Graduate School for Cellular and Biomedical Sciences (GCB)

2024

Dhokotera, Tafadzwa G; Muchengeti, Mazvita; Davidović, Maša; Rohner, Eliane; Olago, Victor; Egger, Matthias; Bohlius, Julia (2024). Gynaecologic and breast cancers in women living with HIV in South Africa: A record linkage study. International journal of cancer, 154(2), pp. 284-296. Wiley 10.1002/ijc.34712

You, Suhang; Wiest, Roland; Reyes, Mauricio (2024). SaRF: Saliency regularized feature learning improves MRI sequence classification. Computer methods and programs in biomedicine, 243(107867), p. 107867. Elsevier 10.1016/j.cmpb.2023.107867

2023

Urzì, Christian; Meyer, Christoph; Nuoffer, Jean-Marc; Vermathen, Peter (2023). Methods for Oxygen Determination in an NMR Bioreactor as a Surrogate Marker for Metabolomic Studies in Living Cell Cultures. Analytical chemistry, 95(48), pp. 17486-17493. American Chemical Society 10.1021/acs.analchem.3c02314

Balmer, Erina A; Wirdnam, Corina D; Faso, Carmen (2023). A core UPS molecular complement implicates unique endocytic compartments at the parasite-host interface in Giardia lamblia. Virulence, 14(1), p. 2174288. Taylor & Francis 10.1080/21505594.2023.2174288

Rebsamen, Michael; Jin, Baudouin Zongxin; Klail, Tomas; De Beukelaer, Sophie; Barth, Rike; Rezny-Kasprzak, Beata; Ahmadli, Uzeyir; Vulliemoz, Serge; Seeck, Margitta; Schindler, Kaspar; Wiest, Roland; Radojewski, Piotr; Rummel, Christian (2023). Clinical Evaluation of a Quantitative Imaging Biomarker Supporting Radiological Assessment of Hippocampal Sclerosis. Clinical neuroradiology, 33(4), pp. 1045-1053. Springer-Verlag 10.1007/s00062-023-01308-9

Beyeler, Raphael; Jordan, Melanie; Dorner, Lilian; He, Buyuan; Cyrklaff, Marek; Roques, Magali; Stanway, Rebecca; Frischknecht, Friedrich; Heussler, Volker (2023). Putative prefoldin complex subunit 5 of Plasmodium berghei is crucial for microtubule formation and parasite development in the mosquito. (In Press). Molecular microbiology Blackwell Science 10.1111/mmi.15196

Dzhumashev, Dzhangar; Anton-Joseph, Stenija; Morel, Victoria J; Timpanaro, Andrea; Bordon, Gregor; Piccand, Caroline; Aleandri, Simone; Luciani, Paola; Rössler, Jochen; Bernasconi, Michele (2023). Rapid liposomal formulation for nucleolin targeting to rhabdomyosarcoma cells. (In Press). European journal of pharmaceutics and biopharmaceutics Elsevier 10.1016/j.ejpb.2023.11.020

Schuler, Cordelia; Indra, Lara Isabelle; Lösch, Sandra (25 November 2023). PMI Estimation Using Graft-Fixation Devices in ACL Reconstruction (Unpublished). In: Swiss Society of Anthropology Annual Meeting 2023. Zürich. 25. November 2023.

Braun, S; Schwendener, N; Kanz, F; Lösch, S; Milella, M (25 November 2023). Dry bone and virtual modality interchangeability for the estimation of sex on the human pelvis and skull (Unpublished). In: Schweizerische Gesellschaft für Anthropologie. University of Zurich Irchel.

Palizzotto, Carlo; Ferri, Felippo; Callegari, Carolina; Rossi, Francesco; Manfredi, Marcello; Carcangiu, Laura; Gerardi, Gabriele; Ferro, Silvia; Cavicchioli, Laura; Müller, Elizabeth; Weiss, Marco; Vogt, Anne-Cathrine; Lavatelli, Francesca; Ricagno, Stefano; Hurley, Karyl; Zini, Eric (2023). Renal amyloid-A amyloidosis in cats: Characterization of proteinuria and biomarker discovery, and associations with kidney histology. (In Press). Journal of veterinary internal medicine Wiley 10.1111/jvim.16920

Stojanovski, Klement; Gheorghe, Ioana; Lenart, Peter; Lanjuin, Anne; Mair, William B; Towbin, Benjamin D (2023). Maintenance of appropriate size scaling of the C. elegans pharynx by YAP-1. Nature Communications, 14(1), p. 7564. Springer Nature 10.1038/s41467-023-43230-1

Mehinagic, Kemal; Liniger, Matthias; Samoilenko, Maksym; Soltermann, Nick; Gerber, Markus; Ruggli, Nicolas (2023). A Sensitive Luciferase Reporter Assay for the Detection of Infectious African Swine Fever Virus. (In Press). Journal of virological methods, 323, p. 114854. Elsevier 10.1016/j.jviromet.2023.114854

Atchou, Kodzo; Berger, Bianca Manuela; Heussler, Volker; Ochsenreiter, Torsten (2023). Pre-gelation staining expansion microscopy (PS-ExM) for visualisation of the Plasmodium liver stage. Journal of cell science, 136(22) Company of Biologists 10.1242/jcs.261377

