SPLATCHE3: simulation of serial genetic data under spatially explicit evolutionary scenarios including long-distance dispersal

Currat, Mathias; Arenas, Miguel; Quilodràn, Claudio S.; Excoffier, Laurent; Ray, Nicolas (2019). SPLATCHE3: simulation of serial genetic data under spatially explicit evolutionary scenarios including long-distance dispersal. Bioinformatics, 35(21), pp. 4480-4483. Oxford University Press 10.1093/bioinformatics/btz311

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Summary: SPLATCHE3 simulates genetic data under a variety of spatially explicit evolutionary scenarios, extending previous versions of the framework. The new capabilities include longdistance migration, spatially and temporally heterogeneous short-scale migrations, alternative hybridization models, simulation of serial samples of genetic data and a large variety of DNA mutation models. These implementations have been applied independently to various studies, but grouped together in the current version. Availability and implementation: SPLATCHE3 is written in Cþþ and is freely available for noncommercial use from the website http://www.splatche.com/splatche3. It includes console versions for Linux, MacOs and Windows and a user-friendly GUI for Windows, as well as detailed documentation and ready-to-use examples. Contact: mathias.currat@unige.ch

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