Sanat; Esposito, Roberta; Polidori, Taisia; Widmer, Maro; García-Pérez, Raquel; Kruithof-de Julio, Marianna; Pervouchine, Dmitri; Melé, Marta; Chouvardas, Panagiotis; Johnson, Rory (2024). Functional identification of cis-regulatory long noncoding RNAs at controlled false discovery rates. Nucleic acids research, 52(6), pp. 2821-2835. Oxford University Press 10.1093/nar/gkae075
Hanhart, Daniel; Gossi, Federico; Rapsomaniki, Maria Anna; Kruithof-de Julio, Marianna; Chouvardas, Panagiotis (2024). ScLinear predicts protein abundance at single-cell resolution. Communications biology, 7(267) Springer Nature 10.1038/s42003-024-05958-4
Plaisance, Isabelle; Chouvardas, Panagiotis; Sun, Yuliangzi; Nemir, Mohamed; Aghagolzadeh, Parisa; Aminfar, Farhang; Shen, Sophie; Shim, Woo Jun; Rochais, Francesca; Johnson, Rory; Palpant, Nathan; Pedrazzini, Thierry (2023). A transposable element into the human long noncoding RNA CARMEN is a switch for cardiac precursor cell specification. Cardiovascular research, 119(6), pp. 1361-1376. Oxford University Press 10.1093/cvr/cvac191
Minoli, Martina; Cantore, Thomas; Hanhart, Daniel; Kiener, Mirjam; Fedrizzi, Tarcisio; La Manna, Federico; Karkampouna, Sofia; Chouvardas, Panagiotis; Genitsch, Vera; Rodriguez-Calero, Antonio; Compérat, Eva; Klima, Irena; Gasperini, Paola; Kiss, Bernhard; Seiler, Roland; Demichelis, Francesca; Thalmann, George N; Kruithof-de Julio, Marianna (2023). Bladder cancer organoids as a functional system to model different disease stages and therapy response. Nature Communications, 14(1), p. 2214. Springer Nature 10.1038/s41467-023-37696-2