Sprague, Daniel J; Kaethner, Marc; Park, Sang-Kyu; Rohr, Claudia M; Harris, Jade L; Maillard, David; Spangenberg, Thomas; Lundström-Stadelmann, Britta; Marchant, Jonathan S (2023). The Anthelmintic Activity of Praziquantel Analogs Correlates with Structure-Activity Relationships at TRPMPZQ Orthologs. ACS medicinal chemistry letters, 14(11), pp. 1537-1543. American Chemical Society 10.1021/acsmedchemlett.3c00350

Timpanaro, Andrea; Piccand, Caroline; Dzhumashev, Dzhangar; Anton Joseph, Stenija; Robbi, Andrea; Moser, Janine; Rössler, Jochen; Bernasconi, Michele (2023). CD276-CAR T cells and Dual-CAR T cells targeting CD276/FGFR4 promote rhabdomyosarcoma clearance in orthotopic mouse models. Journal of experimental & clinical cancer research, 42(1), p. 293. BioMed Central 10.1186/s13046-023-02838-3

Bannasch, Danika L; Oertle, Danielle T; Vo, Julia; Batcher, Kevin L; Stern, Joshua A; Kaplan, Joanna L; Li, Ronald H L; Madden, Indiana E; Christen, Matthias; Leeb, Tosso; Joshi, Nikhil (2023). Naturally occurring canine laminopathy leading to a dilated and fibrosing cardiomyopathy in the Nova Scotia Duck Tolling Retriever. Scientific Reports, 13(1), p. 19077. Nature Publishing Group 10.1038/s41598-023-46601-2

Mostacci, Nadja; Wüthrich, Tsering Monika; Siegwald, Léa; Kieser, Silas; Steinberg, Ruth; Sakwinska, Olga; Latzin, Philipp; Korten, Insa; Hilty, Markus (2023). Informed interpretation of metagenomic data by StrainPhlAn enables strain retention analyses of the upper airway microbiome. (In Press). mSystems, e0072423, e0072423. American Society for Microbiology 10.1128/msystems.00724-23

Reinhard, Jochen; Huber, Renata; Schaeren, Gishan; Hajdas, Irka; Indra, Lara Isabelle; Lösch, Sandra; Koyun, Erdem; Caviglia, Claude (2023). Baar, Sternmattstrasse 10, Erweiterung Schulanlage Sternmatt 1: Aushubüberwachung und Notgrabung. In: Tugium. Jahrbuch des Staatsarchivs des Kantons Zug, des Amtes für Denkmalpflege und archäologie, des Kantonalen Museums für Urgeschichte(n) Zug und des Museums Burg Zug. Regierungsrat des Kantons Zug

Dziadosz, Martyna; Rizzo, Rudy; Kyathanahally, Sreenath P; Kreis, Roland (2023). Denoising single MR spectra by deep learning: Miracle or mirage? Magnetic resonance in medicine, 90(5), pp. 1749-1761. Wiley 10.1002/mrm.29762

Braun, Sandra; Schwendener, Nicole; Kanz, Fabian; Lösch, Sandra; Milella, Marco (2023). What we see is what we touch? Sex estimation on the pelvis in virtual anthropology. International journal of legal medicine, 137(6), pp. 1839-1852. Springer 10.1007/s00414-023-03034-w

Guyer, Gian; Mueller, Silvan; Wyss, Yanick; Bertholet, Jenny; Schmid, Remo; Stampanoni, Marco F M; Manser, Peter; Fix, Michael K (2023). Technical note: A collision prediction tool using Blender. Journal of applied clinical medical physics, 24(11), e14165. American Association of Physicists in Medicine 10.1002/acm2.14165

Hong, Jimin; Lu, Jiaying; Liu, Fengtao; Wang, Min; Li, Xinyi; Clement, Christoph; Lopes, Leonor; Brendel, Matthias; Rominger, Axel; Yen, Tzu-Chen; Guan, Yihui; Tian, Mei; Wang, Jian; Zuo, Chuantao; Shi, Kuangyu (2023). Uncovering distinct progression patterns of tau deposition in progressive supranuclear palsy using [18F]Florzolotau PET imaging and subtype/stage inference algorithm. EBioMedicine, 97(104835), p. 104835. Elsevier 10.1016/j.ebiom.2023.104835

Andonie, Raphael R.; Wimmer, Wilhelm; Wildhaber, Reto A; Caversaccio, Marco; Weder, Stefan (2023). Real-Time Feature Extraction From Electrocochleography With Impedance Measurements During Cochlear Implantation Using Linear State-Space Models. IEEE transactions on bio-medical engineering, 70(11), pp. 3137-3146. Institute of Electrical and Electronics Engineers 10.1109/TBME.2023.3276993

Indra, Lara; Lösch, Sandra; Errickson, David; Finaughty, Devin (2023). Forensic experiments on animal scavenging: A systematic literature review on what we have and what we need. Forensic science international, 353, p. 111862. Elsevier Scientific Publ. Ireland 10.1016/j.forsciint.2023.111862

Guyer, Gian; Mueller, Silvan; Mackeprang, Paul-Henry; Frei, Daniel; Volken, Werner; Aebersold, Daniel M; Lössl, Kristina; Manser, Peter; Fix, Michael K (2023). Delivery time reduction for mixed photon-electron radiotherapy by using photon MLC collimated electron arcs. Physics in medicine and biology, 68(21) IOP Publishing 10.1088/1361-6560/ad021a

