04 Faculty of Medicine > Service Sector > Institute for Infectious Diseases

2024

Zbinden, Andrea; Seth-Smith, Helena M B; Beltrami, Vanessa; Mancini, Stefano; Droz, Sara; Bürgi, Urs; Melillo, David; Schuurmans, Mace M; Schwizer, Bernhard; Schmid, Iris; Casaulta, Carmen; Barben, Jürg; Mueller, Nicolas J; Imkamp, Frank (2024). Burkholderia cenocepacia ST-250 in cystic fibrosis patients in Switzerland: Genomic investigation of transmission routes. Diagnostic microbiology and infectious disease, 110(2), p. 116429. Elsevier 10.1016/j.diagmicrobio.2024.116429

Lallemand, Séverine; Oyhenart, Jorge; Valot, Benoit; Borne, Romain; Bohard, Louis; Umhang, Gérald; Karamon, Jacek; Konyaev, Sergey; Rönnberg, Caroline; Gottstein, Bruno; Weil-Verhoeven, Delphine; Richou, Carine; Bresson-Hadni, Solange; Millon, Laurence; Bellanger, Anne-Pauline; Knapp, Jenny (2024). Challenging the phylogenetic relationships among Echinococcus multilocularis isolates from main endemic areas. International journal for parasitology, 54(11), pp. 569-582. Elsevier 10.1016/j.ijpara.2024.05.004

Aldeia, Claudia; Campos-Madueno, Edgar I; Endimiani, Andrea (2024). Genomic insights into Leminorella grimontii and its chromosomal class A GRI β-lactamase. European journal of clinical microbiology & infectious diseases, 43(9), pp. 1855-1860. Springer 10.1007/s10096-024-04888-7

Abela, Irene A; Hauser, Anthony; Schwarzmüller, Magdalena; Pasin, Chloé; Kusejko, Katharina; Epp, Selina; Cavassini, Matthias; Battegay, Manuel; Rauch, Andri; Calmy, Alexandra; Notter, Julia; Bernasconi, Enos; Fux, Christoph A; Leuzinger, Karoline; Perreau, Matthieu; Ramette, Alban; Gottschalk, Jochen; Schindler, Eméry; Wepf, Alexander; Marconato, Maddalena; ... (2024). Deciphering factors linked with reduced SARS-CoV-2 susceptibility in the Swiss HIV Cohort Study. The journal of infectious diseases, 230(2), e292-e304. Oxford University Press 10.1093/infdis/jiae002

Thönen, Lisa; Kreuzer, Marco; Pestalozzi, Christine; Florean, Matilde; Mateo, Pierre; Züst, Tobias; Wei, Anlun; Giroud, Caitlin; Rouyer, Liza; Gfeller, Valentin; Notter, Matheus D; Knoch, Eva; Hapfelmeier, Siegfried; Becker, Claude; Schandry, Niklas; Robert, Christelle A M; Köllner, Tobias G; Bruggmann, Rémy; Erb, Matthias and Schlaeppi, Klaus (2024). The lactonase BxdA mediates metabolic specialisation of maize root bacteria to benzoxazinoids. Nature communications, 15(6535) Nature Publishing Group 10.1038/s41467-024-49643-w

Hermann, Laura; Schöning, Verena; Dräger, Sarah; Rentsch, Katharina; Moser, Stephan; Gürtler, Nicolas; Sendi, Parham; Osthoff, Michael; Hammann, Felix (2024). Population pharmacokinetics of flucloxacillin as intermittent bolus infusion in patients with Staphylococcus aureus bloodstream infection. The journal of antimicrobial chemotherapy, 79(8), pp. 2031-2039. Oxford University Press 10.1093/jac/dkae207

Vico-Oton, Eduard; Volet, Colin; Jacquemin, Nicolas; Dong, Yuan; Hapfelmeier, Siegfried; Meibom, Karin Lederballe; Bernier-Latmani, Rizlan (2024). Strain-dependent induction of primary bile acid 7-dehydroxylation by cholic acid. BMC microbiology, 24(286) BioMed Central 10.1186/s12866-024-03433-y

Wirdnam, Corina D; Warmus, Dawid; Faso, Carmen (2024). Nourseothricin as a novel drug for selection of transgenic Giardia lamblia. International journal for parasitology. Drugs and drug resistance, 25(100543), p. 100543. Elsevier 10.1016/j.ijpddr.2024.100543

Lopez-Labrador, F Xavier; Huber, Michael; Sidorov, Igor A; Brown, Julianne R; Cuypers, Lize; Laenen, Lies; Vanmechelen, Bert; Maes, Piet; Fischer, Nicole; Pichler, Ian; Storey, Nathaniel; Atkinson, Laura; Schmutz, Stefan; Kufner, Verena; van Boheemen, Sander; Mulders, Claudia E; Grundhoff, Adam; Blümke, Patrick; Robitaille, Alexis; Cinek, Ondrej; ... (2024). Multicenter benchmarking of short and long read wet lab protocols for clinical viral metagenomics. Journal of clinical virology, 173(105695), p. 105695. Elsevier 10.1016/j.jcv.2024.105695

Damonti, Lauro; Gasser, Michael; Kronenberg, Andreas; Buetti, Niccolò (2024). Epidemiology of bloodstream infections caused by extended-spectrum cephalosporin-resistant Escherichia coli and Klebsiella pneumoniae in Switzerland, 2015-2022: secular trends and association with the COVID-19 pandemic. The journal of hospital infection, 150, pp. 145-152. Elsevier 10.1016/j.jhin.2024.05.013

Boehm, Erik; Summermatter, Kathrin; Kaiser, Laurent (2024). Orthopox viruses: is the threat growing? Clinical microbiology and infection, 30(7), pp. 883-887. Elsevier 10.1016/j.cmi.2024.02.011

Marchionatti, Emma; Kittl, Sonja; Sendi, Parham; Perreten, Vincent (2024). Whole genome-based antimicrobial resistance, virulence, and phylogenetic characteristics of Trueperella pyogenes clinical isolates from humans and animals. Veterinary microbiology, 294, p. 110102. Elsevier 10.1016/j.vetmic.2024.110102

Kundlacz, Cindy; Aldeia, Claudia; Eddoubaji, Yasmine; Campos-Madueno, Edgar I; Endimiani, Andrea (2024). Complete genome sequence of Pseudomonas canadensis strain Pcan-CK-23 isolated from Zophobas morio larvae. Microbiology resource announcements, 13(6), e0002324. American Society for Microbiology 10.1128/mra.00023-24

Vergidis, Paschalis; Sendi, Parham; Alkhateeb, Hassan; Nguyen, M Hong (2024). How Do I Manage Refractory Invasive Pulmonary Aspergillosis. Clinical microbiology and infection, 30(6), pp. 755-761. Elsevier 10.1016/j.cmi.2024.01.015

Banholzer, Nicolas; Bittel, Pascal; Jent, Philipp; Furrer, Lavinia; Zürcher, Kathrin; Egger, Matthias; Hascher, Tina; Fenner, Lukas (2024). Molecular detection of SARS-CoV-2 and other respiratory viruses in saliva and classroom air: a two winters tale. Clinical microbiology and infection, 30(6), 829.e1-829.e4. Elsevier 10.1016/j.cmi.2024.03.002

Lux, Janine; Sánchez García, Lucía; Chaparro Fernández, Patricia; Laloli, Laura; Licheri, Manon F.; Galley, Clement; Hermans, Peter W.M.; Croucher, Nicholas J.; Veening, Jan-Willem; Dijkman, Ronald; Straume, Daniel; Hathaway, Lucy J. (2024). AmiA and AliA peptide ligands, found in Klebsiella pneumoniae, are imported into pneumococci and alter the transcriptome. Scientific reports, 14 Springer Nature 10.1038/s41598-024-63217-2

Cisco, Giulio; Meier, Armando N; Senn, Nicolas; Mueller, Yolanda; Kronenberg, Andreas; Locatelli, Isabella; Knüsli, José; Lhopitallier, Loïc; Boillat-Blanco, Noemie; Marti, Joachim (2024). Cost-effectiveness analysis of procalcitonin and lung ultrasonography guided antibiotic prescriptions in primary care. (In Press). The European journal of health economics Springer 10.1007/s10198-024-01694-y

Wegner, Fanny; Cabrera-Gil, Blanca; Tanguy, Araud; Beckmann, Christiane; Beerenwinkel, Niko; Bertelli, Claire; Carrara, Matteo; Cerutti, Lorenzo; Chen, Chaoran; Cordey, Samuel; Dumoulin, Alexis; du Plessis, Louis; Friedli, Marc; Gerth, Yannick; Greub, Gilbert; Härri, Adrian; Hirsch, Hans; Howald, Cedric; Huber, Michael; Imhof, Alexander; ... (2024). How much should we sequence? An analysis of the Swiss SARS-CoV-2 surveillance effort. Microbiology spectrum, 12(5), e0362823. American Society for Microbiology 10.1128/spectrum.03628-23

Ehrhard, Simone; Herren, Lukas; Ricklin, Meret E; Suter-Riniker, Franziska; Exadaktylos, Aristomenis K; Hautz, Wolf; Müller, Martin; Jent, Philipp (2024). Do all Emergency Room Patients With Influenza-like Symptoms Need Blood Cultures? A Retrospective Cohort Study of 2 Annual Influenza Seasons. Open Forum Infectious Diseases, 11(5) Oxford University Press 10.1093/ofid/ofae242

Muehlberg, Leonora; Pabst, Thomas; Largiadèr, Carlo; Aebi, Yolanda; Hayoz, Michael; Mühlethaler, Konrad; Zimmerli, Stefan; Hirzel, Cédric (2024). Evaluation of Posaconazole Serum Concentrations Achieved With Delayed-release Tablets and Oral Suspension in Patients Undergoing Intensive Chemotherapy for Acute Myeloid Leukemia and Myelodysplastic Syndrome. Open Forum Infectious Diseases, 11(5) Oxford University Press 10.1093/ofid/ofae263

Begré, Lorin; Boyd, Anders; Plissonnier, Marie-Laure; Testoni, Barbara; Salazar-Vizcaya, Luisa; Suter-Riniker, Franziska; Scholtès, Caroline; Béguelin, Charles; Rockstroh, Jürgen K; Günthard, Huldrych F; Calmy, Alexandra; Cavassini, Matthias; Hirsch, Hans H; Schmid, Patrick; Bernasconi, Enos; Levrero, Massimo; Wandeler, Gilles; Zoulim, Fabien; Rauch, Andri (2024). Circulating HBV RNA and hepatitis B core-related antigen trajectories in persons with HIV/HBV coinfection and HBsAg loss on tenofovir therapy. (In Press). The journal of infectious diseases Oxford University Press 10.1093/infdis/jiae189

Lux, Janine; Portmann, Hannah; Sánchez García, Lucia; Erhardt, Maria; Holivololona, Lalaina; Laloli, Laura; Licheri, Manon F; Gallay, Clement; Hoepner, Robert; Croucher, Nicholas J; Straume, Daniel; Veening, Jan-Willem; Dijkman, Ronald; Heller, Manfred; Grandgirard, Denis; Leib, Stephen L; Hathaway, Lucy J (2024). Klebsiella pneumoniae peptide hijacks a Streptococcus pneumoniae permease to subvert pneumococcal growth and colonization. Communications biology, 7(425) Springer Nature 10.1038/s42003-024-06113-9

Thormann, Wolfgang; Mosher, Richard A (2024). Mobilization in two-step capillary isoelectric focusing: Concepts assessed by computer simulation. Electrophoresis, 45(7-8), pp. 618-638. Wiley-VCH 10.1002/elps.202300218

Oliver, Antonio; Rojo-Molinero, Estrella; Arca-Suarez, Jorge; Beşli, Yeşim; Bogaerts, Pierre; Cantón, Rafael; Cimen, Cansu; Croughs, Peter D; Denis, Olivier; Giske, Christian G; Graells, Tíscar; Daniel Huang, Te-Din; Iorga, Bogdan I; Karatuna, Onur; Kocsis, Béla; Kronenberg, Andreas; López-Causapé, Carla; Malhotra-Kumar, Surbhi; Martínez, Luis Martínez; Mazzariol, Annarita; ... (2024). Pseudomonas aeruginosa antimicrobial susceptibility profiles, resistance mechanisms and international clonal lineages: update from ESGARS-ESCMID/ISARPAE Group. Clinical microbiology and infection, 30(4), pp. 469-480. Elsevier 10.1016/j.cmi.2023.12.026

Santoro, Azzurra; Santolamazza, Federica; Cacciò, Simone M; La Rosa, Giuseppe; Antolová, Daniela; Auer, Herbert; Bagrade, Guna; Bandelj, Petra; Basso, Walter; Beck, Relja; Citterio, Carlo V; Davidson, Rebecca K; Deksne, Gunita; Frey, Caroline F; Fuglei, Eva; Glawischnig, Walter; Gottstein, Bruno; Harna, Jiří; Huus Petersen, Heidi; Karamon, Jacek; ... (2024). Mitochondrial genetic diversity and phylogenetic relationships of Echinococcus multilocularis in Europe. International journal for parasitology, 54(5), pp. 233-245. Elsevier 10.1016/j.ijpara.2024.01.003

Banholzer, Nicolas; Jent, Philipp; Bittel, Pascal; Zürcher, Kathrin; Furrer, Lavinia; Bertschinger, Simon; Weingartner, Ernest; Ramette, Alban; Egger, Matthias; Hascher, Tina; Fenner, Lukas (2024). Air Cleaners and Respiratory Infections in Schools: A Modeling Study Based on Epidemiologic, Environmental, and Molecular Data. Open Forum Infectious Diseases, 11(4), ofae169. Oxford University Press 10.1093/ofid/ofae169

Pargätzi, Gwenda; Bergadano, Alessandra; Spadavecchia, Claudia; Theurillat, Regula; Thormann, Wolfgang; Levionnois, Olivier L (2024). Stereoselective Pharmacokinetics of Ketamine Administered at a Low Dose in Awake Dogs. Animals, 14(7) MDPI 10.3390/ani14071012

Kundlacz, Cindy; Aldeia, Claudia; Eddoubaji, Yasmine; Campos-Madueno, Edgar I; Endimiani, Andrea (2024). A new OCH β-lactamase from a Brucella pseudintermedia (Ochrobactrum intermedium) strain isolated from Zophobas morio larvae. Journal of global antimicrobial resistance, 36, pp. 65-69. Elsevier 10.1016/j.jgar.2023.12.012

Manuel, Oriol; Laager, Mirjam; Hirzel, Cédric; Neofytos, Dionysios; Walti, Laura N; Hoenger, Gideon; Binet, Isabelle; Schnyder, Aurelia; Stampf, Susanne; Koller, Michael; Mombelli, Matteo; Kim, Min Jeong; Hoffmann, Matthias; Koenig, Katrin; Hess, Christoph; Burgener, Anne-Valérie; Cippà, Pietro E; Hübel, Kerstin; Mueller, Thomas F; Sidler, Daniel; ... (2024). Immune monitoring-guided vs fixed duration of antiviral prophylaxis against cytomegalovirus in solid-organ transplant recipients. A Multicenter, Randomized Clinical Trial. Clinical infectious diseases, 78(2), pp. 312-323. Oxford University Press 10.1093/cid/ciad575

Begré, Lorin; Boyd, Anders; Salazar-Vizcaya, Luisa; Suter, Franziska; Béguelin, Charles; Rockstroh, Jürgen K; Günthard, Huldrych F; Calmy, Alexandra; Cavassini, Matthias; Stöckle, Marcel; Schmid, Patrick; Bernasconi, Enos; Levrero, Massimo; Zoulim, Fabien; Wandeler, Gilles; Rauch, Andri (2024). Long-term quantitative hepatitis B surface antigen (HBsAg) trajectories in persons with and without HBsAg loss on tenofovir-containing antiretroviral therapy. HIV medicine, 25(2), pp. 291-298. Wiley 10.1111/hiv.13561

Gloor, Severin; Jiang, Wanjie; Maurer, Martin H; Gottstein, Bruno; Oberli, Alexander Oliver; Hagemann, Jürgen B; Hotz, Julian F; Candinas, Daniel; Lachenmayer, Anja; Grüner, Beate; Beldi, Guido (2024). The trajectory of anti-recEm18 antibody levels determines follow-up after curative resection of hepatic alveolar echinococcosis. HPB : the official journal of the International Hepato Pancreato Biliary Association, 26(2), pp. 224-233. Elsevier 10.1016/j.hpb.2023.10.007

Blacksell, Stuart D; Dhawan, Sandhya; Kusumoto, Marina; Le, Khanh K; Summermatter, Kathrin; O'Keefe, Joseph; Kozlovac, Joseph P; Almuhairi, Salama S; Sendow, Indrawati; Scheel, Christina M; Ahumibe, Anthony; Masuku, Zibusiso M; Bennett, Allan M; Kojima, Kazunobu; Harper, David R; Hamilton, Keith (2024). Laboratory-acquired infections and pathogen escapes worldwide between 2000 and 2021: a scoping review. The Lancet Microbe, 5(2), e194-e202. Elsevier 10.1016/S2666-5247(23)00319-1

El Zein, Said; Berbari, Elie F; Passerini, Matteo; Petri, Francesco; Maamari, Julian; Murad, M Hassan; Sendi, Parham; Tande, Aaron J (2024). Rifampin Based Therapy for Patients with Staphylococcus aureus Native Vertebral Osteomyelitis: A Systematic Review and Meta-Analysis. Clinical infectious diseases, 78(1), pp. 40-47. Oxford University Press 10.1093/cid/ciad560

Manna, Sam; Werren, Joel P; Ortika, Belinda D; Bellich, Barbara; Pell, Casey L; Nikolaou, Elissavet; Gjuroski, Ilche; Lo, Stephanie; Hinds, Jason; Tundev, Odgerel; Dunne, Eileen M; Gessner, Bradford D; Bentley, Stephen D; Russell, Fiona M; Mulholland, E Kim; Mungun, Tuya; von Mollendorf, Claire; Licciardi, Paul V; Cescutti, Paola; Ravenscroft, Neil; ... (2024). Streptococcus pneumoniae serotype 33G: genetic, serological, and structural analysis of a new capsule type. Microbiology spectrum, 12(1), e0357923. American Society for Microbiology 10.1128/spectrum.03579-23

Terrazos Miani, Miguel A; Borcard, Loïc; Gempeler, Sonja; Baumann, Christian; Bittel, Pascal; Leib, Stephen L; Neuenschwander, Stefan; Ramette, Alban Nicolas (2024). NASCarD (Nanopore Adaptive Sampling with Carrier DNA): A Rapid, PCR-Free Method for SARS-CoV-2 Whole-Genome Sequencing in Clinical Samples. Pathogens, 13(1) MDPI AG 10.3390/pathogens13010061

Bai, Xiaopeng; De Palma, Giada; Boschetti, Elisa; Nishihara, Yuichiro; Lu, Jun; Shimbori, Chiko; Costanzini, Anna; Saqib, Zarwa; Kraimi, Narjis; Sidani, Sacha; Hapfelmeier, Siegfried; Macpherson, Andrew J; Verdu, Elena F; De Giorgio, Roberto; Collins, Stephen M; Bercik, Premysl (2024). Vasoactive intestinal polypeptide plays a key role in the microbial-neuroimmune control of intestinal motility. Cellular and molecular gastroenterology and hepatology, 17(3), pp. 383-398. Elsevier 10.1016/j.jcmgh.2023.11.012

Abbuehl, Lena S; Branca, Mattia; Ungureanu, Anamaria; Federspiel, Andrea; Leib, Stephen L; Bassetti, Claudio L. A.; Hakim, Arsany; Dietmann, Anelia (2024). Magnetic resonance imaging in acute meningoencephalitis of viral and unknown origin: frequent findings and prognostic potential. Frontiers in neurology, 15 Frontiers Media S.A. 10.3389/fneur.2024.1359437

Kronenberg, Andreas; Gasser, Michael; Plüss-Suard, Catherine; Friedli, Olivier; Leib, Stephen (2024). Für einen besseren Umgang mit Antibiotika. Schweizerische Ärztezeitung, 105(04), pp. 29-33. EMH Schweizerischer Ärzteverlag AG 10.4414/saez.2024.1288111951

Eddoubaji, Yasmine; Aldeia, Claudia; Campos-Madueno, Edgar I.; Moser, Aline I.; Kundlacz, Cindy; Perreten, Vincent; Hilty, Markus; Endimiani, Andrea (2024). A new in vivo model of intestinal colonization using Zophobas morio larvae: testing hyperepidemic ESBL- and carbapenemase-producing Escherichia coli clones. Frontiers in Microbiology, 15 Frontiers 10.3389/fmicb.2024.1381051

Kuenzli, Andrea B; Müller, Mandy D; Z'Graggen, Werner J; Walti, Laura N; Martin, Yonas; Lazarevic, Vladimir; Schrenzel, Jacques; Oberli, Alexander (2024). Case report: Chronic Candida albicans meningitis: a rare entity diagnosed by metagenomic next-generation sequencing. Frontiers in cellular and infection microbiology, 14(1322847) Frontiers 10.3389/fcimb.2024.1322847

Endimiani, Andrea (2024). When to suspect hypervirulent Klebsiella pneumoniae: the role of laboratory diagnostics (Unpublished). In: ESCMID Global. Barcelona. 28-04-2024.

