Dettwiler, Ines; Troell, Karin; Robinson, Guy; Chalmers, Rachel M; Basso, Walter; Rentería-Solís, Zaida Melina; Daugschies, Arwid; Mühlethaler, Konrad; Dale, Mariko I; Basapathi, Jyothi; Ruf, Marie-Thérèse; Poppert, Sven; Meylan, Mireille; Olias, Philipp (2022). TIDE analysis of Cryptosporidium infections by gp60 typing reveals obscured mixed infections. The journal of infectious diseases, 225(4), pp. 686-695. Oxford University Press 10.1093/infdis/jiab417
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BACKGROUND
Cryptosporidiosis is a parasitic disease associated with potentially fatal diarrhea. The most used method in Cryptosporidium subtyping is based on the glycoprotein gene gp60. Each infection can represent a parasite population, and it is important to investigate the influence on transmission and virulence, as well as any impact on public health investigations. However, an easy-to-use method for detection is lacking.
METHODS
Here we report on the use of the bioinformatic program TIDE for deconvolution of gp60 chromatograms. A combination of single oocyst analysis and cloning successfully confirmed the within-sample parasite population diversity. Retrospective sample analysis was conducted on archived chromatograms.
RESULTS
For C. parvum, 8.6% multi-strain infections (13 out of 152) obscured by currently used consensus base calling were detected. Importantly, we show that single oocysts can harbor a mixed population of sporozoites. We also identified a striking dominance of unappreciated polymerase stutter artefacts in all 218 chromatograms analyzed, challenging the uncritical use of gp60 typing.
DISCUSSION
We demonstrate the value of a new easy-to-use analytical procedure for critical characterization of C. parvum and C. hominis in epidemiological investigations, also applicable in retrospect. Our findings illuminate the hidden parasite diversity with important implications for tracing zoonotic and person-to-person transmissions.
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