Garcia-Seyda, Nicolas; Song, Solene; Seveau de Noray, Valentine; David-Broglio, Luc; Matti, Christoph; Artinger, Marc; Dupuy, Florian; Biarnes-Pelicot, Martine; Valignat, Marie-Pierre; Legler, Daniel F; Bajénoff, Marc; Theodoly, Olivier (2023). Naive T lymphocytes chemotax long distance to CCL21 but not to a source of bioactive S1P. iScience, 26(10), p. 107695. Elsevier 10.1016/j.isci.2023.107695

Krenger, Pascal S; Josi, Romano; Sobczak, Jan; Velazquez, Thalia L C; Balke, Ina; Skinner, Murray A; Kramer, Matthias F; Scott, Callum J W; Hewings, Simon; Heath, Matthew D; Zeltins, Andris; Bachmann, Martin F (2023). Influence of antigen density and TLR ligands on preclinical efficacy of a VLP-based vaccine against peanut allergy. (In Press). Allergy Wiley 10.1111/all.15897

Bagnoud, Maud; Remlinger, Jana; Joly, Sandrine; Massy, Marine; Salmen, Anke; Chan, Andrew; Karathanassis, Dimitris; Evangelopoulos, Maria-Eleptheria; Hoepner, Robert (2023). Predicting glucocorticoid resistance in multiple sclerosis relapse via a whole blood transcriptomic analysis. (In Press). CNS neuroscience & therapeutics Wiley 10.1111/cns.14484

Metekoua, Carole; Ruffieux, Yann; Olago, Victor; Dhokotera, Tafadzwa; Egger, Matthias; Bohlius, Julia; Rohner, Eliane; Muchengeti, Mazvita (2023). Decreasing Incidence of Conjunctival Squamous Cell Carcinoma in People with HIV in South Africa. Journal of the National Cancer Institute JNCI, 115(10), pp. 1213-1219. Oxford University Press 10.1093/jnci/djad119

Mahapatra, Dwarikanath; Jimeno Yepes, Antonio Jose; Kuanar, Shiba; Roy, Sudipta; Bozorgtabar, Behzad; Reyes, Mauricio; Ge, Zongyuan (8 October 2023). Class Specific Feature Disentanglement and Text Embeddings for Multi-label Generalized Zero Shot CXR Classification. In: International Conference on Medical Image Computing and Computer-Assisted Intervention. Lecture Notes in Computer Science: Vol. 14221 (pp. 276-286). Springer 10.1007/978-3-031-43895-0_26

Kamath, Amith; Willmann, Jonas; Andratschke, Nicolaus; Reyes, Mauricio (8 October 2023). Do We Really Need that Skip-Connection? Understanding Its Interplay with Task Complexity. In: International Conference on Medical Image Computing and Computer-Assisted Intervention. Lecture Notes in Computer Science: Vol. 14223 (pp. 302-311). Springer 10.1007/978-3-031-43901-8_29

Deng, Haibin; Ge, Huixiang; Dubey, Christelle; Losmanova, Tereza; Medova, Michaela; Konstantinidou, Georgia; Mutlu, Seyran Mathilde; Birrer, Fabienne Esther; Brodie, Tess Melinda; Stroka, Deborah; Wang, Wenxiang; Peng, Ren-Wang; Dorn, Patrick; Marti, Thomas Michael (2023). An optimized protocol for the generation and monitoring of conditional orthotopic lung cancer in the KP mouse model using an adeno-associated virus vector compatible with biosafety level 1. (In Press). Cancer immunology, immunotherapy : CII Springer 10.1007/s00262-023-03542-z

Krenger, Pascal S; Sobczak, Jan; Paolucci, Marta; Kündig, Thomas M; Johansen, Pål; Vogel, Monique; Bachmann, Martin F (2023). BALB/c and C3H mice are both suitable as peanut allergy models. (In Press). Clinical and experimental allergy Wiley 10.1111/cea.14398

Papapostolou, Irida; Bochen, Florian; Peinelt, Christine; Maldifassi, Maria Constanza (2023). A Simple and Fast Method for the Formation and Downstream Processing of Cancer-Cell-Derived 3D Spheroids: An Example Using Nicotine-Treated A549 Lung Cancer 3D Spheres. Methods and protocols, 6(5) MDPI AG 10.3390/mps6050094

Gagliardi, Paolo Armando; Grädel, Benjamin; Jacques, Marc-Antoine; Hinderling, Lucien; Ender, Pascal; Cohen, Andrew R; Kastberger, Gerald; Pertz, Olivier; Dobrzynski, Maciej (2023). Automatic detection of spatio-temporal signaling patterns in cell collectives. The Journal of cell biology, 222(10) Rockefeller Institute Press 10.1083/jcb.202207048

Santoni, Bastien Le Gars; Niggli, Luzia; Dolder, Silvia; Loeffel, Olivier; Sblendorio, Gabrielle; Maazouz, Yassine; Alexander, Duncan; Heuberger, Roman; Stähli, Christoph; Döbelin, Nicola; Bowen, Paul; Hofstetter, Wilhelm; Bohner, Marc (2023). Influence of the sintering atmosphere on the physico-chemical properties and the osteoclastic resorption of β-tricalcium phosphate cylinders. Acta biomaterialia, 169, pp. 566-578. Elsevier 10.1016/j.actbio.2023.08.012