El Zein, Said; Berbari, Elie F; LeMahieu, Allison M; Jagtiani, Anil; Sendi, Parham; Virk, Abinash; Morrey, Mark E; Tande, Aaron J (2024). Optimal antibiotics duration following surgical management of septic olecranon bursitis: a 12-year retrospective analysis. Journal of bone and joint infection, 9(2), pp. 107-115. Ivyspring International Publisher 10.5194/jbji-9-107-2024

Zeeb, Marius; Pasin, Chloé; Cavassini, Matthias; Bieler-Aeschlimann, Mélanie; Frischknecht, Paul; Kusejko, Katharina; Fellay, Jacques; Blanquart, François; Metzner, Karin J; Neumann, Kathrin; Jörimann, Lisa; Tschumi, Jasmin; Bernasconi, Enos; Huber, Michael; Kovari, Helen; Leuzinger, Karoline; Notter, Julia; Perreau, Matthieu; Rauch, Andri; Ramette, Alban; ... (2024). Self-reported neurocognitive complaints in the Swiss HIV Cohort Study: a viral genome-wide association study. Brain Communications, 6(4) Oxford University Press 10.1093/braincomms/fcae188

Jetishi, Clirim; Balmer, Erina A; Berger, Bianca M; Faso, Carmen; Ochsenreiter, Torsten (2024). Expansion of metabolically labelled endocytic organelles and cytoskeletal cell structures in Giardia lamblia using optimised U-ExM protocols. Microbial cell, 11, pp. 198-206. Shared Science Publishers OG 10.15698/mic2024.06.825

Schwitter, Janine; Branca, Mattia; Bicvic, Antonela; Abbühl, Lena S.; Suter-Riniker, Franziska; Leib, Stephen L.; Dietmann, Anelia (2024). Long-term sequelae after viral meningitis and meningoencephalitis are frequent, even in mildly affected patients, a prospective observational study. Frontiers in neurology, 15 Frontiers Media S.A. 10.3389/fneur.2024.1411860

Reinert, Noémie; Wetzel, Katinka; Franzeck, Fabian; Morgenstern, Mario; Aschwanden, Markus; Wolff, Thomas; Clauss, Martin; Sendi, Parham (2024). What is the agreement between principles and practice of antibiotic stewardship in the management of diabetic foot infection: an in-hospital quality control study. Journal of bone and joint infection, 9(3), pp. 183-190. Copernicus 10.5194/jbji-9-183-2024

2023

Banholzer, Nicolas; Jent, Philipp; Bittel, Pascal; Zürcher, Kathrin; Furrer, Lavinia; Bertschinger, Simon; Weingartner, Ernest; Ramette, Alban; Egger, Matthias; Hascher, Tina; Fenner, Lukas (30 December 2023). Air cleaners and respiratory infections in schools: A modeling study using epidemiological, environmental, and molecular data. medRxiv 10.1101/2023.12.29.23300635

Mostacci, Nadja; Wüthrich, Tsering Monika; Siegwald, Léa; Kieser, Silas; Steinberg, Ruth; Sakwinska, Olga; Latzin, Philipp; Korten, Insa; Hilty, Markus (2023). Informed interpretation of metagenomic data by StrainPhlAn enables strain retention analyses of the upper airway microbiome. mSystems, 8(6), e0072423. American Society for Microbiology 10.1128/msystems.00724-23

Burz, Sebastian Dan; Causevic, Senka; Dal Co, Alma; Dmitrijeva, Marija; Engel, Philipp; Garrido-Sanz, Daniel; Greub, Gilbert; Hapfelmeier, Siegfried; Hardt, Wolf-Dietrich; Hatzimanikatis, Vassily; Heiman, Clara Margot; Herzog, Mathias Klaus-Maria; Hockenberry, Alyson; Keel, Christoph; Keppler, Andreas; Lee, Soon-Jae; Luneau, Julien; Malfertheiner, Lukas; Mitri, Sara; Ngyuen, Bidong; ... (2023). From microbiome composition to functional engineering, one step at a time. Microbiology and molecular biology reviews, 87(4), e0006323. American Society for Microbiology 10.1128/mmbr.00063-23

Probst, Lukas; Laloli, Laura; Licheri, Manon Flore; Licheri, Matthias; Gultom, Mitra; Holwerda, Melle; V'kovski, Philip; Dijkman, Ronald (2023). Generation and Characterization of an Influenza D Reporter Virus. Viruses, 15(12), p. 2444. MDPI 10.3390/v15122444

Bugnon, Quentin; Melendez, Camilo; Desiatkina, Oksana; Fayolle de Chaptes, Louis; Holzer, Isabelle; Păunescu, Emilia; Hilty, Markus; Furrer, Julien (2023). In vitro antibacterial activity of dinuclear thiolato-bridged ruthenium(II)-arene compounds. Microbiology spectrum, 11(6), e0095423. American Society for Microbiology 10.1128/spectrum.00954-23

Tandon, Disha; Dong, Yuan; Hapfelmeier, Siegfried Hektor (5 December 2023). Pipeline for species-resolved full-length16S rRNA amplicon nanopore sequencing analysis of low-complexity bacterial microbiota (BioRxiv). Cold Spring Harbor Laboratory 10.1101/2023.12.05.570138

Donà, Valentina; Nordmann, Patrice; Kittl, Sonja; Schuller, Simone; Bouvier, Maxime; Poirel, Laurent; Endimiani, Andrea; Perreten, Vincent (2023). Emergence of OXA-48-producing Enterobacter hormaechei in a Swiss companion animal clinic and their genetic relationship to clinical human isolates. The journal of antimicrobial chemotherapy, 78(12), pp. 2950-2960. Oxford University Press 10.1093/jac/dkad337

Meier, Caroline S; Pagni, Marco; Richard, Sophie; Mühlethaler, Konrad; Almeida, João M G C F; Nevez, Gilles; Cushion, Melanie T; Calderón, Enrique J; Hauser, Philippe M (2023). Publisher Correction: Fungal antigenic variation using mosaicism and reassortment of subtelomeric genes' repertoires. Nature communications, 14(1), p. 7928. Nature Publishing Group 10.1038/s41467-023-43993-7

Blacksell, Stuart D; Dhawan, Sandhya; Kusumoto, Marina; Le, Kim Khanh; Summermatter, Kathrin; O'Keefe, Joseph; Kozlovac, Joseph; Almuhairi, Salama Suhail; Sendow, Indrawati; Scheel, Christina M; Ahumibe, Anthony; Masuku, Zibusiso M; Bennett, Allan M; Kojima, Kazunobu; Harper, David R; Hamilton, Keith (2023). The Biosafety Research Road Map: The Search for Evidence to Support Practices in the Laboratory-Foot and Mouth Disease Virus. Applied Biosafety, 28(4), pp. 199-215. Sage 10.1089/apb.2022.0041

Meier, Caroline S; Pagni, Marco; Richard, Sophie; Mühlethaler, Konrad; Almeida, João M G C F; Nevez, Gilles; Cushion, Melanie T; Calderón, Enrique J; Hauser, Philippe M (2023). Fungal antigenic variation using mosaicism and reassortment of subtelomeric genes' repertoires. Nature communications, 14(1), p. 7026. Nature Publishing Group 10.1038/s41467-023-42685-6

Oberli, Alexander; Furrer, Lavinia; Skoko, Lena; Müller, Norbert; Gottstein, Bruno; Bittel, Pascal (2023). A novel multiplex real-time PCR for the molecular diagnosis of metacestode infections in human patients. Clinical microbiology and infection, 29(11), 1451.e1-1451.e5. Elsevier 10.1016/j.cmi.2023.07.032

Blacksell, Stuart D; Summermatter, Kathrin; Masuku, Zibusiso M; Kojima, Kazunobu; Ross, Emma; Harper, David R; Hamilton, Keith (2023). Investment in biosafety and biosecurity: the need for a risk-based approach and systematic reporting of laboratory accidents to mitigate laboratory-acquired infections and pathogen escapes. The Lancet Microbe, 4(11), e854-e855. Elsevier 10.1016/S2666-5247(23)00288-4

Pitton, Melissa; Valente, Luca G; Oberhaensli, Simone; Casanova, Carlo; Sendi, Parham; Schnegg, Bruno; Jakob, Stephan M; Cameron, David R; Que, Yok-Ai; Fürholz, Monika (2023). Dynamics of bacterial pathogens at the driveline exit site in patients with ventricular assist devices: a prospective, observational, single-centre cohort study. The Journal of heart and lung transplantation, 42(10), pp. 1445-1454. Elsevier 10.1016/j.healun.2023.05.016

Yokoe, Deborah S; Advani, Sonali D; Anderson, Deverick J; Babcock, Hilary M; Bell, Michael; Berenholtz, Sean M; Bryant, Kristina A; Buetti, Niccolò; Calderwood, Michael S; Calfee, David P; Deloney, Valerie M; Dubberke, Erik R; Ellingson, Katherine D; Fishman, Neil O; Gerding, Dale N; Glowicz, Janet; Hayden, Mary K; Kaye, Keith S; Kociolek, Larry K; Landon, Emily; ... (2023). Introduction to A Compendium of Strategies to Prevent Healthcare-Associated Infections In Acute-Care Hospitals: 2022 Updates. Infection control and hospital epidemiology, 44(10), pp. 1533-1539. 10.1017/ice.2023.158

Schimanski, Bernd; Kräuchi, Rahel; Stettler, Jolanda; Lejon Crottet, Sofia; Niederhauser, Christoph; Clausen, Frederik Banch; Fontana, Stefano; Hodel, Markus; Amylidi-Mohr, Sofia; Raio, Luigi; Abbal, Claire; Henny, Christine (2023). Fetal RHD Screening in RH1 Negative Pregnant Women: Experience in Switzerland. Biomedicines, 11(10) MDPI 10.3390/biomedicines11102646

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Ravn, Christen; Neyt, Jeroen; Benito, Natividad; Abreu, Miguel Araújo; Achermann, Yvonne; Bozhkova, Svetlana; Coorevits, Liselotte; Ferrari, Matteo Carlo; Gammelsrud, Karianne Wiger; Gerlach, Ulf-Joachim; Giannitsioti, Efthymia; Gottliebsen, Martin; Jørgensen, Nis Pedersen; Madjarevic, Tomislav; Marais, Leonard; Menon, Aditya; Moojen, Dirk Jan; Pääkkönen, Markus; Pokorn, Marko; Pérez-Prieto, Daniel; ... (2023). Guideline for management of septic arthritis in native joints (SANJO). Journal of bone and joint infection, 8(1), pp. 29-37. Copernicus 10.5194/jbji-8-29-2023

Herzog, Mathias K-M; Cazzaniga, Monica; Peters, Audrey; Shayya, Nizar; Beldi, Luca; Hapfelmeier, Siegfried Hektor; Heimesaat, Markus M; Bereswill, Stefan; Frankel, Gad; Gahan, Cormac G M; Hardt, Wolf-Dietrich (2023). Mouse models for bacterial enteropathogen infections: insights into the role of colonization resistance. Gut microbes, 15(1), p. 2172667. Taylor & Francis Group 10.1080/19490976.2023.2172667

D'Incau, Stéphanie Maria; Atkinson, Andrew; Leitner, Lorenz; Kronenberg, Andreas; Kessler, Thomas M; Marschall, Jonas (2023). Bacterial species and antimicrobial resistance differ between catheter and non-catheter-associated urinary tract infections: Data from a national surveillance network. Antimicrobial stewardship & healthcare epidemiology, 3(1), e55. Cambridge University Press 10.1017/ash.2022.340

Kronenberg, Philipp A.; Reinehr, Michael; Eichenberger, Ramon Marc; Hasler, Sina; Laurimäe, Teivi; Weber, Achim; Deibel, Ansgar; Müllhaupt, Beat; Gottstein, Bruno; Müller, Norbert; Hemphill, Andrew; Deplazes, Peter (2023). Monoclonal antibody-based localization of major diagnostic antigens in metacestode tissue, excretory/secretory products, and extracellular vesicles of Echinococcus species (In Press). Frontiers in cellular and infection microbiology, 13 Frontiers 10.3389/fcimb.2023.1162530

Ukay, Ilker; Strahm, Carol; Vogt, Markus; Clauss, Martin; Borens, Olivier; Sendi, Parham (2023). Antibiotikaprophylaxe / Präemptive Therapie bei offenen Frakturen in der Orthopädie. Swiss Medical Forum ‒ Schweizerisches Medizin-Forum, 23(19), pp. 1056-1060. EMH Schweizerischer Ärzteverlag 10.4414/smf.2023.09299

Cook, Aislinn; Atkinson, Andrew; Kronenberg, Andreas; Agyeman, Philipp K A; Schlapbach, Luregn J; Berger, Christoph; Bielicki, Julia Anna (2023). Estimating antibiotic coverage from linked microbiological and clinical data from the Swiss Paediatric Sepsis Study to support empiric antibiotic regimen selection. Frontiers in Pediatrics, 11(1124165), p. 1124165. Frontiers 10.3389/fped.2023.1124165

Blacksell, Stuart D.; Dhawan, Sandhya; Kusumoto, Marina; Le, Kim Khanh; Summermatter, Katharina; O'Keefe, Joseph; Kozlovac, Joseph; Almuhairi, Salama Suhail; Sendow, Indrawati; Scheel, Christina M.; Ahumibe, Anthony; Masuku, Zibusiso M.; Bennett, Allan M.; Kojima, Kazunobu; Harper, David R.; Hamilton, Keith (2023). The Biosafety Research Road Map: The Search for Evidence to Support Practices in the Laboratory—Crimean Congo Haemorrhagic Fever Virus and Lassa Virus. Applied biosafety, 28(2), pp. 64-71. Mary Ann Liebert 10.1089/apb.2022.0044

Ernst, Alexander; Piragyte, Indre; MP, Ayisha Marwa; Le, Ngoc Dung; Grandgirard, Denis; Leib, Stephen L.; Oates, Andrew; Mercader, Nadia (2023). Identification of side effects of COVID-19 drug candidates on embryogenesis using an integrated zebrafish screening platform. Scientific reports, 13(1), p. 17037. Springer Nature 10.1038/s41598-023-43911-3

Günther, Gunar; Abu-Hussein, Nebal; Keller, Peter M.; Guler, Reto; Mukasa, Sandra L.; Wolmarans, Karen; Thienemann, Friedrich (2023). To treat or not to treat tuberculosis –clinical decision making in patients with previous pulmonary tuberculosis using 18F-FDG PET/CT. Respiratory Medicine Case Reports, 46, p. 101932. Elsevier 10.1016/j.rmcr.2023.101932

Urwyler, Pascal; Leimbacher, Marina; Charitos, Panteleimon; Moser, Stephan; Heijnen, Ingmar A F M; Trendelenburg, Marten; Thoma, Reto; Sumer, Johannes; Camacho-Ortiz, Adrián; Bacci, Marcelo R; Huber, Lars C; Stüssi-Helbling, Melina; Albrich, Werner C; Sendi, Parham; Osthoff, Michael (2023). Recombinant C1 inhibitor in the prevention of severe COVID-19: a randomized, open-label, multi-center phase IIa trial. Frontiers in immunology, 14(1255292), p. 1255292. Frontiers Research Foundation 10.3389/fimmu.2023.1255292

Züst, Roland; Ackermann-Gäumann, Rahel; Liechti, Nicole; Siegrist, Denise; Ryter, Sarah; Portmann, Jasmine; Lenz, Nicole; Beuret, Christian; Koller, Roger; Staehelin, Cornelia; Kuenzli, Andrea B.; Marschall, Jonas; Rothenberger, Sylvia; Engler, Olivier (2023). Presence and Persistence of Andes Virus RNA in Human Semen. Viruses, 15(11), p. 2266. MDPI 10.3390/v15112266

Ravi, Denho; Ntinopoulou, Erato; Guetta, Nessim; Weier, Manuela; Vogel, Verena; Spellerberg, Barbara; Sendi, Parham; Gremlich, Sandrine; Roger, Thierry; Giannoni, Eric (2023). Dysregulated monocyte-derived macrophage response to Group B Streptococcus in newborns. Frontiers in immunology, 14(1268804), p. 1268804. Frontiers Research Foundation 10.3389/fimmu.2023.1268804

Werren, Joel P; Mostacci, Nadja; Gjuroski, Ilche; Holivololona, Lalaina; Troxler, Lukas J; Hathaway, Lucy J; Furrer, Julien; Hilty, Markus (2023). Carbon source-dependent capsule thickness regulation in Streptococcus pneumoniae. Frontiers in cellular and infection microbiology, 13(1279119), p. 1279119. Frontiers 10.3389/fcimb.2023.1279119

Knirsch, Walter; Schuler, Stefanie Katharina; Crisinel, Pierre Alex; Joye, Raphael; Rohr, Marie; Bressieux-Degueldre, Sabrina; Glöckler, Martin; Paioni, Paolo; Agyeman, Philipp K. A.; Sendi, Parham (2023). Den Risikofaktoren für eine infektiöse Endokarditis auf der Spur. Swiss Medical Forum ‒ Schweizerisches Medizin-Forum, 23(39), pp. 1326-1327. EMH Schweizerischer Ärzteverlag 10.4414/smf.2023.09375

Terrazos Miani, Miguel A.; Borcard, Loïc; Gempeler, Sonja; Baumann, Christian; Bittel, Pascal; Leib, Stephen L.; Neuenschwander, Stefan; Ramette, Alban (2023). NASCarD (Nanopore Adaptive Sampling with Carrier DNA): A rapid, PCR-free method for whole genome sequencing of pathogens in clinical samples (Submitted) (medRxiv). Cold Spring Harbor Laboratory 10.1101/2023.03.10.23287094

Guan, Hang; Caggìa, Veronica; Gómez-Chamorro, Andrea; Fischer, Daniela; Coll-Crespí, Miquel; Liu, Xiaowen; Chávez-Capilla, Teresa; Schlaeppi, Klaus; Ramette, Alban; Mestrot, Adrien; Bigalke, Moritz (2023). The Effects of Soil Microbial Disturbance and Plants on Arsenic Concentrations and Speciation in Soil Water and Soils. Exposure and health, 16(3), pp. 805-820. Springer 10.1007/s12403-023-00593-6

2022

Suttels, Véronique; Van Singer, Mathias; Clack, Lauren Catherine; Plüss-Suard, Catherine; Niquille, Anne; Mueller, Yolanda; Boillat Blanco, Noémie (2022). Factors Influencing the Implementation of Antimicrobial Stewardship in Primary Care: A Narrative Review. Antibiotics, 12(1) MDPI 10.3390/antibiotics12010030

Piezzi, Vanja; Wassilew, Nasstasja; Atkinson, Andrew; D'Incau, Stéphanie; Kaspar, Tanja; Seth-Smith, Helena MB; Casanova, Carlo; Bittel, Pascal; Jent, Philipp; Sommerstein, Rami; Buetti, Niccolò; Marschall, Jonas (2022). Nosocomial outbreak of vancomycin-resistant Enterococcus faecium (VRE) ST796, Switzerland, 2017 to 2020. Eurosurveillance, 27(48) European Centre for Disease Prevention and Control 10.2807/1560-7917.ES.2022.27.48.2200285

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Bock, Lukas; Aguilar-Bultet, Lisandra; Egli, Adrian; Battegay, Manuel; Kronenberg, Andreas; Vogt, Roland; Kaufmann, Carole; Tschudin-Sutter, Sarah (2022). Air temperature and incidence of extended-spectrum beta-lactamase (ESBL)-producing Enterobacteriaceae. Environmental research, 215(Pt 2), p. 114146. Elsevier 10.1016/j.envres.2022.114146

Moser, Aline I; Campos-Madueno, Edgar I; Perreten, Vincent; Endimiani, Andrea (2022). Genome stability during serial sub-culturing in hyperepidemic multidrug-resistant Klebsiella pneumoniae and Escherichia coli. Journal of global antimicrobial resistance, 31, pp. 152-161. Elsevier 10.1016/j.jgar.2022.08.014

Sendi, Parham; Branca, Mattia; Büchi, Annina Elisabeth; Widmer, Nadja; Tande, Aaron J; Gowland, Peter (2022). The disease burden of Delta and Omicron variants of SARS-CoV-2 in a Predominantly Vaccinated and healthy cohort [letter to the editor]. Clinical microbiology and infection, 28(12), pp. 1659-1661. Elsevier 10.1016/j.cmi.2022.08.019

Campos-Madueno, Edgar I; Moser, Aline I; Jost, Géraldine; Maffioli, Carola; Bodmer, Thomas; Perreten, Vincent; Endimiani, Andrea (2022). Erratum to 'Carbapenemase-producing Klebsiella pneumoniae strains in Switzerland: human and non-human settings may share high-risk clones' [Journal of Global Antimicrobial Resistance 28 (2022) 206-215]. Journal of global antimicrobial resistance, 31(394), p. 394. Elsevier 10.1016/j.jgar.2022.08.020

Sudatip, Duangdao; Mostacci, Nadezda; Thamlikitkul, Visanu; Oppliger, Anne; Hilty, Markus (2022). Influence of occupational exposure to pigs or chickens on human gut microbiota composition in Thailand. One health, 15(100463), p. 100463. Elsevier 10.1016/j.onehlt.2022.100463

Lux, Janine; Holivololona, Lalaina; San Millan Gutierrez, Raquel; Hilty, Markus; Ramette, Alban; Heller, Manfred; Hathaway, Lucy J (2022). AmiA and AliA peptide ligands are secreted by Klebsiella pneumoniae and inhibit growth of Streptococcus pneumoniae. Scientific reports, 12(1), p. 22268. Springer Nature 10.1038/s41598-022-26838-z

Niederhauser, Christoph; Tinguely, Caroline; Stolz, Martin; Vock, Michael; Amar El Dusouqui, Soraya; Gowland, Peter (2022). Evolution of Blood Safety in Switzerland over the Last 25 years for HIV, HCV, HBV and Treponema pallidum. Viruses, 14(12), pp. 1-17. MDPI 10.3390/v14122611

Polish, Louis B; O'Connell, Elise M; Barth, Thomas F E; Gottstein, Bruno; Zajac, Anne; Gibson, Pamela C; Bah, Aissatou; Kirchgessner, Megan; Estrada, Marko; Seguin, M Alexis; Ramirez-Barrios, Roger (2022). European Haplotype of Echinococcus multilocularis in the United States. The New England journal of medicine, 387(20), pp. 1902-1904. Massachusetts Medical Society 10.1056/NEJMc2210000

Raad, Nicole; Tandon, Disha; Hapfelmeier, Siegfried; Polacek, Norbert (2022). The stationary phase-specific sRNA FimR2 is a multifunctional regulator of bacterial motility, biofilm formation and virulence. Nucleic acids research, 50(20), pp. 11858-11875. Oxford University Press 10.1093/nar/gkac1025

