SPLATCHE3: simulation of serial genetic data under spatially explicit evolutionary scenarios including long-distance dispersal

Currat, Mathias; Arenas, Miguel; Quilodràn, Claudio S.; Excoffier, Laurent; Ray, Nicolas (2019). SPLATCHE3: simulation of serial genetic data under spatially explicit evolutionary scenarios including long-distance dispersal. Bioinformatics, 35(21), pp. 4480-4483. Oxford University Press 10.1093/bioinformatics/btz311

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Summary: SPLATCHE3 simulates genetic data under a variety of spatially explicit evolutionary scenarios, extending previous versions of the framework. The new capabilities include longdistance migration, spatially and temporally heterogeneous short-scale migrations, alternative hybridization models, simulation of serial samples of genetic data and a large variety of DNA mutation models. These implementations have been applied independently to various studies, but grouped together in the current version. Availability and implementation: SPLATCHE3 is written in Cþþ and is freely available for noncommercial use from the website http://www.splatche.com/splatche3. It includes console versions for Linux, MacOs and Windows and a user-friendly GUI for Windows, as well as detailed documentation and ready-to-use examples. Contact: mathias.currat@unige.ch

Item Type:

Journal Article (Original Article)

Division/Institute:

08 Faculty of Science > Department of Biology > Institute of Ecology and Evolution (IEE)

UniBE Contributor:

Excoffier, Laurent

Subjects:

500 Science > 570 Life sciences; biology

ISSN:

1367-4803

Publisher:

Oxford University Press

Language:

English

Submitter:

Susanne Holenstein

Date Deposited:

14 Oct 2019 16:14

Last Modified:

31 Oct 2019 01:32

Publisher DOI:

10.1093/bioinformatics/btz311

BORIS DOI:

10.7892/boris.133890

URI:

https://boris.unibe.ch/id/eprint/133890

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