Pitton, Melissa; Valente, Luca G; Oberhaensli, Simone; Casanova, Carlo; Sendi, Parham; Schnegg, Bruno; Jakob, Stephan M; Cameron, David R; Que, Yok-Ai; Fürholz, Monika (2023). Dynamics of bacterial pathogens at the driveline exit site in patients with ventricular assist devices: a prospective, observational, single-centre cohort study. The Journal of heart and lung transplantation, 42(10), pp. 1445-1454. Elsevier 10.1016/j.healun.2023.05.016

Kiener, Sarah; Åhman, Susanne; Jagannathan, Vidhya; Soto, Sara; Leeb, Tosso (2023). Heterozygous KRT10 missense variant in a Chihuahua with severe epidermolytic ichthyosis. Animal genetics, 54(5), pp. 652-654. Wiley 10.1111/age.13341

Remlinger, Jana; Bagnoud, Maud; Meli, Ivo; Massy, Marine; Linington, Christopher; Chan, Andrew; Bennett, Jeffrey L; Hoepner, Robert; Enzmann, Volker; Salmen, Anke (2023). Modelling MOG antibody-associated disorder and neuromyelitis optica spectrum disorder in animal models: Spinal cord manifestations. Multiple Sclerosis and Related Disorders, 78(104892), p. 104892. Elsevier 10.1016/j.msard.2023.104892

Tscherrig, Vera; Cottagnoud, Sophie; Haesler, Valérie; Renz, Patricia; Surbek, Daniel; Schoeberlein, Andreina; Joerger-Messerli, Marianne Simone (2023). MicroRNA Cargo in Wharton's Jelly MSC Small Extracellular Vesicles: Key Functionality to In Vitro Prevention and Treatment of Premature White Matter Injury. Stem cell reviews and reports, 19(7), pp. 2447-2464. Springer 10.1007/s12015-023-10595-1

Zbinden, Lukas; Catucci, Damiano; Suter, Yannick Raphael; Hulbert, Leona; Berzigotti, Annalisa; Brönnimann, Michael; Ebner, Lukas; Christe, Andreas; Obmann, Verena Carola; Sznitman, Raphael; Huber, Adrian Thomas (2023). Automated liver segmental volume ratio quantification on non-contrast T1-Vibe Dixon liver MRI using deep learning. European journal of radiology, 167, p. 111047. Elsevier 10.1016/j.ejrad.2023.111047

Alexandru, Mihaela; Veil, Raphaël; Rubbo, Bruna; Goutaki, Myrofora; Kim, Sookyung; Lam, Yin Ting; Nevoux, Jérôme; Lucas, Jane S; Papon, Jean-François (2023). Ear and upper airway clinical outcome measures for use in primary ciliary dyskinesia research: a scoping review. European respiratory review, 32(169), p. 220200. European Respiratory Society 10.1183/16000617.0200-2022

Abdeldaim, Dalia T; Schindowski, Katharina (2023). Fc-Engineered Therapeutic Antibodies: Recent Advances and Future Directions. Pharmaceutics, 15(10) MDPI 10.3390/pharmaceutics15102402

Gurzeler, Lukas-Adrian; Link, Marion; Ibig, Yvonne; Schmidt, Isabel; Galuba, Olaf; Schoenbett, Julian; Gasser-Didierlaurant, Christelle; Parker, Christian N; Mao, Xiaohong; Bitsch, Francis; Schirle, Markus; Couttet, Philipp; Sigoillot, Frederic; Ziegelmüller, Jana; Uldry, Anne-Christine; Teodorowicz, Wojciech; Schmiedeberg, Niko; Mühlemann, Oliver; Reinhardt, Jürgen (2023). Drug-induced eRF1 degradation promotes readthrough and reveals a new branch of ribosome quality control. Cell reports, 42(9), p. 113056. Cell Press 10.1016/j.celrep.2023.113056

Brogli, Rebecca; Cristodero, Marina; Schneider, André; Polacek, Norbert (2023). A ribosome-bound tRNA half stimulates mitochondrial translation during stress recovery in Trypanosoma brucei. Cell reports, 42(9), p. 113112. Cell Press 10.1016/j.celrep.2023.113112

Yeoh, Wen Jie; Krebs, Philippe (2023). SHIP1 and its role for innate immune regulation - novel targets for immunotherapy. (In Press). European journal of immunology(e2350446), e2350446. Wiley-VCH 10.1002/eji.202350446

Lam, Yin Ting (2023). Upper respiratory disease and qualitative studies in primary ciliary dyskinesia. (Unpublished). (Dissertation, University of Bern, Faculty of Medicine, Faculty of Science and the Vetsuisse Faculty)

Schilardi, Giulia; Kralik, Jakub; Kleinlogel, Sonja (2023). Selective Block of Upregulated Kv1.3 Potassium Channels in ON-Bipolar Cells of the Blind Retina Enhances Optogenetically Restored Signaling. International journal of molecular sciences, 24(18) MDPI 10.3390/ijms241814207

Bagnoud, Maud; Remlinger, Jana; Massy, Marine; Lodygin, Dmitri; Salmen, Anke; Chan, Andrew; Lühder, Fred; Hoepner, Robert (2023). In Vivo and In Vitro Evidence for an Interplay between the Glucocorticoid Receptor and the Vitamin D Receptor Signaling. Cells, 12(18) MDPI 10.3390/cells12182291