Kofler, Jacob; Ramette, Alban; Iseli, Patricia; Stauber, Lea; Fichtner, Jens; Droz, Sara; Zihler Berner, Annina; Meier, Anna Bettina; Begert, Michelle; Negri, Sabine; Jachmann, Anne; Keller, Peter Michael; Staehelin, Cornelia; Grützmacher, Barbara (2022). Ongoing toxin-positive diphtheria outbreaks in a federal asylum centre in Switzerland, analysis July to September 2022. Eurosurveillance, 27(44) European Centre for Disease Prevention and Control 10.2807/1560-7917.ES.2022.27.44.2200811

Voellmy, Irene Katharina; Lang, Claudia; Gasser, Michael; Kronenberg, Andreas (2022). Antibiotic resistance surveillance of Klebsiella pneumoniae complex is affected by refined MALDI-TOF identification, Swiss data, 2017 to 2022. Eurosurveillance, 27(45) European Centre for Disease Prevention and Control 10.2807/1560-7917.ES.2022.27.45.2200104

Fernandez, Javier E; Seth-Smith, Helena M B; Nordmann, Patrice; Egli, Adrian; Endimiani, Andrea; Perreten, Vincent (2022). Intra- and Interspecies Spread of a Novel Conjugative Multidrug Resistance IncC Plasmid Coharboring blaOXA-181 and armA in a Cystic Fibrosis Patient. Microbiology spectrum, 10(5), e0312122. American Society for Microbiology 10.1128/spectrum.03121-22

Gueissaz, Louise; Hauri, Noëmi; Kocher, Juliane; Lavallée, Marc-André; Munday, Manon F; Renggli, Luzia; Béguelin, Charles (2022). [Methicillin-susceptible Staphylococcus aureus bacteraemia]. Revue médicale suisse, 18(799), pp. 1889-1895. Médecine & Hygiène 10.53738/REVMED.2022.18.799.1889

Kraemer, Julia G; Hilty, Markus; Oppliger, Anne (2022). Occupational Exposure to β-d-Glucans, Mould Allergens, Endotoxins and Cultivable Fungi in Pig Farms. Annals of work exposures and health, 66(8), pp. 967-973. Oxford University Press 10.1093/annweh/wxac055

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Kelly, Jenna N; Laloli, Laura; V'kovski, Philip; Holwerda, Melle; Portmann, Jasmine; Thiel, Volker; Dijkman, Ronald (2022). Comprehensive single cell analysis of pandemic influenza A virus infection in the human airways uncovers cell-type specific host transcriptional signatures relevant for disease progression and pathogenesis. Frontiers in immunology, 13(978824), p. 978824. Frontiers Research Foundation 10.3389/fimmu.2022.978824

Urwyler, Pascal; Moser, Stephan; Trendelenburg, Marten; Sendi, Parham; Osthoff, Michael (2022). Targeting thromboinflammation in COVID-19 - A narrative review of the potential of C1 inhibitor to prevent disease progression. Molecular immunology, 150, pp. 99-113. Elsevier 10.1016/j.molimm.2022.08.008

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Oyewole, Oluwaseun Rume-Abiola; Latzin, Philipp; Brugger, Silvio D; Hilty, Markus (2022). Strain-level resolution and pneumococcal carriage dynamics by single-molecule real-time (SMRT) sequencing of the plyNCR marker: a longitudinal study in Swiss infants. Microbiome, 10(1), p. 152. BioMed Central 10.1186/s40168-022-01344-6

Grädel, C; Ireddy, N R; Koch, M C; Baumann, C; Terrazos Miani, M A; Barbani, M T; Steinlin-Schopfer, J; Suter-Riniker, F; Leib, S L; Ramette, A (2022). Genome Sequences of Rare Human Enterovirus Genotypes Recovered from Clinical Respiratory Samples in Bern, Switzerland. Microbiology resource announcements, 11(9), e0027622. American Society for Microbiology 10.1128/mra.00276-22

Hofmann, Eveline; Mühlethaler, Konrad; Pollak, Matthias; Ott, Daniel; Bienz, Nora; Zimmerli, Stefan; Hirzel, Cédric (2022). Travel related histoplasmosis - a diagnostic challenge in a patient with tumor necrosis factor alpha (TNF-α) inhibitor therapy. Tropical Diseases, Travel Medicine and Vaccines, 8(1), p. 21. BioMed Central 10.1186/s40794-022-00178-2

Zimmermann, Josua; Friedli, Nicole; Bavato, Francesco; Stämpfli, Philipp; Coray, Rebecca; Baumgartner, Markus R; Grandgirard, Denis; Leib, Stephen L; Opitz, Antje; Seifritz, Erich; Stock, Ann-Kathrin; Beste, Christian; Cole, David M; Quednow, Boris B (2022). White matter alterations in chronic MDMA use: Evidence from diffusion tensor imaging and neurofilament light chain blood levels. NeuroImage: Clinical, 36, p. 103191. Elsevier 10.1016/j.nicl.2022.103191

Daouk, Silwan; Heim, Dagmar; Kronenberg, Andreas; Léger, Anaïs; Overesch, Gudrun; Plüss-Suard, Catherine; Schwermer, Heinzpeter (2022). Swiss Antibiotic Resistance Report 2022. Usage of Antibiotics and Occurrence of Antibiotic Resistance in Switzerland. Bern, Switzerland: Swiss Federal Office of Public Health

Studer, Eveline; Meylan, Mireille; Stucki, Dimitri Yves; Becker, Jens Michael; Dijkman, Ronald; Holwerda, Melle (5 September 2022). Prevalence of BRD-related viral pathogens in the upper respiratory tract of Swiss veal calves (Unpublished). In: 73rd Annual Meeting of EAAP in Porto. Porto. 05.09.2022.

Sendi, Parham; Razonable, Raymund R; Nelson, Sandra B; Soriano, Alex; Gandhi, Rajesh Tim (2022). First-generation Oral Antivirals Against SARS-CoV-2. Clinical microbiology and infection, 28(9), pp. 1230-1235. Elsevier 10.1016/j.cmi.2022.04.015

Young, Bernadette C; Bush, Stephen J; Lipworth, Sam; George, Sophie; Dingle, Kate E; Sanderson, Nick; Brankin, Alice; Walker, Timothy; Sharma, Srilakshmi; Leong, James; Plaha, Puneet; Hofer, Monika; Chiodini, Peter; Gottstein, Bruno; Furrer, Lavinia; Crook, Derrick; Brent, Andrew (2022). Modern Solutions for Ancient Pathogens: Direct Pathogen Sequencing for Diagnosis of Lepromatous Leprosy and Cerebral Coenurosis. Open Forum Infectious Diseases, 9(9), ofac428. Oxford University Press 10.1093/ofid/ofac428

Endimiani, Andrea (30 August 2022). Control points to reduce spread of antibiotic resistance: a One-Health approach (Unpublished). In: Annual Congress Swiss Society for Microbiology (SSM). 30.08.22-01.09.22.

Yarahmadov, Tural; Wang, Junhua; Sanches-Taltavull, Daniel; Rojas, Cristian A Alvarez; Brodie, Tess; Büchi, Isabel; Keogh, Adrian; Gottstein, Bruno; Stroka, Deborah; Beldi, Guido (2022). Primary Infection by E. multilocularis Induces Distinct Patterns of Cross Talk between Hepatic Natural Killer T Cells and Regulatory T Cells in Mice. Infection and immunity, 90(8), e0017422. American Society for Microbiology 10.1128/iai.00174-22

Schmid, Dominik W; Fackelmann, Gloria; Wasimuddin, ; Rakotondranary, Jacques; Ratovonamana, Yedidya R; Montero, B Karina; Ganzhorn, Jörg U; Sommer, Simone (2022). A framework for testing the impact of co-infections on host gut microbiomes. Animal microbiome, 4(1), p. 48. 10.1186/s42523-022-00198-5

Chiffi, Gabriele; Grandgirard, Denis; Stöckli, Sabrina; Valente, Luca G; Adamantidis, Antoine; Leib, Stephen L (2022). Tick-borne encephalitis affects sleep-wake behavior and locomotion in infant rats. Cell & bioscience, 12(1), p. 121. BioMed Central 10.1186/s13578-022-00859-7

Kusejko, Katharina; Tschumi, Nadine; Chaudron, Sandra E; Nguyen, Huyen; Battegay, Manuel; Bernasconi, Enos; Böni, Jürg; Huber, Michael; Calmy, Alexandra; Cavassini, Matthias; Egle, Alexander; Grabmeier-Pfistershammer, Katharina; Haas, Bernhard; Hirsch, Hans; Klimkait, Thomas; Öllinger, Angela; Perreau, Matthieu; Ramette, Alban; Flury, Baharak Babouee; Sarcletti, Mario; ... (2022). Similar but different: Integrated phylogenetic analysis of Austrian and Swiss HIV-1 sequences reveal differences in transmission patterns of the local HIV-1 epidemics. Journal of acquired immune deficiency syndromes, 90(4), e4-e12. Wolters Kluwer Health 10.1097/QAI.0000000000002949

Sorgenfrei, Michèle; Hürlimann, Lea M; Remy, Mélissa M; Keller, Peter Michael; Seeger, Markus A (2022). Biomolecules capturing live bacteria from clinical samples. Trends in biochemical sciences, 47(8), pp. 673-688. Elsevier Current Trends 10.1016/j.tibs.2022.03.018

Sendi, Parham; Tande, Aaron J (2022). Analyzing COVID-19 vaccine efficacy in vulnerable communities: efforts Beyond Addressing vaccine inequity. Clinical microbiology and infection, 28(8), pp. 1053-1054. Elsevier 10.1016/j.cmi.2022.04.012

Uster, Stephanie; Topalli, Zana; Sasse, Thomas; Suter-Riniker, Franziska; Barbani, Maria Teresa (2022). Evaluation of the DiaSorin LIAISON SARS-CoV-2 antigen assay on nasopharyngeal swabs in two different SARS-CoV-2 pandemic waves in Switzerland: The impact of the Omicron variant on its performance. Journal of clinical virology plus, 2(3), p. 100095. Elsevier 10.1016/j.jcvp.2022.100095

Radulovic, Emilia; Mehinagic, Kemal; Wüthrich, Tsering; Hilty, Markus; Posthaus, Horst; Summerfield, Artur; Ruggli, Nicolas; Benarafa, Charaf (2022). The baseline immunological and hygienic status of pigs impact disease severity of African swine fever. PLoS pathogens, 18(8), e1010522. Public Library of Science 10.1371/journal.ppat.1010522

Le, Ngoc Dung; Steinfort, Marel; Grandgirard, Denis; Maleska, Aleksandra; Leppert, David; Kuhle, Jens; Leib, Stephen L (2022). The CCR5 antagonist maraviroc exerts limited neuroprotection without improving neurofunctional outcome in experimental pneumococcal meningitis. Scientific reports, 12(1), p. 12945. Springer Nature 10.1038/s41598-022-17282-0

Gössi, Simona; Bacher, Ulrike; Haslebacher, Claudia; Nagler, Michael; Suter, Franziska; Staehelin, Cornelia; Novak, Urban; Pabst, Thomas (2022). Humoral Responses to Repetitive Doses of COVID-19 mRNA Vaccines in Patients with CAR-T-Cell Therapy. Cancers, 14(14) MDPI AG 10.3390/cancers14143527

Nguyen, Huyen; Hampel, Benjamin; Nuñez, David Garcia; Battegay, Manuel; Hachfeld, Anna; Bernasconi, Enos; Calmy, Alexandra; Cavassini, Matthias; Vernazza, Pietro; Fellay, Jacques; Rudolph, Hannes; Huber, Michael; Leuzinger, Karoline; Perreau, Matthieu; Scherrer, Alexandra; Ramette, Alban Nicolas; Yerly, Sabine; Günthard, Huldrych F; Kouyos, Roger D and Kusejko, Katharina (2022). Correction to: Identifying and Characterizing Trans Women in the Swiss HIV Cohort Study as an Epidemiologically Distinct Risk Group. Clinical infectious diseases, 74(12), p. 2266. Oxford University Press 10.1093/cid/ciac242

Friedli, Olivier; Völlmy, Irene; Schrenzel, Jacques; Harbarth, Stephan; Kronenberg, Andreas (2022). Retrospective data analysis for definition of multidrug resistance in gram-negative bacteria - a consensus proposal. Swiss medical weekly, 152(w30195), w30195. EMH Media 10.4414/smw.2022.w30195

Horn, Michael P; Jonsdottir, Hulda R; Brigger, Daniel; Damonti, Lauro; Suter-Riniker, Franziska; Endrich, Olga; Froehlich, Tanja K; Fiedler, Martin; Largiadèr, Carlo R; Marschall, Jonas; Weber, Benjamin; Eggel, Alexander; Nagler, Michael (2022). Serological testing for SARS-CoV-2 antibodies in clinical practice: a comparative diagnostic accuracy study. Allergy, 77(7), pp. 2090-2103. Wiley 10.1111/all.15206

Peruzzu, Angela; Mastrandrea, Scilla; Fancellu, Alessandro; Bonelli, Piero; Muehlethaler, Konrad; Masala, Giovanna; Santucciu, Cinzia (2022). Comparison and evaluation of analytic and diagnostic performances of four commercial kits for the detection of antibodies against Echinococcus granulosus and multilocularis in human sera. Comparative immunology, microbiology and infectious diseases, 86, p. 101816. Elsevier 10.1016/j.cimid.2022.101816

Sendi, Parham; Thierstein, Marc; Widmer, Nadja; Babongo Bosombo, Flora; Büchi, Annina Elisabeth; Güntensperger, Dominik; Blum, Manuel Raphael; Baldan, Rossella; Tinguely, Caroline; Gahl, Brigitta; Heg, Dik; Theel, Elitza S.; Berbari, Elie; Endimiani, Andrea; Gowland, Peter; Niederhauser, Christoph (2022). Serosurveillance after a COVID-19 Vaccine Campaign in a Swiss Police Cohort. Immunity, inflammation and disease, 10(7), e640. Wiley 10.1002/iid3.640

Campos-Madueno, Edgar I.; Mauri, Carola; Meroni, Elisa; Porragas Paseiro, Pablo; Consonni, Alessandra; Luzzaro, Francesco; Endimiani, Andrea (2022). Simultaneous gut colonization by Klebsiella grimontii and Escherichia coli co-possessing the blaKPC-3-carrying pQil plasmid. European journal of clinical microbiology & infectious diseases, 41(7), pp. 1087-1091. Springer 10.1007/s10096-022-04462-z

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Jegerlehner, Sabrina; Suter-Riniker, Franziska; Jent, Philipp; Bittel, Pascal; Nagler, Michael (2022). Diagnostic accuracy of SARS-CoV-2 saliva antigen testing in a real-life clinical setting. International journal of infectious diseases, 119, pp. 38-40. Elsevier 10.1016/j.ijid.2022.03.037

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Balmer, Lisa; Seth-Smith, Helena M B; Egli, Adrian; Casanova, Carlo; Kronenberg, Andreas Oskar; Schrenzel, Jacques; Marschall, Jonas; Sommerstein, Rami (2022). Agrobacterium species bacteraemia, Switzerland, 2008 to 2019: a molecular epidemiological study. Antimicrobial resistance and infection control, 11(1), p. 47. BioMed Central 10.1186/s13756-022-01086-y

Stader, Felix; Battegay, Manuel; Sendi, Parham; Marzolini, Catia (2022). Physiologically Based Pharmacokinetic Modelling to Investigate the Impact of the Cytokine Storm on CYP3A Drug Pharmacokinetics in COVID-19 Patients. Clinical pharmacology and therapeutics, 111(3), pp. 579-584. Wiley 10.1002/cpt.2402

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Takácsi-Nagy, Anna; Kilár, Ferenc; Thormann, Wolfgang (2022). The effect of pH adjusted electrolytes on capillary isoelectric focusing assessed by high-resolution dynamic computer simulation. Electrophoresis, 43(5-6), pp. 669-678. Wiley 10.1002/elps.202100367

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Schenker, Carla; Hirzel, Cédric; Walti, Laura N.; Zeerleder, Sacha S.; Andres, Martin; Ramette, Alban; Barbani, Maria T.; Suter-Riniker, Franziska; Holbro, Andreas; Tritschler, Tobias (2022). Convalescent plasma and remdesivir for protracted COVID-19 in a patient with chronic lymphocytic leukaemia: a case report of late relapse after rapid initial response. British journal of haematology, 196(3), e27-e29. Wiley-Blackwell 10.1111/bjh.17806

Renggli, L.; Gasser, M.; Plüss-Suard, C.; Harbarth, S.; Kronenberg, A. (2022). Temporal and structural patterns of extended-spectrum cephalosporin-resistant Klebsiella pneumoniae incidence in Swiss hospitals. Journal of hospital infection, 120, pp. 36-42. Elsevier 10.1016/j.jhin.2021.11.006

Donà, Valentina; Ramette, Alban; Perreten, Vincent (2022). Comparative genomics of 26 complete circular genomes of 18 different serotypes of Actinobacillus pleuropneumoniae. Microbial genomics, 8(2), 000776. Microbiology Society 10.1099/mgen.0.000776

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Duran Ramirez, Jessy J; Ballouz, Tala; Nguyen, Huyen; Kusejko, Katharina; Chaudron, Sandra E; Huber, Michael; Hirsch, Hans H; Perreau, Matthieu; Ramette, Alban; Yerly, Sabine; Cavassini, Matthias; Stöckle, Marcel; Furrer, Hansjakob; Vernazza, Pietro; Bernasconi, Enos; Günthard, Huldrych F; Kouyos, Roger D (2022). Increasing Frequency and Transmission of HIV-1 Non-B Subtypes among Men Who Have Sex with Men in the Swiss HIV Cohort Study. The journal of infectious diseases, 225(2), pp. 306-316. Oxford University Press 10.1093/infdis/jiab360

Ben Salah, Eya; Barrera, Coralie; Sakly, Wahiba; Mosbahi, Sana; Balliau, Thierry; Franche, Nathalie; Gottstein, Bruno; Ben Youssef, Sabrine; Mekki, Mongi; Babba, Hamouda; Millon, Laurence (2022). Novel biomarkers for the early prediction of pediatric cystic echinococcosis post-surgical outcomes. Journal of infection, 84(1), pp. 87-93. Elsevier 10.1016/j.jinf.2021.09.023

Thormann, Wolfgang; Mosher, Richard A (2022). Dynamic computer simulations of electrophoresis: 2010-2020. Electrophoresis, 43(1-2), pp. 10-36. Wiley 10.1002/elps.202100191

Müller, Annelies; Kleynhans, Jackie; de Gouveia, Linda; Meiring, Susan; Cohen, Cheryl; Hathaway, Lucy Jane; von Gottberg, Anne (2022). Streptococcus pneumoniae Serotypes Associated with Death, South Africa, 2012-2018. Emerging infectious diseases, 28(1), pp. 166-179. Centers for Disease Control and Prevention 10.3201/eid2801.210956

Weingartner, Michael; Stücheli, Simon; Jebbawi, Fadi; Gottstein, Bruno; Beldi, Guido; Lundström-Stadelmann, Britta; Wang, Junhua; Odermatt, Alex (2022). Albendazole reduces hepatic inflammation and endoplasmic reticulum-stress in a mouse model of chronic Echinococcus multilocularis infection. PLoS neglected tropical diseases, 16(1), e0009192. Public Library of Science 10.1371/journal.pntd.0009192

Chiffi, Gabriele; Grandgirard, Denis; Sendi, Parham; Dietmann, Anelia; Bassetti, Claudio L. A.; Leib, Stephen (2022). Sleep-Wake and Circadian Disorders after Tick-Borne Encephalitis. Microorganisms, 10(2), p. 304. MDPI 10.3390/microorganisms10020304

Askarian, Mehrdad; Semenov, Aleksandr; Llopis, Ferran; Rubulotta, Francesca; Dragovac, Gorana; Pshenichnaya, Natalia; Assadian, Ojan; Ruch, Yvon; Shayan, Zahra; Padilla Fortunatti, Cristobal; Lucey, Daniel; Almohaizeie, Abdullah; Kamal, Abu Hena Mostafa; Ogunshe, Adenike; Konkayev, Aidos; Beg, Asim; Primerano, Enzo; Amer, Fatma; Kumari Pilli, Hema Prakash; Hung, Ivan; ... (2022). The COVID-19 vaccination acceptance/hesitancy rate and its determinants among healthcare workers of 91 Countries: A multicenter cross-sectional study. EXCLI journal, 21, pp. 93-103. 10.17179/excli2021-4439

Hirzel, Cédric; Grandgirard, Denis; Surial, Bernard; Wider, Manon F.; Leppert, David; Kuhle, Jens; Walti, Laura N.; Schefold, Joerg C.; Spinetti, Thibaud; Suter-Riniker, Franziska; Dijkman, Ronald; Leib, Stephen L (2022). Neuro-axonal injury in COVID-19: the role of systemic inflammation and SARS-CoV-2 specific immune response. Therapeutic advances in neurological disorders, 15, p. 17562864221080528. Sage 10.1177/17562864221080528

Valente, Luca G; Le, Ngoc Dung; Pitton, Melissa; Chiffi, Gabriele; Grandgirard, Denis; Jakob, Stephan M; Cameron, David R; Resch, Grégory; Que, Yok-Ai; Leib, Stephen L (2022). Efficacy assessment of a novel endolysin PlyAZ3aT for the treatment of ceftriaxone-resistant pneumococcal meningitis in an infant rat model. PLoS ONE, 17(4), e0266928. Public Library of Science 10.1371/journal.pone.0266928

Dellsperger, Sandra; Kramer, Simea; Stoller, Michael; Burger, Annika; Geissbühler, Elio; Amsler, Isabel; Hirsig, Anna; Weyer, Linda; Hebeisen, Ursula; Aebi, Philipp; Burgherr, Nicolas; Brügger, Fabienne; Chaix, Edouard; Salamoni, Jérôme; Glauser, Sandra; Büchi, Annina Elisabeth; Béguelin, Charles; Waldegg, Gabriel; Kessler, Bernhard; Egger, Martin; ... (2022). Early Switch from Intravenous to Oral Antibiotics in Skin- and Soft-tissue Infections: An Algorithm-based Prospective Multicentre Pilot Trial. Open Forum Infectious Diseases, 9(7) Oxford University Press 10.1093/ofid/ofac197

