Is Evolutionary Conservation a Useful Predictor for Cancer Long Noncoding RNAs? Insights from the Cancer LncRNA Census 3.

Vancura, Adrienne; Gutierrez, Alejandro H; Hennig, Thorben; Pulido-Quetglas, Carlos; Slack, Frank J; Johnson, Rory; Haefliger, Simon (2022). Is Evolutionary Conservation a Useful Predictor for Cancer Long Noncoding RNAs? Insights from the Cancer LncRNA Census 3. Non-Coding RNA, 8(6) MDPI 10.3390/ncrna8060082

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Evolutionary conservation is a measure of gene functionality that is widely used to prioritise long noncoding RNAs (lncRNA) in cancer research. Intriguingly, while updating our Cancer LncRNA Census (CLC), we observed an inverse relationship between year of discovery and evolutionary conservation. This observation is specific to cancer over other diseases, implying a sampling bias in the selection of lncRNA candidates and casting doubt on the value of evolutionary metrics for the prioritisation of cancer-related lncRNAs.

Item Type:

Journal Article (Original Article)

Division/Institute:

04 Faculty of Medicine > Pre-clinic Human Medicine > BioMedical Research (DBMR) > DBMR Forschung Mu35 > Forschungsgruppe Med. Onkologie / Hämatologie (Erw.)
04 Faculty of Medicine > Pre-clinic Human Medicine > BioMedical Research (DBMR) > DBMR Forschung Mu35 > Forschungsgruppe Med. Onkologie / Hämatologie (Erw.)

04 Faculty of Medicine > Department of Haematology, Oncology, Infectious Diseases, Laboratory Medicine and Hospital Pharmacy (DOLS) > Clinic of Medical Oncology
04 Faculty of Medicine > Pre-clinic Human Medicine > BioMedical Research (DBMR)

Graduate School:

Graduate School for Cellular and Biomedical Sciences (GCB)

UniBE Contributor:

Vancura, Adrienne Nina, Pulido Quetglas, Carlos, Johnson, Rory Baldwin, Häfliger, Simon

Subjects:

600 Technology > 610 Medicine & health

ISSN:

2311-553X

Publisher:

MDPI

Language:

English

Submitter:

Pubmed Import

Date Deposited:

05 Jan 2023 14:24

Last Modified:

06 Jan 2023 03:15

Publisher DOI:

10.3390/ncrna8060082

PubMed ID:

36548181

Uncontrolled Keywords:

cancer conservation long noncoding RNA

BORIS DOI:

10.48350/176415

URI:

https://boris.unibe.ch/id/eprint/176415

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