Naef, Aileen C; Jeitziner, Marie-Madlen; Jakob, Stephan M; Müri, René M; Nef, Tobias (2023). Creating Custom Immersive 360-Degree Videos for Use in Clinical and Nonclinical Settings: Tutorial. JMIR medical education, 9, e42154. JMIR Publications 10.2196/42154

Esposito, Roberta; Lanzos, Andrés; Uroda, Tina; Ramnarayanan, Sunandini; Büchi, Isabel; Polidori, Taisia; Guillen-Ramirez, Hugo; Mihaljevic, Ante; Merlin, Bernard Mefi; Mela, Lia; Zoni, Eugenio; Hovhannisyan, Lusine; McCluggage, Finn; Medo, Matúš; Basile, Giulia; Meise, Dominik F; Zwyssig, Sandra; Wenger, Corina; Schwarz, Kyriakos; Vancura, Adrienne; ... (2023). Author Correction: Tumour mutations in long noncoding RNAs enhance cell fitness. Nature communications, 14(1), p. 5463. Nature Publishing Group 10.1038/s41467-023-41288-5

Wróbel, Tomasz M; Sharma, Katyayani; Mannella, Iole; Oliaro-Bosso, Simonetta; Nieckarz, Patrycja; du Toit, Therina; Voegel, Clarissa Daniela; Rojas Velazquez, Maria Natalia; Yakubu, Jibira; Matveeva, Anna; Therkelsen, Søren; Jørgensen, Flemming Steen; Pandey, Amit V; Pippione, Agnese C; Lolli, Marco L; Boschi, Donatella; Björkling, Fredrik (2023). Exploring the Potential of Sulfur Moieties in Compounds Inhibiting Steroidogenesis. Biomolecules, 13(9) MDPI 10.3390/biom13091349

Neyer, Peter J; Kaboré, Bérenger; Nakas, Christos T.; Hartmann, Britta; Post, Annelies; Diallo, Salou; Tinto, Halidou; Hammerer-Lercher, Angelika; Largiadèr, Carlo R; van der Ven, Andre J; Huber, Andreas R (2023). Exploring the host factors affecting asymptomatic Plasmodium falciparum infection: insights from a rural Burkina Faso study. Malaria journal, 22(1), p. 252. BioMed Central 10.1186/s12936-023-04686-0

Dassler, K; Zurfluh, K; Stephan, R; Willi, B (2023). Educational intervention to improve infection prevention and control practices in four companion animal clinics in Switzerland. The journal of hospital infection, 139, pp. 121-133. Elsevier 10.1016/j.jhin.2023.06.002

Zhu, Xilei; von Werdt, Livia; Zappalà, Graziano; Sculean, Anton; Eick, Sigrun; Stähli, Alexandra (2023). In vitro activity of hyaluronic acid and human serum on periodontal biofilm and periodontal ligament fibroblasts. Clinical oral investigations, 27(9), pp. 5021-5029. Springer-Verlag 10.1007/s00784-023-05121-z

Remlinger, Jana; Bagnoud, Maud; Meli, Ivo; Massy, Marine; Hoepner, Robert; Linington, Christopher; Chan, Andrew; Bennett, Jeffrey L; Enzmann, Volker; Salmen, Anke (2023). Modeling MOG Antibody-Associated Disorder and Neuromyelitis Optica Spectrum Disorder in Animal Models: Visual System Manifestations. Neurology: Neuroimmunology and Neuroinflammation, 10(5) Wolters Kluwer Health 10.1212/NXI.0000000000200141

Thompson, Danielle; Cismaru, Christiana Victoria; Rougier, Jean-Sébastien; Schwemmle, Martin; Zimmer, Gert (2023). The M2 proteins of bat influenza A viruses reveal atypical features compared to conventional M2 proteins. Journal of virology, 97(8), e0038823. American Society for Microbiology 10.1128/jvi.00388-23

Campos-Madueno, Edgar I; Aldeia, Claudia; Perreten, Vincent; Sendi, Parham; Moser, Aline I; Endimiani, Andrea (2023). Detection of blaCTX-M and blaDHA genes in stool samples of healthy people: comparison of culture- and shotgun metagenomic-based approaches. Frontiers in Microbiology, 14(1236208), p. 1236208. Frontiers 10.3389/fmicb.2023.1236208

Simon, Rebecca; Kiener, Sarah; Thom, Nina; Schäfer, Laura; Müller, Janina; Schlohsarczyk, Elfi K; Gärtner, Ulrich; Herden, Christiane; Leeb, Tosso; Lühken, Gesine (2023). Identification of an ADAMTS2 frameshift variant in a cat family with Ehlers-Danlos syndrome. G3 Genes Genomes Genetics, 13(9) Genetics Society of America 10.1093/g3journal/jkad152

Naef, Pascal; Radpour, Ramin; Jaeger-Ruckstuhl, Carla A; Bodmer, Nils; Baerlocher, Gabriela M; Doehner, Hartmut; Doehner, Konstanze; Riether, Carsten; Ochsenbein, Adrian F (2023). IL-33-ST2 signaling promotes stemness in subtypes of myeloid leukemia cells through the Wnt and Notch pathways. Science signaling, 16(800), eadd7705. 10.1126/scisignal.add7705

Buchwalder, Sébastien; Hersberger, Mario; Rebl, Henrike; Seemann, Susanne; Kram, Wolfgang; Hogg, Andreas; Tvedt, Lars G. W.; Clausen, Ingelin; Burger, Jürgen (2023). An Evaluation of Parylene Thin Films to Prevent Encrustation for a Urinary Bladder Pressure MEMS Sensor System. Polymers, 15(17), p. 3559. MDPI 10.3390/polym15173559