Sendi, Parham; Strahm, Carol; Vogt, Markus; Achermann, Yovnne; Borens, Olivier; Clauss, Martin; Ukay, Ilker (2022). Perioperative Antibiotikaprophylaxe bei elektiver Gelenkprothesenimplantation. Swiss medical forum EMH Schweizerischer Ärzteverlag AG 10.4414/smf.2022.09084

Sendi, Parham; Battegay, Manuel (2022). Orale Virostatika gegen SARS-CoV-2. Swiss medical forum EMH Schweizerischer Ärzteverlag AG 10.4414/smf.2022.09108

Bitzenhofer, Michaela; Suter-Riniker, Franziska; Moor, Matthias B; Sidler, Daniel; Horn, Michael P; Gschwend, Anna; Staehelin, Cornelia; Rauch, Andri; Helbling, Arthur; Jörg, Lukas (2022). Humoral response to mRNA vaccines against SARS-CoV-2 in patients with humoral immunodeficiency disease. PLoS ONE, 17(6), e0268780. Public Library of Science 10.1371/journal.pone.0268780

Schöbi, Nina; Agyeman, Philipp KA; Duppenthaler, Andrea; Bartenstein, Andreas; Keller, Peter M; Suter-Riniker, Franziska; Schmidt, Kristina M; Kopp, Matthias V; Aebi, Christoph (2022). PEDIATRIC TULAREMIA– A CASE SERIES FROM A SINGLE CENTER IN SWITZERLAND. Open Forum Infectious Diseases, 9(7) Oxford University Press 10.1093/ofid/ofac292

Hammer, Helly; Hoepner, Robert; Friedli, Christoph; Leib, Stephen L; Suter-Riniker, Franziska; Diem, Lara; Kamber, Nicole; Chan, Andrew; Salmen, Anke; Kamm, Christian P (2022). Comparison of mRNA Vaccinations with BNT162b2 or mRNA-1273 in Anti-CD20-Treated Multiple Sclerosis Patients. Vaccines, 10(6), p. 922. MDPI 10.3390/vaccines10060922

Laloli, Laura; Licheri, Manon Flore; Probst, Lukas; Licheri, Matthias; Gultom, Mitra; Holwerda, Melle; V'kovski, Philip; Dijkman, Ronald (2022). Time-resolved characterization of the innate immune response in the respiratory epithelium of human, porcine, and bovine during influenza virus infection. Frontiers in immunology, 13, p. 970325. Frontiers Research Foundation 10.3389/fimmu.2022.970325

Barut, Tuba; Halwe, Nico Joel; Taddeo, Adriano; Kelly, Jenna N.; Schön, Jacob; Ebert, Nadine; Ulrich, Lorenz; Devisme, Christelle; Steiner, Silvio; Trüeb, Bettina Salome; Hoffmann, Bernd; Berenguer Veiga, Inês; Leborgne, Nathan Georges François; Aguiar Moreira, Etori; Breithaupt, Angele; Wylezich, Claudia; Höper, Dirk; Wernike, Kerstin; Godel, Aurélie; Thomann, Lisa; ... (2022). The spike gene is a major determinant for the SARS-CoV-2 Omicron-BA. 1 phenotype (bioRxiv). Cold Spring Harbor Laboratory

Sendi, Parham; Ferry, Tristan (2022). Lysins - a new armamentarium for the treatment of bone and joint infections? Journal of bone and joint infection, 7(5), pp. 187-189. Copernicus Publications 10.5194/jbji-7-187-2022

Kronenberg, Andreas; Renggli, Luzia (2022). Handschlag ja oder nein. Hygieneregeln nach COVID-19. Schweizerische Ärztezeitung, 103(35), pp. 1110-1113. EMH Schweizerischer Ärzteverlag AG 10.4414/saez.2022.20892

Sewing, Lilian; Meier, Christian; Sendi, Parham; Christ, Emanuel (2022). Glukokortikoidassoziierte Nebenwirkungen - Prävention und Management. Primary and Hospital Care, 22(11) EMH Swiss Medical Publishers Ltd. 10.4414/phc-f.2022.10495

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2021

Kratzel, Annika; Kelly, Jenna N; V'kovski, Philip; Portmann, Jasmine; Brüggemann, Yannick; Todt, Daniel; Ebert, Nadine; Shrestha, Neeta; Plattet, Philippe; Staab-Weijnitz, Claudia A; von Brunn, Albrecht; Steinmann, Eike; Dijkman, Ronald; Zimmer, Gert; Pfaender, Stephanie; Thiel, Volker (2021). A genome-wide CRISPR screen identifies interactors of the autophagy pathway as conserved coronavirus targets. PLoS biology, 19(12), e3001490. Public Library of Science 10.1371/journal.pbio.3001490

Akello, Joyce Odeke; Kamgang, Richard; Barbani, Maria Teresa; Suter-Riniker, Franziska; Aebi, Christoph; Beuret, Christian; Paris, Daniel H.; Leib, Stephen L.; Ramette, Alban (2021). Genomic analyses of human adenoviruses unravel novel recombinant genotypes associated with severe infections in pediatric patients. Scientific reports, 11(1), p. 24038. Springer Nature 10.1038/s41598-021-03445-y

Ungureanu, Anamaria; van der Meer, Julia; Bicvic, Antonela; Abbuehl, Lena; Chiffi, Gabriele; Jaques, Léonore; Suter-Riniker, Franziska; Leib, Stephen L.; Bassetti, Claudio L.A.; Dietmann, Anelia (2021). Meningitis, meningoencephalitis and encephalitis in Bern: an observational study of 258 patients. BMC neurology, 21(1), p. 474. BioMed Central 10.1186/s12883-021-02502-3

Kaiser-Thom, Sarah; Hilty, Markus; Axiak, Shannon; Gerber, Vinzenz (2021). The skin microbiota in equine pastern dermatitis: a case-control study of horses in Switzerland. Veterinary dermatology, 32(6), 646-e172. Wiley 10.1111/vde.12955

Buetti, Niccolò; Marschall, Jonas; Timsit, Jean-François; Atkinson, Andrew; Kronenberg, Andreas; Sommerstein, Rami (2021). Distribution of pathogens and antimicrobial resistance in bacteremia according to hospitalization duration: A nationwide surveillance study in Switzerland. Clinical microbiology and infection, 27(12), pp. 1820-1825. Elsevier 10.1016/j.cmi.2021.04.025

Riester, Elena; Majchrzak, Mario; Mühlbacher, Annelies; Tinguely, Caroline; Findeisen, Peter; Kolja Hegel, Johannes; Laimighofer, Michael; Rank, Christopher M.; Schönfeld, Kathrin; Langen, Florina; Niederhauser, Christoph (2021). Multicentre Performance Evaluation of the Elecsys Anti-SARS-CoV-2 Immunoassay as an Aid in Determining Previous Exposure to SARS-CoV-2. Infectious disease and therapy, 10(4), pp. 2381-2397. Springer 10.1007/s40121-021-00504-9

Dazio, Valentina; Nigg, Aurélien; Schmidt, Janne S; Brilhante, Michael; Campos-Madueno, Edgar I.; Mauri, Nico; Kuster, Stefan P; Gobeli Brawand, Stefanie; Willi, Barbara; Endimiani, Andrea; Perreten, Vincent; Schuller, Simone (2021). Duration of carriage of multidrug-resistant bacteria in dogs and cats in veterinary care and co-carriage with their owners. One health, 13(100322), p. 100322. Elsevier 10.1016/j.onehlt.2021.100322

Moser, Aline I.; Campos-Madueno, Edgar I.; Sendi, Parham; Perreten, Vincent; Keller, Peter M.; Ramette, Alban; Endimiani, Andrea (2021). Repatriation of a patient with COVID-19 contributed to the importation of an emerging carbapenemase producer. Journal of global antimicrobial resistance, 27, pp. 267-272. Elsevier 10.1016/j.jgar.2021.10.012

Casanova, Carlo; Küffer, Marianne; Leib, Stephen L.; Hilty, Markus (2021). Re-emergence of invasive pneumococcal disease (IPD) and increase of serotype 23B after easing of COVID-19 measures, Switzerland, 2021. Emerging microbes & infections, 10(1), pp. 2202-2204. Taylor & Francis 10.1080/22221751.2021.2000892

Gisler, Amanda; Korten, Insa; de Hoogh, Kees; Vienneau, Danielle; Frey, Urs; Decrue, Fabienne; Gorlanova, Olga; Soti, Andras; Hilty, Markus; Latzin, Philipp; Usemann, Jakob (2021). Associations of air pollution and greenness with the nasal microbiota of healthy infants: A longitudinal study. Environmental research, 202, p. 111633. Elsevier 10.1016/j.envres.2021.111633

Moor, Matthias B.; Suter-Riniker, Franziska; Horn, Michael P.; Aeberli, Daniel; Amsler, Jennifer; Möller, Burkhard; Njue, Linet M.; Medri, Cesare; Angelillo-Scherrer, Anne; Borradori, Luca; Radonjic-Hoesli, Susanne; Seyed Jafari, S. Morteza; Chan, Andrew; Hoepner, Robert; Bacher, Vera Ulrike; Mani, Laila-Yasmin; Iype, Joseena Mariam; Hirzel, Cédric; Maurer, Britta and Sidler, Daniel (2021). Humoral and cellular responses to mRNA vaccines against SARS-CoV-2 in patients with a history of CD20 B-cell-depleting therapy (RituxiVac): an investigator-initiated, single-centre, open-label study. The Lancet. Rheumatology, 3(11), e789-e797. Elsevier 10.1016/S2665-9913(21)00251-4

Renggli, L.; Gasser, M.; Plüss-Suard, C.; Kronenberg, A. (2021). Consumption of anti-meticillin-resistant Staphylococcus aureus antibiotics in Swiss hospitals is associated with antibiotic stewardship measures. The journal of hospital infection, 117, pp. 165-171. Elsevier 10.1016/j.jhin.2021.08.019

Müller, Seraina L C; Morgenstern, Mario; Kuehl, Richard; Muri, Thaddaeus; Kalbermatten, Daniel F; Clauss, Martin; Schaefer, Dirk J; Sendi, Parham; Osinga, Rik (2021). Soft-tissue reconstruction in lower-leg fracture-related infections: An orthoplastic outcome and risk factor analysis. Injury - international journal of the care of the injured, 52(11), pp. 3489-3497. Elsevier 10.1016/j.injury.2021.07.022

Barnsteiner, Stefanie; Baty, Florent; Albrich, Werner C; Babouee Flury, Baharak; Gasser, Michael; Plüss-Suard, Catherine; Schlegel, Matthias; Kronenberg, Andreas; Kohler, Philipp (2021). Antimicrobial resistance and antibiotic consumption in intensive care units, Switzerland, 2009 to 2018. Eurosurveillance, 26(46) European Centre for Disease Prevention and Control 10.2807/1560-7917.ES.2021.26.46.2001537

Peker, Nilay; Schuele, Leonard; Kok, Nienke; Terrazos, Miguel; Neuenschwander, Stefan M.; de Beer, Jessica; Akkerman, Onno; Peter, Silke; Ramette, Alban; Merker, Matthias; Niemann, Stefan; Couto, Natacha; Sinha, Bhanu; Rossen, John Wa (2021). Evaluation of whole-genome sequence data analysis approaches for short- and long-read sequencing of Mycobacterium tuberculosis. Microbial genomics, 7(11) Microbiology Society 10.1099/mgen.0.000695

Sendi, Parham; Baldan, Rossella; Thierstein, Marc; Widmer, Nadja; Gowland, Peter; Gahl, Brigitta; Büchi, Annina Elisabeth; Güntensperger, Dominik; Wider, Manon; Blum, Manuel Raphael; Tinguely, Caroline; Maillat, Cédric; Theel, Elitza S; Berbari, Elie; Dijkman, Ronald; Niederhauser, Christoph (2021). A multidimensional cross-sectional analysis of COVID-19 seroprevalence among a police officer cohort: The PoliCOV-19 study. Open Forum Infectious Diseases, 8(12), ofab524. Oxford University Press 10.1093/ofid/ofab524

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Schmid-Siegert, Emanuel; Richard, Sophie; Luraschi, Amanda; Mühlethaler, Konrad; Pagni, Marco; Hauser, Philippe M (2021). Expression pattern of the Pneumocystis jirovecii major surface glycoprotein superfamily in patients with pneumonia. The journal of infectious diseases, 223(2), pp. 310-318. Oxford University Press 10.1093/infdis/jiaa342

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Moser, Aline I.; Kuenzli, Esther; Büdel, Thomas; Campos-Madueno, Edgar I.; Bernasconi, Odette J.; DeCrom-Beer, Susan; Jakopp, Barbara; Mohammed, Ali Haji; Hassan, Nadir Khatib; Fehr, Jan; Zinsstag, Jakob; Hatz, Christoph; Endimiani, Andrea (2021). Travellers returning from the island of Zanzibar colonized with MDR Escherichia coli strains: assessing the impact of local people and other sources. The journal of antimicrobial chemotherapy, 76(2), pp. 330-337. Oxford University Press 10.1093/jac/dkaa457

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Moor, Julia; Wüthrich, Tsering; Aebi, Susanne; Mostacci, Nadezda; Overesch, Gudrun; Oppliger, Anne; Hilty, Markus (2021). Influence of pig farming on human Gut Microbiota: role of airborne microbial communities. Gut microbes, 13(1), pp. 1-13. Taylor & Francis Group 10.1080/19490976.2021.1927634

Wang, Junhua; von Gunten, Stephan; Beldi, Guido; Grandgirard, Denis; Leib, Stephen L.; Gottstein, Bruno (2021). Digest the Sugar, Kill the Parasite: A New Experimental Concept in Treating Alveolar Echinococcosis. Pharmacology, 106(1-2), pp. 3-8. Karger 10.1159/000509355

Campos-Madueno, Edgar I.; Gmuer, Christian; Risch, Martin; Bodmer, Thomas; Endimiani, Andrea (2021). Characterization of a new blaVIM-1-carrying IncN2 plasmid from an Enterobacter hormaechei subsp. steigerwaltii. Journal of global antimicrobial resistance, 24, pp. 325-327. Elsevier 10.1016/j.jgar.2021.01.017

Stergiotis, Melina; Ammann, Roland A.; Droz, Sara; Koenig, Christa; Agyeman, Philipp Kwame Abayie (2021). Pediatric fever in neutropenia with bacteremia-Pathogen distribution and in vitro antibiotic susceptibility patterns over time in a retrospective single-center cohort study. PLoS ONE, 16(2), e0246654. Public Library of Science 10.1371/journal.pone.0246654

Veiga, Inês B.; Hahn, Kerstin; Wenker, Christian; Wyss, Fabia; Mühlethaler, Konrad; Posthaus, Horst; Janzen, Jan (2021). Pulmonary Artery Aneurysm in a Greater Flamingo (Phoenicopterus roseus) Associated with Aspergillus fumigatus Infection. Journal of comparative pathology, 184, pp. 19-23. Elsevier 10.1016/j.jcpa.2021.01.006

Werren, Joel P.; Troxler, Lukas J.; Oyewole, Oluwaseun Rume-Abiola; Ramette, Alban; Brugger, Silvio D.; Bruggmann, Rémy; van der Linden, Mark; Nahm, Moon H.; Gjuroski, Ilche; Casanova, Carlo; Furrer, Julien; Hilty, Markus (2021). Carbon Source-Dependent Changes of the Structure of Streptococcus pneumoniae Capsular Polysaccharide with Serotype 6F. International journal of molecular sciences, 22(9) MDPI 10.3390/ijms22094580

Friedli, Christoph; Diem, Lara; Hammer, Helly; Kamber, Nicole; Suter-Riniker, Franziska; Leib, Stephen; Chan, Andrew; Hirzel, Cédric; Hoepner, Robert; Salmen, Anke (2021). Negative SARS-CoV2-antibodies after positive COVID-19-PCR nasopharyngeal swab in patients treated with anti-CD20 therapies. Therapeutic advances in neurological disorders, 14, p. 17562864211016641. Sage 10.1177/17562864211016641

Abbühl, Mariesol; Risch, Martin; Kronenberg, Andreas (2021). COVID-19-Seroprävalenz-Studie bei Mitarbeitenden einer städtischen Hausarztpraxis (In Press). Primary and hospital care: allgemeine innere Medizin, 21(6), pp. 183-187. EMH Schweizerischer Ärzteverlag 10.4414/phc-d.2021.10353

Moser, Aline I.; Kuenzli, Esther; Campos-Madueno, Edgar I.; Büdel, Thomas; Rattanavong, Sayaphet; Vongsouvath, Manivanh; Hatz, Christoph; Endimiani, Andrea (2021). Antimicrobial-Resistant Escherichia coli Strains and Their Plasmids in People, Poultry, and Chicken Meat in Laos. Frontiers in Microbiology, 12 Frontiers 10.3389/fmicb.2021.708182

Erni, Silvia T.; Gill, John C.; Palaferri, Carlotta; Fernandes, Gabriella; Buri, Michelle; Lazarides, Katherine; Grandgirard, Denis; Edge, Albert S. B.; Leib, Stephen; Roccio, Marta (2021). Hair Cell Generation in Cochlear Culture Models Mediated by Novel γ-Secretase Inhibitors. Frontiers in cell and developmental biology, 9(2256) Frontiers 10.3389/fcell.2021.710159

Damonti, Lauro; Kronenberg, Andreas; Marschall, Jonas; Jent, Philipp; Sommerstein, Rami; De Kraker, Marlieke E. A.; Harbarth, Stephan; Gasser, Michael; Buetti, Niccolò (2021). The effect of the COVID-19 pandemic on the epidemiology of positive blood cultures in Swiss intensive care units: a nationwide surveillance study. Critical care, 25(1), p. 403. BioMed Central 10.1186/s13054-021-03814-z

Heinrich, Simon Martin; Sendi, Parham; Clauss, Martin (2021). Methylene blue for the diagnosis of a sinus tract in periprosthetic knee joint infection. Journal of bone and joint infection, 6(9), pp. 423-424. Ivyspring International Publisher 10.5194/jbji-6-423-2021

Valente, Luca G.; Pitton, Melissa; Fürholz, Monika; Oberhaensli, Simone; Bruggmann, Rémy; Leib, Stephen L.; Jakob, Stephan M.; Resch, Grégory; Que, Yok-Ai; Cameron, David R. (2021). Isolation and characterization of bacteriophages from the human skin microbiome that infect Staphylococcus epidermidis. FEMS Microbes, 2 Oxford University Press 10.1093/femsmc/xtab003

Borcard, Loïc; Gempeler, Sonja; Terrazos Miani, Miguel A.; Baumann, Christian; Grädel, Carole; Dijkman, Ronald; Suter-Riniker, Franziska; Leib, Stephen L; Bittel, Pascal; Neuenschwander, Stefan; Ramette, Alban (2021). Investigating the biological and technical origins of unknown bases in the S region of the SARS-CoV-2 Delta variant genome sequences (medRxiv). Cold Spring Harbor Laboratory 10.1101/2021.09.09.21262951

Akello, Joyce Odeke; Kamgang, Richard; Barbani, Maria Teresa; Suter-Riniker, Franziska; Aebi, Christoph; Beuret, Christian; Paris, Daniel H.; Leib, Stephen L.; Ramette, Alban (2021). Genomic analyses of human adenoviruses unravel novel recombinant genotypes associated with severe infections in pediatric patients (medRxiv). Cold Spring Harbor Laboratory 10.1101/2021.08.01.21261368

Moser, Aline I.; Keller, Peter M.; Campos-Madueno, Edgar I.; Poirel, Laurent; Nordmann, Patrice; Endimiani, Andrea (2021). A Patient With Multiple Carbapenemase Producers Including an Unusual Citrobacter sedlakii Hosting an IncC blaNDM-1- and armA-carrying Plasmid. Pathogens and Immunity, 6(2), pp. 119-134. Case Western Reserve University, Cleveland, OH 10.20411/pai.v6i2.482

Theurillat, Regula; Stirnimann, Guido; Wenker, Christian; Hoby, Stefan; Thormann, Wolfgang (2021). Aspects of albendazole metabolism in western lowland gorillas (Gorilla gorilla gorilla) compared to humans and other species assessed by HPLC, LC-MS, and chiral electrokinetic chromatography. Separation science plus, 4(9), pp. 347-356. Wiley 10.1002/sscp.202100024

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Prazák, Josef; Valente, Luca; Iten, Manuela; Grandgirard, Denis; Leib, Stephen; Jakob, Stephan M.; Hänggi, Matthias; Que, Yok-Ai; Cameron, David R. (2020). Nebulized Bacteriophages for Prophylaxis of Experimental Ventilator-Associated Pneumonia Due to Methicillin-Resistant Staphylococcus aureus. Critical care medicine, 48(7), pp. 1042-1046. Wolters Kluwer Health 10.1097/CCM.0000000000004352

Köhsler, Martina; Leitsch, David; Müller, Norbert; Walochnik, Julia (2020). Validation of reference genes for the normalization of RT-qPCR gene expression in Acanthamoeba spp. Scientific Reports, 10(1), p. 10362. Nature Publishing Group 10.1038/s41598-020-67035-0

Egli, Adrian; Battegay, Manuel; Büchler, Andrea C; Bühlmann, Peter; Calandra, Thierry; Eckert, Philippe; Furrer, Hansjakob; Greub, Gilbert; Jakob, Stephan M.; Kaiser, Laurent; Leib, Stephen L.; Marsch, Stephan; Meinshausen, Nicolai; Pagani, Jean-Luc; Pugin, Jerome; Rätsch, Gunnar; Schrenzel, Jacques; Schüpbach, Reto; Siegemund, Martin; Zamboni, Nicola; ... (2020). SPHN/PHRT: Forming a Swiss-Wide Infrastructure for Data-Driven Sepsis Research. Studies in health technology and informatics, 270, pp. 1163-1167. IOS Press 10.3233/SHTI200346

Tran, Thi Nhu Thao; Labroussaa, Fabien; Ebert, Nadine; V'kovski, Philip; Stalder, Hanspeter; Portmann, Jasmine; Kelly, Jenna; Steiner, Silvio; Holwerda, Melle; Kratzel, Annika; Gultom, Mitra; Schmied, Kimberly; Laloli, Laura; Hüsser, Linda; Wider, Manon; Pfaender, Stephanie; Hirt, Dagny; Cippà, Valentina; Crespo-Pomar, Silvia; Schröder, Simon; ... (2020). Rapid reconstruction of SARS-CoV-2 using a synthetic genomics platform. Nature, 582(7813), pp. 561-565. Springer Nature 10.1038/s41586-020-2294-9

Eiden, Sebastian; Dijkman, Ronald; Zell, Roland; Fuchs, Jonas; Kochs, Georg (2020). Using a mouse-adapted A/HK/01/68 influenza virus to analyse the impact of NS1 evolution in codons 196 and 231 on viral replication and virulence. Journal of general virology, 101(6), pp. 587-598. Society for General Microbiology 10.1099/jgv.0.001422

Guglielmetti, S; Jaccard, C. M.; Mühlethaler, K.; Bigler, A.; Springe, D.; Ebnöther, L.; Delgado, M (2020). Delayed Diagnosis of a Diffuse Invasive Gastrointestinal Aspergillosis in an Immunocompetent Patient. Case reports in critical care, 2020, p. 3601423. Hindawi 10.1155/2020/3601423

Akello, Joyce Odeke; Leib, Stephen L.; Engler, Olivier; Beuret, Christian (2020). Evaluation of Viral RNA Recovery Methods in Vectors by Metagenomic Sequencing. Viruses, 12(5) MDPI 10.3390/v12050562

Osinga, Rik; Eggimann, Maurice Michel; Lo, Steven John; Kühl, Richard; Lunger, Alexander; Ochsner, Peter Emil; Sendi, Parham; Clauss, Martin; Schaefer, Dirk Johannes (2020). Orthoplastics in Periprosthetic Joint Infection of the Knee: Treatment Concept for Composite Soft-tissue Defect with Extensor Apparatus Deficiency. Journal of bone and joint infection, 5(3), pp. 160-171. Ivyspring International Publisher 10.7150/jbji.47018

Meyer, Patricia; Grandgirard, Denis; Lehner, Marika; Haenggi, Matthias; Leib, Stephen (2020). Grafted neural progenitor cells persist in the injured site and differentiate neuronally in a rodent model of cardiac arrest-induced global brain ischemia. Stem cells and development, 29(9), pp. 574-585. Mary Ann Liebert 10.1089/scd.2019.0190

Bossart, Simon; Mühlethaler, Konrad; Garzoni, Christian; Furrer, Hansjakob (2020). Is real time PCR preferable to the direct immunofluorescence in the diagnosis of Pneumocystis jirovecii pneumonia in HIV-infected patients? BMC research notes, 13(1), p. 235. Biomed Central 10.1186/s13104-020-05075-5

Machado, Ricardo A. R.; Thönen, Lisa; Arce, Carla C. M.; Theepan, Vanitha; Prada, Fausto; Wüthrich, Daniel; Robert, Christelle A. M.; Vogiatzaki, Evangelia; Shi, Yi-Ming; Schaeren, Olivier P.; Notter, Matheus; Bruggmann, Rémy; Hapfelmeier, Siegfried; Bode, Helge B.; Erb, Matthias (2020). Engineering bacterial symbionts of nematodes improves biocontrol potential of the western corn rootworm. Nature biotechnology, 38(5), pp. 600-608. Nature America 10.1038/s41587-020-0419-1

Blockus, Sebastian; Sake, Svenja M; Wetzke, Martin; Grethe, Christina; Graalmann, Theresa; Pils, Marina; Le Goffic, Ronan; Galloux, Marie; Prochnow, Hans; Rox, Katharina; Hüttel, Stephan; Rupcic, Zeljka; Wiegmann, Bettina; Dijkman, Ronald; Rameix-Welti, Marie-Anne; Eléouët, Jean-François; Duprex, W Paul; Thiel, Volker; Hansen, Gesine; Brönstrup, Mark; ... (2020). Labyrinthopeptins as virolytic inhibitors of respiratory syncytial virus cell entry. Antiviral research, 177, p. 104774. Elsevier 10.1016/j.antiviral.2020.104774

Boubaker, Ghalia; Strempel, Sebastian; Hemphill, Andrew; Müller, Norbert; Wang, Junhua; Gottstein, Bruno; Spiliotis, Markus (2020). Regulation of hepatic microRNAs in response to early stage Echinococcus multilocularis egg infection in C57BL/6 mice. PLoS neglected tropical diseases, 14(5), e0007640. Public Library of Science 10.1371/journal.pntd.0007640

Campero, Lucia Maria; Schott, Franziska; Gottstein, Bruno; Deplazes, Peter; Sidler, Xaver; Basso, Walter (2020). Detection of antibodies to Toxoplasma gondii in oral fluid from pigs. International journal for parasitology, 50(5), pp. 349-355. Elsevier 10.1016/j.ijpara.2019.11.002

Pfister, Simona; Schären, Olivier P.; Beldi, Luca; Printz, Andrea; Notter, Matheus D.; Mukherjee, Mohana; Li, Hai; Limenitakis, Julien P.; Werren, Joel P.; Tandon, Disha; Cuenca Vera, Miguelangel; Hagemann, Stefanie Claudia; Uster, Stephanie S.; Terrazos, Miguel A.; Gomez de Agüero, Mercedes; Schürch, Christian M.; Matos Coelho, Fernanda; Curtiss, Roy; Slack, Emma; Balmer, Maria L.; ... (2020). Uncoupling of invasive bacterial mucosal immunogenicity from pathogenicity. Nature Communications, 11(1), p. 1978. Springer Nature 10.1038/s41467-020-15891-9

Endimiani, Andrea; Bernasconi, Odette Joëlle; Büdel, Thomas; Campos-Madueno, Edgar I.; Kuenzli, Esther; Hatz, Christoph; Carattoli, Alessandra (2020). Whole-genome characterization of a Shewanella algae strain co-harboring blaCTX-M-15 and armA genes on a novel IncC plasmid. Antimicrobial agents and chemotherapy, 64(5) American Society for Microbiology 10.1128/AAC.00267-20

Knapp, Jenny; Gottstein, Bruno; Bretagne, Stéphane; Bart, Jean-Mathieu; Umhang, Gérald; Richou, Carine; Bresson-Hadni, Solange; Millon, Laurence (2020). Genotyping Echinococcus multilocularis in Human Alveolar Echinococcosis Patients: An EmsB Microsatellite Analysis. Pathogens, 9(4) MDPI AG 10.3390/pathogens9040282

Akello, Joyce Odeke; Kamgang, Richard; Barbani, Maria Teresa; Suter-Riniker, Franziska; Leib, Stephen L; Ramette, Alban (2020). Epidemiology of Human Adenoviruses: A 20-Year Retrospective Observational Study in Hospitalized Patients in Bern, Switzerland. Clinical epidemiology, 12, pp. 353-366. Dove Medical Press 10.2147/CLEP.S246352

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Kümin, Daniel; Gsell Albert, Monika; Weber, Benjamin; Summermatter, Kathrin (2020). The Hitchhiker’s Guide to Hydrogen Peroxide Fumigation, Part 2: Verifying and Validating Hydrogen Peroxide Fumigation Cycles. Applied biosafety, p. 153567602092109. Sage 10.1177/1535676020921099

Caliaro, Oliver; Barbani, Maria Teresa; Klenja, Shkipe; Morfin, Florence; Frobert, Emilie; Gorgievski, Meri; Steinlin-Schopfer, Jacqueline; Suter-Riniker, Franziska (2020). Phenotypic testing of patient herpes simplex virus type 1 and 2 isolates for acyclovir resistance by a novel method based on real-time cell analysis. Journal of clinical virology, 125(104303), p. 104303. Elsevier 10.1016/j.jcv.2020.104303

Neuenschwander, Stefan Moritz; Terrazos Miani, Miguel Angel; Amlang, Heiko; Perroulaz, Carmen; Bittel, Pascal; Casanova, Carlo; Droz, Sara; Flandrois, Jean-Pierre; Leib, Stephen L.; Suter-Riniker, Franziska; Ramette, Alban (2020). A Sample-to-Report Solution for Taxonomic Identification of Cultured Bacteria in the Clinical Setting Based on Nanopore Sequencing. Journal of clinical microbiology, 58(6) American Society for Microbiology 10.1128/JCM.00060-20

Endimiani, Andrea; Brilhante, Michael; Bernasconi, Odette J.; Perreten, Vincent; Schmidt, Janne S; Dazio, Valentina; Nigg, Aurélien; Gobeli Brawand, Stefanie; Kuster, Stefan P; Schuller, Simone; Willi, Barbara (2020). Employees of Swiss veterinary clinics colonized with epidemic clones of carbapenemase-producing Escherichia coli. Journal of antimicrobial chemotherapy, 75(3), pp. 766-768. Oxford University Press 10.1093/jac/dkz470

Brackmann, Maximilian; Leib, Stephen; Tonolla, Mauro; Schürch, Nadia; Wittwer, Matthias (2020). Antimicrobial resistance Classification using MALDI-TOF-MS is not that easy: Lessons from vancomycin-resistant Enterococcus faecium. Clinical microbiology and infection, 26(3), pp. 391-393. Elsevier 10.1016/j.cmi.2019.10.027

Dąbrowska, Joanna; Keller, Irene; Karamon, Jacek; Kochanowski, Maciej; Gottstein, Bruno; Cencek, Tomasz; Frey, Caroline F.; Müller, Norbert (2020). Whole genome sequencing of a feline strain of Tritrichomonas foetus reveals massive genetic differences to bovine and porcine isolates. International journal for parasitology, 50(3), pp. 227-233. Elsevier 10.1016/j.ijpara.2019.12.007

Zhou, Hao; Møhlenberg, Michelle; Terczyńska-Dyla, Ewa; Winther, Kasper Grønbjerg; Hansen, Nanna Hougaard; Vad-Nielsen, Johan; Laloli, Laura; Dijkman, Ronald; Nielsen, Anders Lade; Gad, Hans Henrik; Hartmann, Rune (2020). The IFNL4 gene is a non-canonical interferon gene with a unique but evolutionarily conserved regulation. Journal of virology, 94(5) American Society for Microbiology 10.1128/JVI.01535-19

Clauss, Martin; Hunkeler, Christof; Manzoni, Isabella; Sendi, Parham (2020). Debridement, Antibiotics and Implant Retention for Hip Periprosthetic Joint Infection: Analysis of Implant Survival after Cure of Infection. Journal of bone and joint infection, 5(1), pp. 35-42. Ivyspring International Publisher 10.7150/jbji.40924

Kwambana-Adams, Brenda Anna; Mulholland, E. Kim; Satzke, Catherine (2020). State-of-the-art in the pneumococcal field: Proceedings of the 11 th International Symposium on Pneumococci and Pneumococcal Diseases (ISPPD-11). Pneumonia, 12, p. 2. Griffith University ePress 10.1186/s41479-019-0064-y

Hodel, M.; Lejon Crottet, S.; Raio, L.; Zimmermann, R.; Lapaire, O.; Canellini, G.; Henny, C.; Niederhauser, C.; Waldvogel, S.; Fontana, S. (2020). Empfehlungen zur Anti-D Immunglobulin-Gabe in der Schwangerschaft (Anti-D-Prophylaxe). Gynäkologie(1), pp. 25-28. Rosenfluh Publikationen

Müller, Annelies; Salmen, Anke; Aebi, Susanne; de Gouveia, Linda; von Gottberg, Anne; Hathaway, Lucy J. (2020). Pneumococcal serotype determines growth and capsule size in human cerebrospinal fluid. BMC microbiology, 20(1), p. 16. BioMed Central 10.1186/s12866-020-1700-7

Lo Priore, Elia; Livermore, David M; Buetti, Niccolo; Jent, Philipp; Pelzer, Niklas; Casanova, Carlo; Furrer, Hansjakob; Babouee Flury, Baharak (2020). Successful Treatment of Acute Prostatitis Caused by Multidrug-Resistant Escherichia coli With Tigecycline Monotherapy. Open Forum Infectious Diseases, 7(1), ofz551. Oxford University Press 10.1093/ofid/ofz551

Sendi, Parham; Dräger, Sarah; Batzer, Bettina; Walser, Susanne; Dangel, Marc; Widmer, Andreas F (2020). The financial burden of an influenza outbreak in a small rehabilitation centre. Influenza and other respiratory viruses, 14(1), pp. 72-76. Wiley 10.1111/irv.12696

Diez Bernal, Sabina; Studer, Nicole; Thormann, Wolfgang; Spadavecchia, Claudia; Levionnois, Olivier (2020). Pharmacokinetic-pharmacodynamic modelling of the antinociceptive effect of a romifidine infusion in standing horses. Veterinary anaesthesia and analgesia, 47(1), pp. 129-136. Elsevier 10.1016/j.vaa.2019.06.010

Plüss-Suard, Catherine; Niquille, Anne; Héquet, Delphine; Krähenbühl, Séverine; Pichon, Renaud; Zanetti, Giorgio; Bugnon, Olivier; Petignat, Christiane (2020). Decrease in Antibacterial Use and Facility-Level Variability After the Introduction of Guidelines and Implementation of Physician-Pharmacist-Nurse Quality Circles in Swiss Long-term Care Facilities. Journal of the American Medical Directors Association, 21(1), pp. 78-83. Elsevier 10.1016/j.jamda.2019.05.016

Egli, Adrian; Koch, Daniel; Danuser, Jürg; Hendriksen, Rene S; Driesen, Susanne; Schmid, Diana Coman; Neher, Richard; Mäusezahl, Mirjam; Seth-Smith, Helena Mb; Bloemberg, Guido; Tschudin-Sutter, Sarah; Endimiani, Andrea; Perreten, Vincent; Greub, Gilbert; Schrenzel, Jacques; Stephan, Roger (2020). Symposium report: One Health meets sequencing. Microbes and infection, 22(1), pp. 1-7. Elsevier Masson SAS 10.1016/j.micinf.2019.07.004

Siemens, Nikolai; Oehmcke-Hecht, Sonja; Hoßmann, Jörn; Skorka, Sebastian B.; Nijhuis, Roel H.T.; Ruppen, Corinne; Skrede, Steinar; Rohde, Manfred; Schultz, Daniel; Lalk, Michael; Itzek, Andreas; Pieper, Dietmar H.; van den Bout, Christiaan J.; Claas, Eric C.J.; Kuijper, Ed J.; Mauritz, Robert; Sendi, Parham; Wunderink, Herman F.; Norrby-Teglund, Anna (2020). Prothrombotic and Proinflammatory Activities of the β-Hemolytic Group B Streptococcal Pigment. Journal of innate immunity, 12(4), pp. 291-303. Karger 10.1159/000504002

Kaiser-Thom, S.; Hilty, Markus; Gerber, V. (2020). Effects of hypersensitivity disorders and environmental factors on the equine intestinal microbiota. The veterinary quarterly, 40(1), pp. 97-107. Taylor & Francis 10.1080/01652176.2020.1745317

Bernasconi, Odette J.; Campos-Madueno, Edgar I.; Donà, Valentina; Perreten, Vincent; Carattoli, Alessandra; Endimiani, Andrea (2020). Investigating the Use of Bacteriophages as New Decolonization Strategy for Intestinal Carriage of CTX-M-15-producing ST131 Escherichia coli: An In Vitro Continuous Culture System Model. Journal of global antimicrobial resistance, 22, pp. 664-671. Elsevier 10.1016/j.jgar.2020.05.018

Schmidt, Janne S.; Kuster, Stefan P.; Nigg, Aurélien; Dazio, Valentina; Brilhante, Michael; Rohrbach, Helene; Bernasconi, Odette J.; Büdel, Thomas; Campos-Madueno, Edgar I.; Gobeli Brawand, Stefanie; Schuller, Simone; Endimiani, Andrea; Perreten, Vincent; Willi, Barbara (2020). Poor infection prevention and control standards are associated with environmental contamination with carbapenemase-producing Enterobacterales and other multidrug-resistant bacteria in Swiss companion animal clinics. Antimicrobial resistance and infection control, 9(1) BioMed Central 10.1186/s13756-020-00742-5

Bleichenbacher, Stephanie; Stevens, Marc J.A.; Zurfluh, Katrin; Perreten, Vincent; Endimiani, Andrea; Stephan, Roger; Nüesch-Inderbinen, Magdalena (2020). Environmental dissemination of carbapenemase-producing enterobacteriaceae in rivers in Switzerland. Environmental pollution, 265, p. 115081. Elsevier Science 10.1016/j.envpol.2020.115081

Campos-Madueno, Edgar I.; Bernasconi, Odette J.; Moser, Aline I.; Keller, Peter M.; Luzzaro, Francesco; Maffioli, Carola; Bodmer, Thomas; Kronenberg, Andreas; Endimiani, Andrea (2020). Rapid Increase of CTX-M-Producing Shigella sonnei Isolates in Switzerland: Spread of Common Plasmids and International Clones. Antimicrobial agents and chemotherapy, 64(10) American Society for Microbiology 10.1128/AAC.01057-20

Le, Ngoc Dung; Muri, Lukas; Grandgirard, Denis; Kuhle, Jens; Leppert, David; Leib, Stephen L. (2020). Evaluation of neurofilament light chain in the cerebrospinal fluid and blood as a biomarker for neuronal damage in experimental pneumococcal meningitis. Journal of neuroinflammation, 17(1), p. 293. BioMed Central 10.1186/s12974-020-01966-3

Wang, Junhua; Marreros, Nelson; Rufener, Reto; Hemphill, Andrew; Gottstein, Bruno; Lundström-Stadelmann, Britta (2020). Short communication: Efficacy of albendazole in Echinococcus multilocularis-infected mice depends on the functional immunity of the host. Experimental parasitology, 219, p. 108013. Elsevier 10.1016/j.exppara.2020.108013

Zbinden, Florian R.; De Ste Croix, Megan; Grandgirard, Denis; Haigh, Richard D; Vacca, Irene; Zamudio, Roxana; Goodall, Emily C A; Stephan, Roger; Oggioni, Marco R; Leib, Stephen L. (2020). Pathogenic Differences of Type 1 Restriction-Modification Allele Variants in Experimental Listeria monocytogenes Meningitis. Frontiers in cellular and infection microbiology, 10, p. 590657. Frontiers 10.3389/fcimb.2020.590657

Pan, Steven D.; Grandgirard, Denis; Leib, Stephen L. (2020). Adjuvant Cannabinoid Receptor Type 2 Agonist Modulates the Polarization of Microglia Towards a Non-Inflammatory Phenotype in Experimental Pneumococcal Meningitis. Frontiers in cellular and infection microbiology, 10 Frontiers 10.3389/fcimb.2020.588195

Rosser, Christian; Sager, Fritz; Leib, Stephen L. (2020). Six Recommendations to Build Legitimacy for Translational Research Organizations. Frontiers in medicine, 7, p. 586177. Frontiers 10.3389/fmed.2020.586177

Kümin, Daniel; Gsell Albert, Monika; Weber, Benjamin; Summermatter, Kathrin (2020). The Hitchhiker’s Guide to Hydrogen Peroxide Fumigation, Part 1: Introduction to Hydrogen Peroxide Fumigation. Applied biosafety, 25(4), pp. 214-224. Sage 10.1177/1535676020921007

Gultom, Mitra; Laloli, Laura; Dijkman, Ronald (2020). Well-Differentiated Primary Mammalian Airway Epithelial Cell Cultures. In: Maier, Helena J.; Bickerton, Erica (eds.) Coronaviruses. Methods and Protocols. Methods in Molecular Biology: Vol. 2203 (pp. 119-134). Humana, New York, NY 10.1007/978-1-0716-0900-2_10

Vuitton, Dominique A; McManus, Donald P; Rogan, Michael T; Romig, Thomas; Gottstein, Bruno; Naidich, Ariel; Tuxun, Tuerhongjiang; Wen, Hao; Menezes da Silva, Antonio (2020). International consensus on terminology to be used in the field of echinococcoses. Parasite, 27(41), p. 41. EDP Sciences 10.1051/parasite/2020024

2019

Kuenzli, Esther; Büdel, Thomas; Bernasconi, Odette J.; Schlagenhauf, Patricia; Florek, Peter; Gültekin, Nejla; Hatz, Christoph; Endimiani, Andrea (2019). Intestinal Colonization with Multidrug-Resistant Enterobacteriaceae: Screening of Swiss Military Deployed to Kosovo. Journal of global antimicrobial resistance, 19, pp. 93-95. Elsevier 10.1016/j.jgar.2019.08.027

Plate, Andreas; Kronenberg, Andreas; Risch, Martin; Mueller, Yolanda; Di Gangi, Stefania; Rosemann, Thomas; Senn, Oliver (2019). Active surveillance of antibiotic resistance patterns in urinary tract infections in primary care in Switzerland. Infection, 47(6), pp. 1027-1035. Springer-Medizin-Verlag 10.1007/s15010-019-01361-y

Perrodin, Stéphanie; Walti, Laura; Gottstein, Bruno; Kim-Fuchs, Corina; Candinas, Daniel; Banz, Vanessa (2019). Fasciola hepatica in a country of low incidence: a tricky diagnosis. Hepatobiliary surgery and nutrition, 8(6), pp. 597-603. AME Publishing Company 10.21037/hbsn.2019.04.02

Endimiani, Andrea (22 November 2019). MDROs: molecular diagnostic tools (Unpublished). In: Symposium Antibiotic Resistance StAR. Bern. 22.11.2019.