Alings, Fiona; Scharmann, Karin; Eggers, Cristian; Böttcher, Bettina; Sokołowski, Mikołaj; Shvetsova, Ekaterina; Sharma, Puneet; Roth, Joël; Rashiti, Leon; Glatt, Sebastian; Brunke, Sascha; Leidel, Sebastian A (2023). Ncs2* mediates in vivo virulence of pathogenic yeast through sulphur modification of cytoplasmic transfer RNA. Nucleic acids research, 51(15), pp. 8133-8149. Oxford University Press 10.1093/nar/gkad564

Braun, Sandra; Ridel, Alison F.; L'Abbé, Ericka N.; Oettlé, Anna C. (24 August 2023). Analysis of the hard-tissue menton shape in adult South Africans using cone-beam computed tomography (CBCT) scans (Unpublished). In: Faculty Research Day, Faculty of Health Sciences, University of Pretoria. August 24, 2023.

Campos-Madueno, Edgar I; Aldeia, Claudia; Sendi, Parham; Endimiani, Andrea (2023). Escherichia ruysiae May Serve as a Reservoir of Antibiotic Resistance Genes across Multiple Settings and Regions. Microbiology spectrum, 11(4), e0175323. American Society for Microbiology 10.1128/spectrum.01753-23

Anderegg, Nanina; Schwab, Tiana; Borcard, Loïc; Mugglin, Catrina; Keune-Dübi, Bettina; Ramette, Alban; Fenner, Lukas (2023). Population-based SARS-CoV-2 whole genome sequencing and contact tracing during the COVID-19 pandemic in Switzerland. Journal of infectious diseases, 228(3), pp. 251-260. Oxford University Press 10.1093/infdis/jiad074

Croci, Eleonora; Hess, Hanspeter; Warmuth, Fabian; Künzler, Marina; Börlin, Sean; Baumgartner, Daniel; Müller, Andreas Marc; Gerber, Kate; Mündermann, Annegret (2023). Fully automatic algorithm for detecting and tracking anatomical shoulder landmarks on fluoroscopy images with artificial intelligence. (In Press). European radiology Springer-Verlag 10.1007/s00330-023-10082-8

Pernet, Vincent; Joly, Sandrine; Spiegel, Sebastian; Meli, Ivo; Idriss, Sherif; Maigler, Frank; Mdzomba, Julius Baya; Roenneke, Anna K; Franceschini, Alessandra; Silvestri, Ludovico; Pavone, Francesco S; Calamai, Martino; Schindowski, Katharina; Chan, Andrew (2023). Nogo-A antibody delivery through the olfactory mucosa mitigates experimental autoimmune encephalomyelitis in the mouse CNS. Cell death discovery, 9(1), p. 290. Nature 10.1038/s41420-023-01588-7

Fischer, Jérôme Paul; Bátora, Dániel; Dick, Luca Julian; Kaderli, Reto Martin; Gertsch, Jürg; Lochner, Martin (8 August 2023). Developing Molecular Tools for the Study and Detection of Calcium-Sensing Receptor [MC-112]. CHIMIA, 77(7/8), p. 526. Schweizerische Chemische Gesellschaft

Gerber, Christian Elias; Grossenbacher, Philipp; Singer, Simon Alex; Lochner, Martin (8 August 2023). Development of novel 4-chloro-2-(2-phenoxyacetamido)benzoic acid-based TRPM4 inhibitors [MC-115]. CHIMIA, 77(7/8), p. 526. Schweizerische Chemische Gesellschaft

Papapostolou, Irida; Ross, Daniela; Bochen, Florian; Peinelt, Christine; Maldifassi, Maria Constanza (2023). Contribution of the α5 nAChR Subunit and α5SNP to Nicotine-Induced Proliferation and Migration of Human Cancer Cells. Cells, 12(15) MDPI 10.3390/cells12152000

van Os, Lisette; Yeoh, Wen Jie; Witz, Guillaume; Ferrari, Dario; Krebs, Philippe; Chandorkar, Yashoda; Zeinali, Soheila; Sengupta, Arunima; Guenat, Olivier (2023). Immune cell extravasation in an organ-on-chip to model lung inflammation. European journal of pharmaceutical sciences, 187, p. 106485. Elsevier 10.1016/j.ejps.2023.106485

Menze, Johanna; Croci, Eleonora; Andersen, Michael Skipper; Hess, Hanspeter; Ferguson, Stephen J.; Müller, Andreas Marc; Mündermann, Annegret; Gerber, Kate (1 August 2023). Towards a Musculoskeletal Shoulder Model Depicting Glenohumeral Translations Considering Bony, Ligamentous and Muscular Stability Constraints. In: XXIX Congress of International/Japanese Society of Biomechanics. Fukuoka, Japan. 30th July - 3rd August 2023.

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Tascon-Morales, Sergio; Márquez-Neila, Pablo; Sznitman, Raphael (2023). Logical Implications for Visual Question Answering Consistency. In: IEEE / CVF Computer Vision and Pattern Recognition Conference (CVPR). Vancouver. Jun 18-22, 2023.