Vasoo, Shawn; Chan, Monica; Sendi, Parham; Berbari, Elie (2019). The Value of Ortho-ID Teams in Treating Bone and Joint Infections. Journal of bone and joint infection, 4(6), pp. 295-299. Ivyspring International Publisher 10.7150/jbji.41663

Troxler, Lukas J.; Werren, Joel P.; Schaffner, Thierry O.; Mostacci, Nadezda; Vermathen, Peter; Vermathen, Martina; Wüthrich, Daniel; Simillion, Cedric; Brugger, Silvio D.; Bruggmann, Rémy; Hathaway, Lucy J.; Furrer, Julien; Hilty, Markus (2019). Carbon source regulates polysaccharide capsule biosynthesis in Streptococcus pneumoniae. Journal of biological chemistry, 294(46), pp. 17224-17238. American Society for Biochemistry and Molecular Biology 10.1074/jbc.RA119.010764

Wasimuddin, Wasimuddin; Schlaeppi, Klaus; Ronchi, Francesca; Leib, Stephen L.; Erb, Matthias; Ramette, Alban (15 November 2019). Evaluation of primer pairs for microbiome profiling across a food chain from soils to humans within the One Health framework (bioRxiv). Cold Spring Harbor Laboratory 10.1101/843144

Prazak, Josef; Iten, Manuela; Cameron, David Robert; Save, Jonathan Florian; Grandgirard, Denis; Resch, Gregory; Göpfert, Christine; Leib, Stephen L.; Takala, Jukka; Jakob, Stephan; Que, Yok-Ai; Hänggi, Matthias (2019). Bacteriophages Improve Outcome in Experimental Staphylococcus Aureus Ventilator Associated Pneumonia. American journal of respiratory and critical care medicine, 200(9), pp. 1126-1133. American Lung Association 10.1164/rccm.201812-2372OC

Hathaway, Lucy J. (2019). New virulence factors identified in pneumococcal meningtitis. Trends in microbiology, 27(11), pp. 895-896. Elsevier Current Trends 10.1016/j.tim.2019.08.008

Asner, Sandra A; Agyeman, Philipp; Gradoux, Eugénie; Posfay-Barbe, Klara M; Heininger, Ulrich; Giannoni, Eric; Crisinel, Pierre A; Stocker, Martin; Bernhard-Stirnemann, Sara; Niederer-Loher, Anita; Kahlert, Christian R; Hasters, Paul; Relly, Christa; Baer, Walter; Aebi, Christoph; Schlapbach, Luregn Jan; Berger, Christoph (2019). Burden of Streptococcus pneumoniae sepsis in children after introduction of pneumococcal conjugate vaccines - a prospective population-based cohort study. Clinical infectious diseases, 69(9), pp. 1574-1580. The University of Chicago Press 10.1093/cid/ciy1139

Cameron, David R.; Ramette, Alban; Prazak, Josef; Entenza, José; Hänggi, Matthias; Que, Yok-Ai; Resch, Grégory (2019). Draft Genome Sequence of Methicillin-Resistant Staphylococcus aureus Strain AW7, Isolated from a Patient with Bacteremia. Microbiology resource announcements, 8(40) American Society for Microbiology 10.1128/MRA.00806-19

Büdel, Thomas; Kuenzli, Esther; Clément, Mathieu; Bernasconi, Odette J.; Fehr, Jan; Mohammed, Ali Haji; Hassan, Nadir Khatib; Zinsstag, Jakob; Hatz, Christoph; Endimiani, Andrea (2019). Polyclonal gut colonization with extended-spectrum cephalosporin- and/or colistin-resistant Enterobacteriaceae: a normal status for hotel employees on the island of Zanzibar, Tanzania. The journal of antimicrobial chemotherapy, 74(10), pp. 2880-2890. Oxford University Press 10.1093/jac/dkz296

Grüter, Basil Erwin; Täschler, Dominik; Strange, Fabio; Rey, Jeannine; von Gunten, Michael; Grandgirard, Denis; Leib, Stephen; Remonda, Luca; Widmer, Hans Rudolf; Nevzati, Edin; Fandino, Javier; Marbacher, Serge; Coluccia, Daniel (2019). Testing bioresorbable stent feasibility in a rat aneurysm model. Journal of neurointerventional surgery, 11(10), pp. 1050-1054. BMJ Publishing Group 10.1136/neurintsurg-2018-014697

Rammlmair, Anna; Mühlethaler, Konrad; Haneke, Eckart (2019). Fusarium onychomycoses in Switzerland-A mycological and histopathological study. Mycoses, 62(10), pp. 928-931. Wiley-Blackwell 10.1111/myc.12964

Pinard, Christopher; Cuq, Benoît; Gibson, Thomas; Brisson, Brigitte; Plattner, Brandon; Lillie, Brandon; Bienzle, Dorothee; Brouwer, Emily; Gottstein, Bruno; Peregrine, Andrew (2019). Alveolar echinococcosis in an Ontario dog resembling an hepatic abscess. Canadian veterinary journal - Revue vétérinaire canadienne, 60(10), pp. 1099-1103. Canadian Veterinary Medical Association

Pires, Humberto; Martins, Manuel; Matos, Ana Cristina; Cardoso, Luís; Monteiro, Fernando; Roque, Natália; Nunes, Telmo; Gottstein, Bruno; Cortes, Helder (2019). Geospatial analysis applied to seroepidemiological survey of canine leishmaniosis in east-central Portugal. Veterinary parasitology, 274, p. 108930. Elsevier 10.1016/j.vetpar.2019.108930

Nasher, Fauzy; Kwun, Min Jung; Croucher, Nicholas J; Heller, Manfred; Hathaway, Lucy J. (2019). Peptide occurring in Enterobacteriaceae triggers Streptococcus pneumoniae cell death. Frontiers in cellular and infection microbiology, 9(320), p. 320. Frontiers 10.3389/fcimb.2019.00320

Staehelin, Cornelia; Chernet, Afona; Sydow, Véronique; Piso, Rein J; Suter, Franziska Marta; Funez, Sabine; Nickel, Beatrice; Paris, Daniel H; Labhardt, Niklaus D (2019). Seroprotection rates of vaccine-preventable diseases among newly arrived Eritrean asylum seekers in Switzerland: a cross-sectional study. Journal of travel medicine, 26(6) Oxford University Press 10.1093/jtm/taz035

Nigg, Aurélien; Brilhante, Michael; Dazio, Valentina; Clément, Mathieu; Collaud, Alexandra; Gobeli, Stefanie; Willi, Barbara; Endimiani, Andrea; Schuller, Simone; Perreten, Vincent (2019). Shedding of OXA-181 carbapenemase-producing Escherichia coli from companion animals after hospitalisation in Switzerland: an outbreak in 2018. Eurosurveillance, 24(39), pp. 13-24. European Centre for Disease Prevention and Control 10.2807/1560-7917.ES.2019.24.39.1900071

Lachenmayer, A.; Gebbers, D.; Gottstein, B.; Candinas, D.; Beldi, G. (2019). Elevated incidence of alveolar echinococcosis in immunocompromised patients. Food and waterborne parasitology, 16, e00060. Elsevier 10.1016/j.fawpar.2019.e00060

Fulchini, R; Albrich, W C; Kronenberg, A.; Egli, A; Kahlert, C R; Schlegel, M; Kohler, P (2019). Antibiotic-resistant pathogens in different patient settings and identification of surveillance gaps in Switzerland - a systematic review. Epidemiology and infection, 147(e259), e259. Cambridge University Press 10.1017/S0950268819001523

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Thomi, Gierin; Joerger-Messerli, Marianne; Haesler, Valérie; Muri, Lukas; Surbek, Daniel; Schoeberlein, Andreina (2019). Intranasally Administered Exosomes from Umbilical Cord Stem Cells Have Preventive Neuroprotective Effects and Contribute to Functional Recovery after Perinatal Brain Injury. Cells, 8(8) MDPI 10.3390/cells8080855

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Muri, Lukas Kilian; Leppert, David; Grandgirard, Denis; Leib, Stephen (2019). MMPs and ADAMs in neurological infectious diseases and multiple sclerosis. Cellular and molecular life sciences : CMLS, 76(16), pp. 3097-3116. Springer 10.1007/s00018-019-03174-6

Mellhammar, Lisa; Linder, Adam; Tverring, Jonas; Christensson, Bertil; Boyd, John H; Sendi, Parham; Åkesson, Per; Kahn, Fredrik (2019). NEWS2 is Superior to qSOFA in Detecting Sepsis with Organ Dysfunction in the Emergency Department. Journal of Clinical Medicine, 8(8) MDPI 10.3390/jcm8081128

Muri, Lukas Kilian; Le, Ngoc Dung; Zemp, Jonas; Grandgirard, Denis; Leib, Stephen L. (2019). Metformin mediates neuroprotection and attenuates hearing loss in experimental pneumococcal meningitis. Journal of neuroinflammation, 16(1), p. 156. BioMed Central 10.1186/s12974-019-1549-6

Zanichelli, Veronica; Huttner, Angela; Harbarth, Stephan; Kronenberg, Andreas; Huttner, Benedikt; Swiss Centre For Antibiotic Resistance Anresis, ANRESIS (2019). Antimicrobial resistance trends in Escherichia coli, Klebsiella pneumoniae and Proteus mirabilis urinary isolates from Switzerland: retrospective analysis of data from a national surveillance network over an 8-year period (2009-2016). Swiss medical weekly, 149, w20110. EMH Media 10.4414/smw.2019.20110

Boelsen, Laura K; Dunne, Eileen M; Mika, Moana; Eggers, Stefanie; Nguyen, Cattram D; Ratu, F Tupou; Russell, Fiona M; Mulholland, E Kim; Hilty, Markus; Satzke, Catherine (2019). The association between pneumococcal vaccination, ethnicity, and the nasopharyngeal microbiota of children in Fiji. Microbiome, 7(1), p. 106. BioMed Central 10.1186/s40168-019-0716-4

Muri, Lukas; Perny, Michael; Zemp, Jonas; Grandgirard, Denis; Leib, Stephen L. (2019). Combining Ceftriaxone with Doxycycline and Daptomycin Reduces Mortality, Neuroinflammation, Brain Damage and Hearing Loss in Infant Rat Pneumococcal Meningitis. Antimicrobial agents and chemotherapy, 63(7) American Society for Microbiology 10.1128/AAC.00220-19

Seth-Smith, Helena; Egli-Gany, Dianne; Golparian, Daniel; Donà, Valentina; Endimiani, Andrea; Unemo, Magnus; Low, Nicola (July 2019). P637 Neisseria gonorrhoeae genomic diversity in high risk groups in Switzerland [abstract]. Sexually transmitted infections, 95(Suppl 1), P637. BMJ Publishing Group 10.1136/sextrans-2019-sti.705

Donà, Valentina; Scheidegger, Maximilian; do Couto Pires, João Pedro; Furrer, Hansjakob; Atkinson, Andrew; Babouee Flury, Baharak (2019). Gradual in vitro Evolution of Cefepime Resistance in an ST131 Escherichia coli Strain Expressing a Plasmid-Encoded CMY-2 β-Lactamase. Frontiers in Microbiology, 10, p. 1311. Frontiers 10.3389/fmicb.2019.01311

Gariani, Karim; Lebowitz, Dan; Kressmann, Benjamin; von Dach, Elodie; Sendi, Parham; Waibel, Felix; Berli, Martin; Huber, Tanja; Lipsky, Benjamin A; Uçkay, Ilker (2019). Oral Amoxicillin/Clavulanate for Treating Diabetic Foot Infections. Diabetes, obesity & metabolism, 21(6), pp. 1483-1486. Wiley 10.1111/dom.13651

Jent, Philipp; Thalmann, Laura; Pabst, Thomas; Droz, Sara; Sendi, Parham (2019). Adjunctive gentamicin did not improve outcome of enterococcal bacteraemia in neutropenic patients: a propensity scored matched study. Infectious diseases, 51(6), pp. 409-416. Taylor & Francis 10.1080/23744235.2019.1581946

Pfortmüller, Carmen; Barbani, Maria Teresa; Schefold, Jörg Christian; Hage, Elias; Heim, Albert; Zimmerli, Stefan (2019). Severe acute respiratory distress syndrome (ARDS) induced by human adenovirus B21: Report on 2 cases and literature review. Journal of critical care, 51, pp. 99-104. Elsevier 10.1016/j.jcrc.2019.02.019

Hupp, Sabrina; Grandgirard, Denis; Mitchell, Timothy J.; Leib, Stephen; Hathaway, Lucy Jane; Iliev, Asparouh I. (2019). Pneumolysin and the bacterial capsule of Streptococcus pneumoniae cooperatively inhibit taxis and motility of microglia. Journal of neuroinflammation, 16(1), p. 105. BioMed Central 10.1186/s12974-019-1491-7

Krämer, Julia Gabriele; Aebi, Susanne; Oppliger, Anne; Hilty, Markus (2019). Indoor air microbiota of pig farms drives the composition of the pig farmer's nasal microbiota in a season dependent and farm specific manner. Applied and environmental microbiology, 85(9) American Society for Microbiology 10.1128/AEM.03038-18

Büdel, Thomas; Clément, Mathieu; Bernasconi, Odette J.; Principe, Luigi; Perreten, Vincent; Luzzaro, Francesco; Endimiani, Andrea (2019). Evaluation of EDTA- and DPA-Based Microdilution Phenotypic Tests for the Detection of MCR-Mediated Colistin Resistance in Enterobacteriaceae. Microbial drug resistance, 25(4), pp. 494-500. Mary Ann Liebert 10.1089/mdr.2018.0275

Ackermann-Gäumann, Rahel; Eyer, Claudia; Leib, Stephen; Niederhauser-Lüthi, Christoph (2019). Comparison of Four Commercial IgG-Enzyme-Linked Immunosorbent Assays for the Detection of Tick-Borne Encephalitis Virus Antibodies. Vector borne and zoonotic diseases, 19(5), pp. 358-364. Mary Ann Liebert 10.1089/vbz.2018.2359

Büdel, Thomas; Kuenzli, Esther; Clément, Mathieu; Bernasconi, Odette Joëlle; Fehr, Jan; Mohammed, Ali Haji; Hassan, Nadir Khatib; Zinsstag, Jakob; Hatz, Christoph; Endimiani, Andrea (14 April 2019). High prevalence of gut colonization with extended-spectrum cephalosporin- and colistin-resistant Enterobacteriaceae in healthy people in Zanzibar, Tanzania (Unpublished). In: 29th European Congress of Clinical Microbiology and Infectious Diseases (ECCMID). Amsterdam. 13-16 April, 2019.

Korten, Insa; Ramsey, Kathryn; Mika, Moana; Usemann, Jakob; Frey, Urs; Hilty, Markus; Latzin, Philipp (2019). Nasal Microbiota and Respiratory Tract Infections: The Role of Viral Detection. American journal of respiratory and critical care medicine, 199(7), pp. 919-922. American Lung Association 10.1164/rccm.201710-2020LE

Uçkay, Ilker; Berli, Martin; Sendi, Parham; Lipsky, Benjamin A (2019). Principles and practice of antibiotic stewardship in the management of diabetic foot infections. Current opinion in infectious diseases, 32(2), pp. 95-101. Wolters Kluwer Health 10.1097/QCO.0000000000000530

Sendi, Parham; Wustmann, Kerstin; Büchi, Annina E.; Noti, Fabian; Klaeser, Bernd; Sonderegger, Beat; Auf der Maur, Christoph; Mercier, Thomas; Schwerzmann, Markus; Ruppen, Corinne (2019). Cardiac Implantable Electronic Device–Related Infection Due to Granulicatella adiacens. Open Forum Infectious Diseases, 6(4), ofz130. Oxford University Press 10.1093/ofid/ofz130

Quinta Brilhante, Michael; Donà, Valentina; Overesch, Gudrun; Endimiani, Andrea; Perreten, Vincent (2019). Characterisation of a porcine Escherichia coli strain from Switzerland carrying mcr-1 on a conjugative multidrug resistance IncHI2 plasmid. Journal of global antimicrobial resistance, 16, pp. 123-124. Elsevier 10.1016/j.jgar.2018.12.007

Pedersen, Eva S L; Spycher, Ben D; de Jong, Carmen; Halbeisen, Florian; Ramette, Alban; Gaillard, Erol A; Granell, Raquel; Henderson, A John; Kuehni, Claudia E (2019). The simple 10-item PARC tool to predict childhood asthma - an external validation. The Journal of allergy and clinical immunology, 7(3), 943-953.e4. Elsevier 10.1016/j.jaip.2018.09.032

van der Kolk, J.H.; Endimiani, A.; Graubner, Claudia; Gerber, Vinzenz; Perreten, Vincent (2019). Acinetobacter in Veterinary Medicine with emphasis on A. baumannii. Journal of global antimicrobial resistance, 16, pp. 59-71. Elsevier 10.1016/j.jgar.2018.08.011

Sendi, Parham (2019). Infective endocarditis caused by Streptococcus agalactiae: time for beta-hemolytic streptococci to follow treatment recommendations for S. aureus? European journal of clinical microbiology & infectious diseases, 38(3), pp. 419-422. Springer 10.1007/s10096-018-03446-2

Kahn, Fredrik; Tverring, Jonas; Mellhammar, Lisa; Wetterberg, Nils; Bläckberg, Anna; Studahl, Erika; Hadorn, Niklas; Kahn, Robin; Nueesch, Susanne; Jent, Philipp; Ricklin, Meret E; Boyd, John; Christensson, Bertil; Sendi, Parham; Åkesson, Per; Linder, Adam (2019). Heparin-Binding Protein As A Prognostic Biomarker of Sepsis and Disease Severity at The Emergency Department. Shock, 52(6), e135-e145. Lippincott Williams & Wilkins 10.1097/SHK.0000000000001332

Colicchio, Roberta; Pagliuca, Chiara; Ricci, Susanna; Scaglione, Elena; Grandgirard, Denis; Masouris, Ilias; Farina, Fabrizio; Pagliarulo, Caterina; Mantova, Giuseppe; Paragliola, Laura; Leib, Stephen; Koedel, Uwe; Pozzi, Gianni; Alifano, Pietro; Salvatore, Paola (2019). Virulence traits of serogroup C meningococcus and isogenic mutant, defective in surface-exposed sialic acid, in a murine model of meningitis. Infection and immunity, 87(4) American Society for Microbiology 10.1128/IAI.00688-18

Barkati, Sapha; Gottstein, Bruno; Müller, Norbert; Sheitoyan-Pesant, Caroline; Metrakos, Peter; Chen, Tianyan; Garceau, Richard; Libman, Michael D; Ndao, Momar; Yansouni, Cedric P (2019). First Human Case of Metacestode Infection Caused by Versteria sp. in a Kidney Transplant Recipient. Clinical infectious diseases, 68(4), pp. 680-683. Oxford University Press 10.1093/cid/ciy602

Zimmerli, Werner; Sendi, Parham (2019). Role of Rifampin against Staphylococcal Biofilm Infections , in Animal Models, and in Orthopedic-Device-Related Infections. Antimicrobial agents and chemotherapy, 63(2) American Society for Microbiology 10.1128/AAC.01746-18

Boyle, K Keely; Kuo, Feng-Chih; Horcajada, Juan Pablo; Hughes, Harriet; Cavagnaro, Luca; Marculescu, Camelia; McLaren, Alex; Nodzo, Scott R; Riccio, Giovanni; Sendi, Parham; Silibovsky, Randi; Stammers, John; Tan, Timothy L; Wimmer, Matthias (2019). General Assembly, Treatment, Antimicrobials: Proceedings of International Consensus on Orthopedic Infections. The journal of arthroplasty, 34(2S), S225-S237. Elsevier 10.1016/j.arth.2018.09.074

Li, Ho-Kwong; Rombach, Ines; Zambellas, Rhea; Walker, A Sarah; McNally, Martin A; Atkins, Bridget L; Lipsky, Benjamin A; Hughes, Harriet C; Bose, Deepa; Kümin, Michelle; Scarborough, Claire; Matthews, Philippa C; Brent, Andrew J; Lomas, Jose; Gundle, Roger; Rogers, Mark; Taylor, Adrian; Angus, Brian; Byren, Ivor; Berendt, Anthony R; ... (2019). Oral versus Intravenous Antibiotics for Bone and Joint Infection. The New England journal of medicine, 380(5), pp. 425-436. Massachusetts Medical Society 10.1056/NEJMoa1710926

Ott, Sebastian Robert; Meier, N; Kolditz, Martin; Bauer, Torsten T; Rohde, Gernot; Presterl, Elisabeth; Schürmann, Dirk; Lepper, Philipp M; Ringshausen, Felix C; Flick, Holger; Leib, Stephen; Pletz, Mathias W (2019). "Pulmonary Nocardiosis in Western Europe-Clinical evaluation of 43 patients and population-based estimates of hospitalization rates". International journal of infectious diseases, 81, pp. 140-148. Elsevier 10.1016/j.ijid.2018.12.010

Needle, David B; Selig, Martin K; Jackson, Kenneth A; Delwart, Eric; Tighe, Ellyn; Leib, Stephen L.; Seuberlich, Torsten; Pesavento, Patricia A (2019). Fatal bronchopneumonia caused by skunk adenovirus 1 in an African pygmy hedgehog. Journal of veterinary diagnostic investigation, 31(1), pp. 103-106. American Association of Veterinary Laboratory Diagnosticians AAVLD 10.1177/1040638718812123

do Couto Pires, João Pedro; Kraemer, Julia G.; Kuenzli, Esther; Kasraian, Sara; Tinguely, Regula; Hatz, Christoph; Endimiani, Andrea; Hilty, Markus (2019). Gut microbiota dynamics in travelers returning from India colonized with extended-spectrum cephalosporin-resistant Enterobacteriaceae: A longitudinal study. Travel medicine and infectious disease, 27, pp. 72-80. Elsevier 10.1016/j.tmaid.2018.10.012

Marion, Solenne; Studer, Nicolas; Desharnais, Lyne; Menin, Laure; Escrig, Stéphane; Meibom, Anders; Hapfelmeier, Siegfried Hektor; Bernier-Latmani, Rizlan (2019). In vitro and in vivo characterization of Clostridium scindens bile acid transformations. Gut microbes, 10(4), pp. 481-503. Taylor & Francis 10.1080/19490976.2018.1549420

Molari, Massimiliano; Guilini, Katja; Lins, Lidia; Ramette, Alban; Vanreusel, Ann (2019). CO2 leakage can cause loss of benthic biodiversity in submarine sands. Marine environmental research, 144, pp. 213-229. Elsevier 10.1016/j.marenvres.2019.01.006

Gasser, Michael; Zingg, Walter; Cassini, Alessandro; Kronenberg, Andreas (2019). Attributable deaths and disability-adjusted life-years caused by infections with antibiotic-resistant bacteria in Switzerland. Lancet infectious diseases, 19(1), pp. 17-18. Elsevier 10.1016/S1473-3099(18)30708-4

Bernasconi, Odette Joëlle; Principe, Luigi; Viaggi, Valentina; Luzzaro, Francesco; Endimiani, Andrea (2019). A Novel VanA-Carrying Plasmid in a Clinical Isolate of Enterococcus avium. International journal of antimicrobial agents, 53(6), pp. 876-877. Elsevier 10.1016/j.ijantimicag.2019.04.006

Endimiani, Andrea (2019). Carbapenemase-producing Enterobacteriaceae in humans (Unpublished). In: One Health meets Whole genome sequencing. Lucerne. 21.05.2019.