Pfyffer, Dario; Zimmermann, Sandra; Şimşek, Kadir; Kreis, Roland; Freund, Patrick; Seif, Maryam (2023). Magnetic resonance spectroscopy investigation in the right human hippocampus following spinal cord injury. Frontiers in neurology, 14(1120227), p. 1120227. Frontiers Media S.A. 10.3389/fneur.2023.1120227

van Os, Lisette; Engelhardt, Britta; Guenat, Olivier T. (2023). Integration of immune cells in organs-on-chips: a tutorial. Frontiers in Bioengineering and Biotechnology, 11, p. 1191104. Frontiers Media 10.3389/fbioe.2023.1191104

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Müller, Joachim; Preza, Matías; Kaethner, Marc; Rufener, Reto; Braga, Sophie; Uldry, Anne-Christine; Heller, Manfred; Lundström-Stadelmann, Britta (2023). Targeted and non-targeted proteomics to characterize the parasite proteins of Echinococcus multilocularis metacestodes. Frontiers in cellular and infection microbiology, 13, p. 1170763. Frontiers 10.3389/fcimb.2023.1170763

Tascon-Morales, Sergio; Márquez-Neila, Pablo; Sznitman, Raphael (2023). Localized Questions in Medical Visual Question Answering. In: International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI). Lecture Notes in Computer Science: Vol. 14221 (pp. 361-370). Springer 10.1007/978-3-031-43895-0_34

Martinez de LaPiscina, Idoia; Kouri, Chrysanthi; Aurrekoetxea, Josu; Sanchez, Mirian; Naamneh Elzenaty, Rawda; Sauter, Kay-Sara; Camats, Núria; Grau, Gema; Rica, Itxaso; Rodriguez, Amaia; Vela, Amaia; Cortazar, Alicia; Alonso-Cerezo, Maria Concepción; Bahillo, Pilar; Bertholt, Laura; Esteva, Isabel; Castaño, Luis; Flück, Christa E (2023). Genetic reanalysis of patients with a difference of sex development carrying the NR5A1/SF-1 variant p.Gly146Ala has discovered other likely disease-causing variations. PLoS ONE, 18(7), e0287515. Public Library of Science 10.1371/journal.pone.0287515

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Herzog, Elio L; Kreuzer, Marco; Zinkernagel, Martin S; Zysset-Burri, Denise C (2023). Challenges and insights in the exploration of the low abundance human ocular surface microbiome. Frontiers in cellular and infection microbiology, 13(1232147), p. 1232147. Frontiers 10.3389/fcimb.2023.1232147

Milusev, Anastasia; Ren, Jianfang; Despont, Alain; Shaw, Jane; Längin, Matthias; Bender, Martin; Abicht, Jan-Michael; Mokelke, Maren; Radan, Julia; Neumann, Elisabeth; Kemter, Elisabeth; Klymiuk, Nikolai; Ayares, David; Wolf, Eckhard; Reichart, Bruno; Sorvillo, Nicoletta; Rieben, Robert (2023). Glycocalyx dynamics and the inflammatory response of genetically modified porcine endothelial cells. Xenotransplantation, 30(5), e12820. Wiley 10.1111/xen.12820

Ernst, Alexander; Piragyte, Indre; MP, Ayisha Marwa; Le, Ngoc Dung; Grandgirard, Denis; Leib, Stephen L.; Oates, Andrew; Mercader, Nadia (2023). Identification of side effects of COVID-19 drug candidates on embryogenesis using an integrated zebrafish screening platform. Scientific reports, 13(1), p. 17037. Springer Nature 10.1038/s41598-023-43911-3

Naef, Aileen C; Gerber, Stephan M; Single, Michael; Müri, René M; Haenggi, Matthias; Jakob, Stephan M; Jeitziner, Marie-Madlen; Nef, Tobias (2023). Effects of immersive virtual reality on sensory overload in a random sample of critically ill patients. Frontiers in medicine, 10(1268659), p. 1268659. Frontiers 10.3389/fmed.2023.1268659

Gigon, Lea; Fettrelet, Timothée; Miholic, Marta; McLeish, Kenneth R; Yousefi, Shida; Stojkov, Darko; Simon, Hans-Uwe (2023). Syntaxin-4 and SNAP23 are involved in neutrophil degranulation, but not in the release of mitochondrial DNA during NET formation. Frontiers in immunology, 14(1272699), p. 1272699. Frontiers Research Foundation 10.3389/fimmu.2023.1272699

Moccia, Valentina; Vogt, Anne-Cathrine; Ricagno, Stefano; Callegari, Carolina; Vogel, Monique; Zini, Eric; Ferro, Silvia (2023). Histological evaluation of the distribution of systemic AA-amyloidosis in nine domestic shorthair cats. PLoS ONE, 18(11), e0293892. Public Library of Science 10.1371/journal.pone.0293892

Bermudez-Lekerika, Paola; Tseranidou, Sofia; Kanelis, Exarchos; Crump, Katherine B.; Le Maitre, Christine; Wuertz-Kosak, Karin; Alexopoulus, Leonidas G.; Noailly, Jérôme; Gantenbein, Benjamin (2023). The metabolic role of IL-4 and IL-10 in Intervertebral Disc Degeneration. In: 31st Annual Meeting of the European Orthopaedic Research Society. Porto, Portugal. 27-29 September.

Tseranidou, Sofia; Bermudez-Lekerika, Paola; Segarra-Queralt, Maria; Gantenbein, Benjamin; Le Maitre, Christine; Piñero, Janet; Noailly, Jérôme (2023). A model to explore intervertebral disc cell activity in adverse biochemical environments. In: 31st Annual Meeting of the European Orthopaedic Research Society. Porto, Portugal. 27-29 September.