Sommerstein, Rami; Merz, Tobias M.; Berger, Sabine; Krämer, Julia G.; Marschall, Jonas; Hilty, Markus (2019). Patterns in the longitudinal oropharyngeal microbiome evolution related to ventilator-associated pneumonia. Antimicrobial Resistance and Infection Control, 8, p. 81. BioMed Central 10.1186/s13756-019-0530-6

Frey, Pascal Marcel; Marti, Grischa Robert; Droz, Sara Christine; de Roche von Arx, Mirjam; Suter, Franziska Marta; Aujesky, Drahomir; Brugger, Silvio (2019). Bacterial colonization of handheld devices in a tertiary care setting: a hygiene intervention study. Antimicrobial Resistance and Infection Control, 8(97), p. 97. BioMed Central 10.1186/s13756-019-0546-y

Endimiani, Andrea (2019). Extended-Spectrum Cephalosporin- and Colistin-Resistant E. coli in Tanzania: High Prevalence of Gut Colonization in Healthy People and Chicken Meat Contamination (Unpublished). In: Microbe. San Francisco, USA. 19-24 June, 2019.

Erni, Silvia T.; Fernandes, Gabriella; Buri, Michelle; Perny, Michael; Rutten, Rolf Jan; van Noort, Johannes M; Senn, Pascal; Grandgirard, Denis; Roccio, Marta; Leib, Stephen (2019). Anti-inflammatory and Oto-Protective Effect of the Small Heat Shock Protein Alpha B-Crystallin (HspB5) in Experimental Pneumococcal Meningitis. Frontiers in neurology, 10(570), p. 570. Frontiers Media S.A. 10.3389/fneur.2019.00570

Brugger, Silvio D.; Kraemer, Julia G.; Qi, Weihong; Bomar, Lindsey; Oppliger, Anne; Hilty, Markus (2019). Age-Dependent Dissimilarity of the Nasopharyngeal and Middle Ear Microbiota in Children With Acute Otitis Media. Frontiers in genetics, 10(555), p. 555. Frontiers Media SA 10.3389/fgene.2019.00555

Gisler, Valentin; Benneker, Lorin; Sendi, Parham (2019). Late Spinal Implant Infection caused by Cutibacterium acnes. Journal of bone and joint infection, 4(4), pp. 163-166. Ivyspring International Publisher 10.7150/jbji.36802

Dräger, Sarah; Marx, Anna-Friederike; Pigny, Fiona; Cherpillod, Pascal; Eisermann, Philip; Sendi, Parham; Widmer, Andreas F (2019). Lymphocytic choriomeningitis virus meningitis after needlestick injury: a case report. Antimicrobial resistance and infection control, 8(77), p. 77. BioMed Central 10.1186/s13756-019-0524-4

Ottink, Karsten D; Strahm, Carol; Muller-Kobold, Anneke; Sendi, Parham; Wouthuyzen-Bakker, Marjan (2019). Factors to Consider When Assessing the Diagnostic Accuracy of Synovial Leukocyte Count in Periprosthetic Joint Infection. Journal of bone and joint infection, 4(4), pp. 167-173. Ivyspring International Publisher 10.7150/jbji.34854

Hotchen, Andrew J.; Dudareva, Maria; Ferguson, Jamie Y.; Sendi, Parham; McNally, Martin A. (2019). The BACH classification of long bone osteomyelitis. Bone & joint research, 8(10), pp. 459-468. British Editorial Society of Bone & Joint Surgery 10.1302/2046-3758.810.BJR-2019-0050.R1

Sturzenegger, Mathias; Sendi, Parham (2019). «Los e’mal …» – ein (nicht so) klarer Fall von Rückenschmerzen. Swiss medical forum, 19(1920), pp. 326-331. EMH Schweizerischer Ärzteverlag AG 10.4414/smf.2019.08093

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Nasher, Fauzy Negiub Ali; Aguilar, Fernando; Aebi, Susanne; Hermans, Peter WM; Heller, Manfred; Hathaway, Lucy Jane (2018). Peptide Ligands of AmiA, AliA, and AliB Proteins Determine Pneumococcal Phenotype. Frontiers in Microbiology, 9(3013) Frontiers 10.3389/fmicb.2018.03013

Golparian, Daniel; Donà, Valentina; Sánchez-Busó, Leonor; Foerster, Sunniva; Harris, Simon; Endimiani, Andrea; Low, Nicola; Unemo, Magnus (2018). Antimicrobial resistance prediction and phylogenetic analysis of Neisseria gonorrhoeae isolates using the Oxford Nanopore MinION sequencer. Scientific Reports, 8(1), p. 17596. Nature Publishing Group 10.1038/s41598-018-35750-4

Sendi, Parham; Müller, Andreas M; Berbari, Elie (2018). Are All Joints Equal? Synovial Fluid Analysis in Periprosthetic Joint Infection. Journal of bone and joint infection, 3(5), pp. 258-259. Ivyspring International Publisher 10.7150/jbji.30491

Egli, Adrian; Blanc, Dominique S; Greub, Gilbert; Keller, Peter Michael; Lazarevic, Vladimir; Lebrand, Aitana; Leib, Stephen; Neher, Richard A; Perreten, Vincent; Ramette, Alban; Schrenzel, Jacques; Stephan, Roger; Wagner, Karolin; Wuethrich, Daniel; Xenarios, Ioannis (2018). Improving the quality and workflow of bacterial genome sequencing and analysis: paving the way for a Switzerland-wide molecular epidemiological surveillance platform. Swiss medical weekly, 148(w14693), w14693. EMH Media 10.4414/smw.2018.14693

Principe, Luigi; Viaggi, Valentina; Clément, Mathieu; Meroni, Elisa; Pini, Beatrice; Endimiani, Andrea; Luzzaro, Francesco (2018). Emergence of CTX-M-1-producing Salmonella enterica serovar Napoli: a novel "enzyme-pathogen association" in the Italian ESBL endemic context. Journal of global antimicrobial resistance, 15, pp. 101-102. Elsevier 10.1016/j.jgar.2018.08.023

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Vernazza, P; Tschudin, S; Kronenberg, Andreas Oskar; Hauser, Christoph Victor; Huttner, B; Manuel, O; Kuster, S; Scheidegger, C; Berger, C; Müller, N (2018). Entwicklung infektiologischer Guidelines – ein kontinuierlicher Prozess. Swiss Medical Forum, 18(46), pp. 963-965. EMH Swiss Medical Publishers 10.4414/smf.2018.03382

Künzli, Andrea Brigitte; Marschall, Jonas; Schefold, Joerg C.; Schafer, Margaret; Engler, Oliver B; Ackermann-Gäumann, Rahel; Reineke, David C; Suter, Franziska Marta; Staehelin, Cornelia (2018). Hantavirus Cardiopulmonary Syndrome Due to Imported Andes Hantavirus Infection in Switzerland: A Multidisciplinary Challenge, Two Cases and a Literature Review. Clinical infectious diseases, 67(11), pp. 1788-1795. Oxford Univ. Press 10.1093/cid/ciy443

Büchi, Annina; Hoffmann, Mario; Zbinden, Stephan; Atkinson, Andrew; Sendi, Parham (2018). The Duke minor criterion "predisposing heart condition" in native valve infective endocarditis - a systematic review. Swiss medical weekly, 148(w14675), w14675. EMH Schweizerischer Ärzteverlag 10.4414/smw.2018.14675

Kummer, Mirjam; Šestáková, Nela; Theurillat, Regula; Huynh-Do, Uyen; Endimiani, Andrea; Sendi, Parham; Thormann, Wolfgang (2018). Monitoring of cefepime in urine by micellar electrokinetic capillary chromatography with ultraviolet detection and liquid chromatography coupled to mass spectrometry. Journal of separation science, 41(21), pp. 4067-4074. Wiley-VCH 10.1002/jssc.201800763

Kritikos, A; Neofytos, D; Khanna, N; Schreiber, P W; Boggian, K; Bille, J; Schrenzel, J; Mühlethaler, Konrad; Zbinden, R; Bruderer, T; Goldenberger, D; Pfyffer, G; Conen, A; Van Delden, C; Zimmerli, Stefan; Sanglard, D; Bachmann, D; Marchetti, O; Lamoth, F (2018). Accuracy of Sensititre YeastOne echinocandins epidemiological cut-off values for identification of FKS mutant Candida albicans and Candida glabrata: a ten year national survey of the Fungal Infection Network of Switzerland (FUNGINOS). Clinical microbiology and infection, 24(11), 1214.e1-1214.e4. Elsevier 10.1016/j.cmi.2018.05.012

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Egli, Adrian; Greub, Gilbert; Suter, Franziska Marta; Schrenzel, Jacques (2018). Moderne Verfahren zur Bestimmung von Antibiotikaresistenzen. Swiss Medical Forum, 18(46), pp. 950-956. EMH Swiss Medical Publishers 10.4414/smf.2018.03403

Buetti, Niccolò Ivo Marco-Aurelio; Lo Priore, Elia Francesco; Sommerstein, Rami; Atkinson, Andrew; Kronenberg, Andreas Oskar; Marschall, Jonas (2018). Epidemiology of subsequent bloodstream infections in the ICU. Critical care, 22(1), p. 259. BioMed Central 10.1186/s13054-018-2148-0

Roccio, Marta; Perny, Michael; Ealy, Megan; Widmer, Hans Ruedi; Heller, Stefan; Senn, Pascal (2018). Molecular characterization and prospective isolation of human fetal cochlear hair cell progenitors. Nature communications, 9(4027), pp. 1-14. Nature Publishing Group 10.1038/s41467-018-06334-7

Meier, Rahel; Wirth, Thomas; Vögelin, Esther; Sendi, Parham (2018). Characteristics and Outcome of Twenty-Nine Implant-Related Infections of the Hand and Fingers: Results from a Twelve-Year Observational Study. Surgical infections, 19(7), pp. 729-734. Mary Ann Liebert 10.1089/sur.2018.133

Neumann, Roland P; Hilty, Markus; Xu, Binbin; Usemann, Jakob; Korten, Insa; Mika, Moana; Müller, Loretta; Latzin, Philipp; Frey, Urs (2018). Nasal microbiota and symptom persistence in acute respiratory tract infections in infants. ERJ Open Research, 4(4) European Respiratory Society 10.1183/23120541.00066-2018

Wang, Junhua; Cardoso, Rita; Marreros, Nelson; Müller, Norbert; Lundström Stadelmann, Britta; Siffert, Myriam; Vuitton, Dominique A; Boué, Franck; Lin, Renyong; Wen, Hao; Gottstein, Bruno (2018). Foxp3 T Regulatory Cells as a Potential Target for Immunotherapy against Primary Infection with Echinococcus multilocularis Eggs. Infection and immunity, 86(10) American Society for Microbiology 10.1128/IAI.00542-18

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Donà, Valentina; Smid, Joost H; Kasraian, Sara; Egli-Gany, Dianne; Dost, Ferah; Imeri, Fatime; Unemo, Magnus; Low, Nicola; Endimiani, Andrea (2018). Mismatch Amplification Mutation Assay (MAMA)-Based Real-Time PCR for Rapid Detection of and Antimicrobial Resistance Determinants in Clinical Specimens. Journal of clinical microbiology, 56(9), e00365-18. American Society for Microbiology 10.1128/JCM.00365-18

Muri, Lukas; Grandgirard, Denis; Buri, Michelle; Perny, Michael; Leib, Stephen (2018). Combined effect of non-bacteriolytic antibiotic and inhibition of matrix metalloproteinases prevents brain injury and preserves learning, memory and hearing function in experimental paediatric pneumococcal meningitis. Journal of neuroinflammation, 15(1), p. 233. BioMed Central 10.1186/s12974-018-1272-8

Cusini, Alexia; Herren, David; Bütikofer, Lukas; Plüss-Suard, Catherine; Kronenberg, Andreas Oskar; Marschall, Jonas (2018). Intra-hospital differences in antibiotic use correlate with antimicrobial resistance rate in Escherichia coli and Klebsiella pneumoniae: a retrospective observational study. Antimicrobial Resistance and Infection Control, 7(1), p. 89. BioMed Central 10.1186/s13756-018-0387-0

Brochado, Ana Rita; Telzerow, Anja; Bobonis, Jacob; Banzhaf, Manuel; Mateus, André; Selkrig, Joel; Huth, Emily; Bassler, Stefan; Zamarreño Beas, Jordi; Zietek, Matylda; Ng, Natalie; Förster, Sunniva; Ezraty, Benjamin; Py, Béatrice; Barras, Frédéric; Savitski, Mikhail M; Bork, Peer; Göttig, Stephan; Typas, Athanasios (2018). Species-specific activity of antibacterial drug combinations. Nature, 559(7713), pp. 259-263. Macmillan Journals Ltd. 10.1038/s41586-018-0278-9

Mika, Moana; Nita, Izabela Magdalena; Morf, Laura Ursina; Qi, Weihong; Beyeler, Seraina Martina; Bernasconi, Eric; Marsland, Benjamin J; Ott, Sebastian Robert; von Garnier, Christophe; Hilty, Markus (2018). Microbial and host immune factors as drivers of COPD. ERJ Open Research, 4(3) European Respiratory Society 10.1183/23120541.00015-2018

Martin, Thomas C S; Rauch, Andri; Salazar Vizcaya, Luisa Paola; Martin, Natasha K (2018). Understanding and Addressing Hepatitis C Virus Reinfection Among Men Who Have Sex with Men. Infectious disease clinics of North America, 32(2), pp. 395-405. Elsevier 10.1016/j.idc.2018.02.004

Buetti, Niccolò Ivo Marco-Aurelio; Lo Priore, Elia Francesco; Atkinson, Andrew; Kronenberg, Andreas Oskar; Marschall, Jonas (2018). Low incidence of subsequent bacteremia or fungemia after removal of a colonized intravascular catheter tip. Clinical microbiology and infection, 24(5), 548.e1-548.e3. Elsevier 10.1016/j.cmi.2017.09.009

Orasch, Christina; Mertz, Dominik; Garbino, Jorge; van Delden, Christian; Emonet, Stephane; Schrenzel, Jacques; Zimmerli, Stefan; Damonti, Lauro; Mühlethaler, Konrad; Imhof, Alexander; Ruef, Christian; Fehr, Jan; Zbinden, Reinhard; Boggian, Katia; Bruderer, Thomas; Flückiger, Ursula; Conen, Anna; Khanna, Nina; Frei, Reno; Bregenzer, Thomas; ... (2018). Fluconazole non-susceptible breakthrough candidemia after prolonged low-dose prophylaxis: a prospective FUNGINOS study. Journal of infection, 76(5), pp. 489-495. Elsevier 10.1016/j.jinf.2017.12.018

Ramette, Alban Nicolas; Kronenberg, Andreas Oskar (2018). Prevalence of carbapenem-resistant Acinetobacter baumannii from 2005 to 2016 in Switzerland. BMC infectious diseases, 18(159), pp. 1-6. BioMed Central 10.1186/s12879-018-3061-5

Nasher, Fauzy; Förster, Sunniva; Yildirim, Efe C; Grandgirard, Denis; Leib, Stephen; Heller, Manfred; Hathaway, Lucy (2018). Foreign peptide triggers boost in pneumococcal metabolism and growth. BMC microbiology, 18(1), p. 23. BioMed Central 10.1186/s12866-018-1167-y

Kraemer, Julia G; Ramette, Alban; Aebi, Suzanne; Oppliger, Anne; Hilty, Markus (2018). Influence of pig farming on the human's nasal microbiota: The key role of the airborne microbial communities. Applied and environmental microbiology, 84(6) American Society for Microbiology 10.1128/AEM.02470-17

Bernasconi, Odette Joëlle; Donà, Valentina; Do Couto Pires, Joao Pedro; Kuenzli, Esther; Christoph, Hatz; Luzzaro, Francesco; Perreten, Vincent; Endimiani, Andrea (2018). Deciphering the Complete Deletion of the MgrB Locus in an Unusual Colistin-Resistant Klebsiella pneumoniae Colonizing the Gut of a Traveler Returning from India. International journal of antimicrobial agents, 51(3), pp. 529-531. Elsevier 10.1016/j.ijantimicag.2017.09.014

do Couto Pires, João Pedro; Kuenzli, Esther; Hauser, Christoph; Tinguely, Regula; Kasraian Fard, Sara; Atkinson, Andrew; Rauch, Andri; Furrer, Hansjakob; Perreten, Vincent; Marschall, Jonas; Hatz, Christoph; Endimiani, Andrea (2018). Intestinal Colonization with Extended-Spectrum Cephalosporin-Resistant Enterobacteriaceae in Different Populations in Switzerland: Prevalence, Risk Factors and Molecular Features. Journal of global antimicrobial resistance, 12, pp. 17-19. Elsevier 10.1016/j.jgar.2017.11.007

Chanchaithong, Pattrarat; Prapasarakul, Nuvee; Sirisopit Mehl, Nicole; Suanpairintr, Nipattra; Teankum, Komkrich; Collaud, Alexandra; Endimiani, Andrea; Perreten, Vincent (2018). Extensively drug-resistant community-acquired Acinetobacter baumannii sequence type 2 in a dog with urinary tract infection in Thailand. Journal of global antimicrobial resistance, 13, pp. 33-34. Elsevier 10.1016/j.jgar.2018.02.007

Glas, Michael; Frick, Tamara; Springe, Dirk; Putzu, Alessandro; Zürcher, Patrick; Grandgirard, Denis; Leib, Stephen; Jakob, Stephan; Takala, Jukka; Hänggi, Matthias (2018). Neuroprotection with the P53-Inhibitor Pifithrin-μ After Cardiac Arrest in a Rodent Model. Shock, 49(2), pp. 229-234. Lippincott Williams & Wilkins 10.1097/SHK.0000000000000917

Bewersdorf, Jan P; Grandgirard, Denis; Koedel, Uwe; Leib, Stephen (2018). Novel and preclinical treatment strategies in pneumococcal meningitis. Current opinion in infectious diseases, 31(1), pp. 85-92. Lippincott Williams & Wilkins 10.1097/QCO.0000000000000416

Nasher, Fauzy Negiub Ali; Heller, Manfred; Hathaway, Lucy Jane (2018). Streptococcus pneumoniae proteins AmiA, AliA, and AliB bind peptides found in ribosomal proteins of other bacterial species. Frontiers in Microbiology, 8(2688) Frontiers 10.3389/fmicb.2017.02688

Sommerstein, Rami; Atkinson, Andrew; Lo Priore, Elia; Kronenberg, Andreas Oskar; Marschall, Jonas (2018). Characterizing Non-linear Effects of Hospitalization Duration on Antimicrobial Resistance in Respiratory Isolates: A Retrospective Analysis of a Prospective Nationwide Surveillance System. Clinical microbiology and infection, 24(1), pp. 45-52. Elsevier 10.1016/j.cmi.2017.05.018

Korten, Insa; Kieninger, Elisabeth; Klenja, Shkipe; Mack, Ines; Schläpfer, Njima; Barbani, Maria Teresa; Regamey, Nicolas; Kuehni, Claudia E; Hilty, Markus; Frey, Urs; Gorgievski, Meri; Casaulta Aebischer, Carmen; Latzin, Philipp (2018). Respiratory viruses in healthy infants and infants with cystic fibrosis: a prospective cohort study. Thorax, 73(1), pp. 13-20. BMJ Publishing Group 10.1136/thoraxjnl-2016-209553

Jönsson, Agnez; Foerster, Sunniva; Golparian, Daniel; Hamasuna, Ryoichi; Jacobsson, Susanne; Lindberg, Magnus; Jensen, Jörgen Skov; Ohnishi, Makoto; Unemo, Magnus (2018). In vitro activity and time-kill curve analysis of sitafloxacin against a global panel of antimicrobial-resistant and multidrug-resistant Neisseria gonorrhoeae isolates. Acta pathologica, microbiologica et immunologica Scandinavica : APMIS, 126(1), pp. 29-37. Wiley-Blackwell 10.1111/apm.12777

Chisenga, Caroline C; Musukuma, Kalo; Chilengi, Roma; Zürcher, Samuel; Munamunungu, Virginia; Siyunda, Alice; Ojok, David; Bauer, Sophie; Wandeler, Gilles; Vinikoor, Michael (2018). Field performance of the Determine HBsAg point-of-care test for diagnosis of hepatitis B virus co-infection among HIV patients in Zambia. Journal of clinical virology, 98, pp. 5-7. Elsevier 10.1016/j.jcv.2017.11.005

Ruppen, Corinne; Notter, Julia; Strahm, Carol; Sonderegger, Beat; Sendi, Parham (2018). Osteoarticular and skin and soft-tissue infections caused by Streptococcus agalactiae in elderly patients are frequently associated with bacteremia. Diagnostic microbiology and infectious disease, 90(1), pp. 55-57. Elsevier 10.1016/j.diagmicrobio.2017.09.008

Bernasconi, Odette Joëlle; Donà, Valentina; Tinguely, Regula; Endimiani, Andrea (2018). In Vitro Activity of 3 Commercial Bacteriophage Cocktails Against Salmonella and Shigella spp. Isolates of Human Origin. Pathogens and Immunity, 3(1), pp. 72-81. Case Western Reserve University, Cleveland, OH 10.20411/pai.v3i1.234

Clément, Mathieu; Büdel, Thomas; Bernasconi, Odette Joëlle; Principe, Luigi; Perreten, Vincent; Luzzaro, Francesco; Endimiani, Andrea (2018). The EDTA-based disk-combination tests are unreliable for the detection of MCR-mediated colistin-resistance in Enterobacteriaceae. Journal of microbiological methods, 153, pp. 31-34. Elsevier 10.1016/j.mimet.2018.08.008

Ruppen, Corinne; Mercier, Thomas; Grandgirard, Denis; Leib, Stephen; El Haj, Cristina; Murillo, Oscar; Decosterd, Laurent; Sendi, Parham (2018). Is Penicillin Plus Gentamicin Synergistic Against Sessile Group B Streptococcal Isolates? An Study With an Experimental Model of Foreign-Body Infection. Frontiers in Microbiology, 9, p. 919. Frontiers 10.3389/fmicb.2018.00919

Clément, Mathieu; Ramette, Alban; Bernasconi, Odette J.; Principe, Luigi; Luzzaro, Francesco; Endimiani, Andrea (2018). Whole-Genome Sequence of the First Extended-Spectrum β-Lactamase-Producing Strain of Salmonella enterica subsp. enterica Serovar Napoli. Microbiology resource announcements, 7(10) American Society for Microbiology 10.1128/MRA.00973-18

Endimiani, Andrea (2018). Epidemiology of Carbapenemases: Where Are We? - Carbapenemase Producers: Epidemiology in Travelers and Community-Associated Infections (Unpublished). In: ASM Microbe. Atlanta. 7-11 June, 2018.

Mellors, Theodore R; Rees, Christiaan A; Franchina, Flavio A; Burklund, Alison; Patel, Chaya; Hathaway, Lucy Jane; Hill, Jane E (2018). The volatile molecular profiles of seven Streptococcus pneumoniae serotypes. Journal of chromatography. B - analytical technologies in the biomedical and life sciences, 1096, pp. 208-213. Elsevier 10.1016/j.jchromb.2018.08.032

Lenz, Nicole; Engler, Olivier; Grandgirard, Denis; Leib, Stephen L.; Ackermann-Gäumann, Rahel (2018). Evaluation of antivirals against tick-borne encephalitis virus in organotypic brain slices of rat cerebellum. PLoS ONE, 13(10), e0205294. Public Library of Science 10.1371/journal.pone.0205294

Buetti, Niccolò; Atkinson, Andrew; Widmer, Andreas F; Kronenberg, Andreas; Marschall, Jonas (2018). Catheter-related infections: does the spectrum of microbial causes change over time? A nationwide surveillance study. BMJ open, 8(e023824), pp. 1-5. BMJ Publishing Group 10.1136/bmjopen-2018-023824

Grüter, B; Nevzati, E; Täschler, D; Strange, F; Rey, J; Grandgirard, D.; Leib, Stephen; von Gunten, M; Widmer, Hans Rudolf; Remonda, L; Fandino, J; Coluccia, D; Marbacher, S (2018). Neointima formation and thrombus organization after coil and stent treatments is mediated by cell migration from the adjacent vital vessel wall in rat sidewall aneurysms. Journal of neurological surgery. Part A, Central European neurosurgery, 79(S1), S1-S27. Thieme 10.1055/s-0038-1660695

Grüter, B; Strange, F; Täschler, D; Rey, J; von Gunten, M; Grandgirard, D.; Leib, Stephen; Remonda, L; Widmer, Hans Rudolf; Nevzati, E; Fandino, J; Marbacher, S; Coluccia, D (2018). A biodegradable magnesium stent for aneurysm healing in a rat sidewall aneurysm model. Journal of neurological surgery. Part A, Central European neurosurgery, 79(S 01), S1-S27. Thieme 10.1055/s-0038-1660694

Oechslin, Corinne Pia; Lenz, Nicole; Liechti, Nicole; Ryter, Sarah; Agyeman, Philipp; Bruggmann, Rémy; Leib, Stephen; Beuret, Christian M (2018). Limited Correlation of Shotgun Metagenomics Following Host Depletion and Routine Diagnostics for Viruses and Bacteria in Low Concentrated Surrogate and Clinical Samples. Frontiers in cellular and infection microbiology, 8(375), p. 375. Frontiers 10.3389/fcimb.2018.00375

Molari, Massimiliano; Guilini, Katja; Lott, Christian; Weber, Miriam; de Beer, Dirk; Meyer, Stefanie; Ramette, Alban; Wegener, Gunter; Wenzhöfer, Frank; Martin, Daniel; Cibic, Tamara; De Vittor, Cinzia; Vanreusel, Ann; Boetius, Antje (2018). CO2 leakage alters biogeochemical and ecological functions of submarine sands. Science Advances, 4(2), eaao2040. American Association for the Advancement of Science 10.1126/sciadv.aao2040

Kohler, Philipp; Fulchini, Rosamaria; Albrich, Werner C.; Egli, Adrian; Balmelli, Carlo; Harbarth, Stephan; Héquet, Delphine; Kahlert, Christian R.; Kuster, Stefan P.; Petignat, Christiane; Schlegel, Matthias; Kronenberg, Andreas (2018). Antibiotic resistance in Swiss nursing homes: analysis of National Surveillance Data over an 11-year period between 2007 and 2017. Antimicrobial Resistance and Infection Control, 7(1), p. 88. BioMed Central 10.1186/s13756-018-0378-1

Wassilew, Nasstasja; Seth-Smith, Helena MB; Rolli, Eveline; Fietze, Yvonne; Casanova, Carlo; Führer, Urs; Egli, Adrian; Marschall, Jonas; Buetti, Niccolò Ivo Marco-Aurelio (2018). Outbreak of vancomycin-resistant Enterococcus faecium clone ST796, Switzerland, December 2017 to April 2018. Eurosurveillance, 23(29) European Centre for Disease Prevention and Control 10.2807/1560-7917.es.2018.23.29.1800351

2017

Perny, Michael; Ting, Ching-Chia; Kleinlogel, Sonja; Senn, Pascal; Roccio, Marta (2017). Generation of Otic Sensory Neurons from Mouse Embryonic Stem Cells in 3D Culture. Frontiers in cellular neuroscience, 11, p. 409. Frontiers Research Foundation 10.3389/fncel.2017.00409

Krämer, Julia; Do Couto Pires, Joao Pedro; Küffer, Marianne; Semaani, Eulalia; Endimiani, Andrea; Hilty, Markus; Oppliger, Anne (2017). Prevalence of extended-spectrum β-lactamase-producing Enterobacteriaceae and Methicillin-Resistant Staphylococcus aureus in pig farms in Switzerland. The Science of the total environment, 603-604, pp. 401-405. Elsevier 10.1016/j.scitotenv.2017.06.110

Sommerstein, Rami; Führer, Urs; Lo Priore, Elia Francesco; Casanova, Carlo; Meinel, Dominik M; Seth-Smith, Helena Mb; Kronenberg, Andreas Oskar; Koch, Daniel; Senn, Laurence; Widmer, Andreas F; Egli, Adrian; Marschall, Jonas (2017). Burkholderia stabilis outbreak associated with contaminated commercially-available washing gloves, Switzerland, May 2015 to August 2016. Eurosurveillance, 22(49) European Centre for Disease Prevention and Control 10.2807/1560-7917.ES.2017.22.49.17-00213

Abraha, Million; Bertisch, Barbara; Hauser, Christoph; Klutschke, Michael; Egli-Gany, Dianne; Smid, Joost; Unemo, Magnus; Endimiani, Andrea; Donà, Valentina; Furrer, Hansjakob; Low, Nicola; Kasraian Fard, Sara (23 November 2017). Factors associated with anitmicrobial resistant gonorrheoea infections in men who have sex with men in Switzerland: case control study. In: Swiss Public Health Conference 2017. Congress Center Basel. 22 - 23 Nov 2017.

Endimiani, Andrea (22 November 2017). Emerging clinical needs not covered with the current automation (Unpublished). In: Symposium for Infectious Diseases: How to stay ahead in the race against resistant pathogens. Bern.

Kronenberg, Andreas Oskar; Bütikofer, Lukas; Odutayo, Ayodele; Mühlemann, Kathrin; Da Costa, Bruno R; Battaglia, Markus; Meli, Damian N; Frey, Peter; Limacher, Andreas; Reichenbach, Stephan; Jüni, Peter (2017). Symptomatic treatment of uncomplicated lower urinary tract infections in the ambulatory setting: randomised, double blind trial. BMJ, 359, j4784. BMJ Publishing Group 10.1136/bmj.j4784

Bernasconi, Odette Joëlle; Principe, Luigi; Tinguely, Regula; Karczmarek, Aneta; Perreten, Vincent; Luzzaro, Francesco; Endimiani, Andrea (2017). Evaluation of a New Commercial Microarray Platform for the Simultaneous Detection of β-Lactamase and Mcr-1/-2 Genes in Enterobacteriaceae. Journal of clinical microbiology, 55(10), pp. 3138-3141. American Society for Microbiology 10.1128/JCM.01056-17

Gauthiez, Emeline; Habfast-Robertson, Ines; Rüeger, Sina; Kutalik, Zoltan; Aubert, Vincent; Berg, Thomas; Cerny, Andreas; Gorgievski, Meri; George, Jacob; Heim, Markus H; Malinverni, Raffaele; Moradpour, Darius; Müllhaupt, Beat; Negro, Francesco; Semela, David; Semmo, Nasser; Villard, Jean; Bibert, Stéphanie; Bochud, Pierre-Yves (2017). A systematic review and meta-analysis of HCV clearance. Liver international, 37(10), pp. 1431-1445. Wiley 10.1111/liv.13401

Endimiani, Andrea (20 September 2017). Resistance to polymyxins: genetic bases, epidemiology, and detection issues. In: XXII Congreso Latinoamericano de Bioquímica Clínica. Punta del Este, Uruguay. 20.09.2017.

Endimiani, Andrea (20 September 2017). Resistance to carbapenems: mechanisms and detection methods (Unpublished). In: XXII Congreso Latinoamericano de Bioquímica Clínica. Punta del Este, Uruguay. 20.09.2017.

Babouee Flury, Baharak; Donà, Valentina; Buetti, Niccolò Ivo Marco-Aurelio; Furrer, Hansjakob; Endimiani, Andrea (2017). First two cases of severe multifocal infections caused by Klebsiella pneumoniae in Switzerland: characterization of an atypical non-K1/K2-serotype strain causing liver abscess and endocarditis. Journal of global antimicrobial resistance, 10, pp. 165-170. Elsevier 10.1016/j.jgar.2017.04.006

Donà, Valentina; Low, Nicola; Golparian, Daniel; Unemo, Magnus (2017). Recent advances in the development and use of molecular tests to predict antimicrobial resistance in Neisseria gonorrhoeae. Expert review of molecular diagnostics, 17(9), pp. 845-859. Expert Reviews 10.1080/14737159.2017.1360137

Remy, Mélissa; Schöbi, Nina; Kottanattu, Lisa; Pfister, Stefan; Duppenthaler, Andrea; Suter, Franziska Marta (2017). Cerebrospinal fluid CXCL13 as a diagnostic marker of neuroborreliosis in children: a retrospective case-control study. Journal of neuroinflammation, 14(1), p. 173. BioMed Central 10.1186/s12974-017-0948-9

Donà, Valentina; Bernasconi, Odette Joëlle; Do Couto Pires, Joao Pedro; Collaud, Alexandra; Overesch, Gudrun; Ramette, Alban Nicolas; Perreten, Vincent; Endimiani, Andrea (2017). Heterogeneous Genetic Location of mcr-1 in Colistin-Resistant Escherichia coli Isolated from Humans and Retail Chicken Meat in Switzerland: Emergence of mcr-1-Carrying IncK2 Plasmids. Antimicrobial agents and chemotherapy, 61(11) American Society for Microbiology 10.1128/AAC.01245-17

Dahdal, Suzan; Kalicki, Robert; von Steiger, Niklaus; Sendi, Parham (2017). Disseminated cryptococcal infection in a patient who had kidney transplant: discrepancy between clinical symptoms and microbiological findings. BMJ case reports, 2017 BMJ Publishing Group 10.1136/bcr-2017-219234

Do Couto Pires, Joao Pedro; Bernasconi, Odette Joëlle; Hauser, Christoph; Tinguely, Regula; Atkinson, Andrew; Perreten, Vincent; Donà, Valentina; Rauch, Andri; Furrer, Hansjakob; Endimiani, Andrea (2017). Erratum to 'Intestinal colonisation with extended-spectrum cephalosporin- and colistin-resistant Enterobacteriaceae in HIV-positive individuals in Switzerland: molecular features and risk factors' [International Journal of Antimicrobial Agents 49/4 (2017) 519-521]. International journal of antimicrobial agents, 50(2), p. 276. Elsevier 10.1016/j.ijantimicag.2017.05.002

Kapatai, Georgia; Sheppard, Carmen L.; Troxler, Lukas Jeremiah; Litt, David J.; Furrer, Julien; Hilty, Markus; Fry, Norman K. (2017). Pneumococcal 23B Molecular Subtype Identified Using Whole Genome Sequencing. Genome biology and evolution, 9(8), pp. 2145-2158. Oxford University Press 10.1093/gbe/evx092

Ruppen, Corinne; Rasmussen, Magnus; Casanova, Carlo; Sendi, Parham (2017). A 10-year observational study of Streptococcus dysgalactiae bacteraemia in adults: frequent occurrence among female intravenous drug users. Swiss medical weekly, 147(w14469), w14469. EMH Schweizerischer Ärzteverlag 10.4414/smw.2017.14469

Mika, Moana; Maurer, Josua; Korten, Insa Christina Severine; Allemann, Aurélie; Aebi, Suzanne; Brugger, Silvio D; Qi, Weihong; Frey, Urs; Latzin, Philipp; Hilty, Markus (2017). Influence of the pneumococcal conjugate vaccines on the temporal variation of pneumococcal carriage and the nasal microbiota in healthy infants: a longitudinal analysis of a case-control study. Microbiome, 5(1), p. 85. BioMed Central 10.1186/s40168-017-0302-6

Foerster, Sunniva; Desilvestro, Valentino; Hathaway, Lucy J; Althaus, Christian L; Unemo, Magnus (2017). A new rapid resazurin-based microdilution assay for antimicrobial susceptibility testing of Neisseria gonorrhoeae. Journal of antimicrobial chemotherapy, 72(7), pp. 1961-1968. Oxford University Press 10.1093/jac/dkx113

Perny, Michael; Solyga, Magdalena; Grandgirard, Denis; Roccio, Marta; Leib, Stephen; Senn, Pascal (2017). Streptococcus pneumoniae-induced ototoxicity in organ of Corti explant cultures. Hearing research, 350, pp. 100-109. Elsevier 10.1016/j.heares.2017.04.012

Lora-Tamayo, Jaime; Senneville, Éric; Ribera, Alba; Bernard, Louis; Dupon, Michel; Zeller, Valérie; Li, Ho Kwong; Arvieux, Cédric; Clauss, Martin; Uçkay, Ilker; Vigante, Dace; Ferry, Tristan; Iribarren, José Antonio; Peel, Trisha N; Sendi, Parham; Miksic, Nina Gorišek; Rodríguez-Pardo, Dolors; Del Toro, María Dolores; Fernández-Sampedro, Marta; Dapunt, Ulrike; ... (2017). The Not-So-Good Prognosis of Streptococcal Periprosthetic Joint Infection Managed by Implant Retention: The Results of a Large Multicenter Study. Clinical infectious diseases, 64(12), pp. 1742-1752. Oxford University Press 10.1093/cid/cix227

Sendi, Parham; Zimmerli, Werner (2017). The use of rifampin in staphylococcal orthopaedic-device related infections. Clinical microbiology and infection, 23(6), pp. 349-350. Elsevier 10.1016/j.cmi.2016.10.002

Büchi, Annina Elisabeth; Hoffmann, Mario; Zbinden, Stephan; Sendi, Parham (2017). Infective Endocarditis: How Do We Currently Interpret the Duke Minor Criterion "Predisposing Heart Condition" in Native Valves? Cardiology and therapy, 6(1), pp. 121-128. Springer 10.1007/s40119-016-0074-2

Donà, Valentina; Bernasconi, Odette Joëlle; Kasraian Fard, Sara; Tinguely, Regula; Endimiani, Andrea (2017). A SYBRGreen-Based Real-time PCR Method for Improved Detection of Mcr-1-mediated Colistin Resistance in Human Stool Samples. Journal of global antimicrobial resistance, 9, pp. 57-60. Elsevier 10.1016/j.jgar.2017.01.007

Damonti, Lauro; Erard, Véronique; Garbino, Jorge; Schrenzel, Jacques; Zimmerli, Stefan; Mühlethaler, Konrad; Imhof, Alexander; Zbinden, Reinhard; Fehr, Jan; Boggian, Katia; Bruderer, Thomas; Flückiger, Ursula; Frei, Reno; Orasch, Christina; Conen, Anna; Khanna, Nina; Bregenzer, Thomas; Bille, Jacques; Lamoth, Frédéric; Marchetti, Oscar; ... (2017). Catheter retention as a consequence rather than a cause of unfavorable outcome in candidemia. Intensive care medicine, 43(6), pp. 935-939. Springer 10.1007/s00134-017-4737-9

Buschor, Stefanie; Cuenca Vera, Miguelangel; Uster, Stephanie Sarah; Schären, Olivier; Balmer, Maria L; Terrazos Miani, Miguel Angel; Schürch, Christian M; Hapfelmeier, Siegfried Hektor (2017). Innate immunity restricts Citrobacter rodentium A/E pathogenesis initiation to an early window of opportunity. PLoS pathogens, 13(6), e1006476. Public Library of Science 10.1371/journal.ppat.1006476

Béguelin, Charles Antoine; Friolet, Nicole; Moradpour, Darius; Sahli, Roland; Suter, Franziska Marta; Lüthi, Alexander; Cavassini, Matthias; Günthard, Huldrych F; Battegay, Manuel; Bernasconi, Enos; Schmid, Patrick; Calmy, Alexandra; Atkinson, Andrew; Rauch, Andri; Wandeler, Gilles (2017). Impact of tenofovir on hepatitis delta virus replication in the Swiss HIV Cohort Study. Clinical infectious diseases, 64(9), pp. 1275-1278. Oxford University Press 10.1093/cid/cix125

Oberson, JS; Novak, Urban; Mansouri Taleghani, Behrouz; Baerlocher, Gabriela M.; Seipel, Katja; Mueller, BU; Leibundgut, Kurt; Zimmerli, Stefan; Pabst, Thomas (2017). Revisiting G-CSF Support for Hematologic Recovery after Autologous Transplantation in AML Patients. Annals of Hematology & Oncology, 4(5), p. 1148. Austin Publishing Group 10.26420/annhematoloncol.2017.1148

Endimiani, Andrea (22 April 2017). Direct Reporting of Resistance Mechanisms (Unpublished). In: 27th European Congress of Clinical Microbiology and Infectious Diseases.

Allemann, Aurélie; Frey, Pascal Marcel; Brugger, Silvio D; Hilty, Markus (2017). Pneumococcal carriage and serotype variation before and after introduction of pneumococcal conjugate vaccines in patients with acute otitis media in Switzerland. Vaccine, 35(15), pp. 1946-1953. Elsevier 10.1016/j.vaccine.2017.02.010

Buetti, Niccolò Ivo Marco-Aurelio; Atkinson, Andrew; Kronenberg, Andreas Oskar; Marschall, Jonas (2017). Different Epidemiology of Hospital-Acquired Bloodstream Infections Between Small Community Hospitals and Large Community Hospitals. Clinical infectious diseases, 64(7), pp. 984-985. Oxford University Press 10.1093/cid/cix040

Do Couto Pires, Joao Pedro; Bernasconi, Odette Joëlle; Hauser, Christoph; Tinguely, Regula; Atkinson, Andrew; Perreten, Vincent; Donà, Valentina; Rauch, Andri; Furrer, Hansjakob; Endimiani, Andrea (2017). Intestinal colonisation with extended-spectrum cephalosporin- and colistin-resistant Enterobacteriaceae in HIV-positive individuals in Switzerland: molecular features and risk factors. International journal of antimicrobial agents, 49(4), pp. 519-521. Elsevier 10.1016/j.ijantimicag.2017.02.004

Šestáková, Nela; Theurillat, Regula; Sendi, Parham; Thormann, Wolfgang (2017). Monitoring of cefepime in human serum and plasma by micellar electrokinetic capillary chromatography: Improvement of sample preparation and validation by liquid chromatography coupled to mass spectrometry. Journal of separation science, 40(8), pp. 1805-1814. Wiley-VCH 10.1002/jssc.201601446

Sendi, Parham; Hirzel, Cédric; Bloch, Andreas; Fischer, Urs; Jeannet, Natalie; Berlinger, Livia; Krestel, Heinz Eric (2017). Bartonella-Associated Transverse Myelitis. Emerging infectious diseases, 23(4), pp. 712-713. U.S. National Center for Infectious Diseases 10.3201/eid2304.161733

Buetti, Niccolò Ivo Marco-Aurelio; Atkinson, Andrew; Marschall, Jonas; Kronenberg, Andreas Oskar (2017). Incidence of bloodstream infections: a nationwide surveillance of acute care hospitals in Switzerland 2008-2014. BMJ open, 7(3), e013665. BMJ Publishing Group 10.1136/bmjopen-2016-013665

Buetti, Niccolò Ivo Marco-Aurelio; Atkinson, Andrew; Kottanattu, L; Bielicki, J; Marschall, Jonas; Kronenberg, Andreas (2017). Patterns and trends of pediatric bloodstream infections: a 7-year surveillance study. European journal of clinical microbiology & infectious diseases, 36(3), pp. 537-544. Springer 10.1007/s10096-016-2830-6

Sendi, Parham; Lötscher, P O; Kessler, B; Graber, P; Zimmerli, W; Clauss, M (2017). Debridement and implant retention in the management of hip periprosthetic joint infection: outcomes following guided and rapid treatment at a single centre. The Bone & Joint Journal, 99-B(3), pp. 330-336. British Editorial Society of Bone and Joint Surgery 10.1302/0301-620X.99B3.BJJ-2016-0609.R1

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