Torabi Rahvar, Parisa; Schlagenhof, Leon Max; Abdekhodaie, M. J.; Gantenbein, Benjamin (2023). Feasibility study of injectable intervertebral disc-mimetic cell encapsulated microgels for nucleus pulposus regeneration (Unpublished). In: 33rd Annual Conference of the European Society for Biomaterials. Davos, Switzerland. 4-8 September.

Corluka, Slavko; Croft, Andreas Shaun; Garnier, Manuel; Wangler, Sebastian; Moser, Helen Laura; Künzler, Michael; Gantenbein, Benjamin; Schär, Michael (2023). Development of a novel bioreactor for the mechanbiological study of the tendon-bone interface. In: Annual Meeting of the Swiss Society of Biomedical Engineering. 13 September.

Nüesch, Andrea; Kanelis, Exarchos; Alexopoulus, Leonidas; Williams, Frances; Gantenbein, Benjamin; Lacey, Melissa; Breakwell, Lee; Le Maitre, Christine (2023). Gram positive bacteria within the intervertebral disc and their potential influence on nucleus pulposus cells. In: Annual Meeting of the Swiss Society of Biomedical Engineering. 13 September.

Crump, Katherine B.; Bermudez-Lekerika, Paola; Alminawi, Ahmad; Geris, Liesbet; Noailly, Jérôme; Gantenbein, Benjamin (2023). In-vitro investigation of compression and catabolic cytokines on human cartilage endplate cells in agarose. In: Annual Meeting of the Swiss Society of Biomedical Engineering. 13 September.

Chen, Shuimu; Croft, Andreas S.; Bigdon, Sebastian; Li, Zhen; Oberli, Andrea E.; Crump, Katherine B.; Gantenbein, Benjamin (2023). Conditioned medium from intervertebral disc inhibits autologous mesenchymal stromal cells and osteoblasts. In: Annual Meeting of the Swiss Society of Biomedical Engineerin. 13 September.

Rüttimann, Silvan; Schlagenhof, Leon; Croft, Andreas S.; Oberli, Andrea; Gantenbein, Benjamin (2023). Exploring a novel spheroid 3D cell culture system for Tie2+ nucleus pulposus cells of the intervertebral disc. In: Annual Meeting of the Swiss Society of Biomedical Engineering. 13 September.

Crump, Katherine Briana; Alminawi, Ahmad; Bermudez Lekerika, Paola; Segarra Queralt, Maria; Croft, Andreas Shaun; Geris, Liesbet; Noailly, Jérôme; Gantenbein, Benjamin (2023). In-Vitro and In-Silico Investigation of Dynamic Compression on Cartilage Endplate Cells in Agarose (Unpublished). In: Tissue Engineering and Regenerative Medicine International Society (TERMIS) European Chapter Meeting. 28-31 March.

Bermudez Lekerika, Paola; Kanelis, Exarchos; Croft, Andreas Shaun; Crump, Katherine Briana; Wuertz Kosak, Karin; Le Maitre, Christine; Alexopoulus, Leonidas; Rütsche, Dominic; Gantenbein, Benjamin (2023). Sulfated hydrogels as primary intervertebral disc cell culture systems (Unpublished). In: Tissue Engineering and Regenerative Medicine International Society (TERMIS) European Chapter Meeting. Manchester, UK. 28-31 March.

Alminawi, Ahmad; Crump, Katherine Briana; Bermudez Lekerika, Paola; Croft, Andreas Shaun; Geeroms, Carla; Le Maitre, Christine; Gantenbein, Benjamin; Geris, Liesbet (2023). Direction Dependent Mass Transport Through the Cartilage Endplate (Unpublished). In: Tissue Engineering and Regenerative Medicine International Society (TERMIS) European Chapter Meeting. Manchester, UK. 28-31 March.

Guerrero, Julien; Oberli, Andrea; Ille, Fabian; Eberle, Patric; Desprat, Romain; Bensadoun, Paul; Milhavet, Olivier; Camus, Anne; Lemaitre, Jean Marc; Guicheux, Jérôme; Tryfonidou, Marianna; Gantenbein, Benjamin (2023). Bulk RNA next generation sequencing of native donor-matched Human Tie2+ Progenitors versus Tie2- Cells (Unpublished). In: Tissue Engineering and Regenerative Medicine International Society (TERMIS) European Chapter Meeting. Manchester, UK. 28-31 March.

Gantenbein, Benjamin (ed.) (2023). Intervertebral Disc Regeneration II. Basel: MDPI 10.3390/books978-3-0365-8199-6

Buchwalder, Sébastien; Bourgeois, Florian; Leon, Juan J. Diaz; Hogg, Andreas; Burger, Jürgen (2023). Parylene-AlOx Stacks for Improved 3D Encapsulation Solutions. Coatings, 13(11), p. 1942. MDPI 10.3390/coatings13111942

Croft, AS; Fuhrer, J; Wöltje, M.; Gantenbein, B (2023). Creating tissue with intervertebral disc-like characteristics using gdf5 functionalized silk scaffolds and human mesenchymal stromal cells. European cells & materials eCM, 46, pp. 1-23. University of Wales 10.22203/eCM.v046a01

Crump, Katherine B.; Alminnawi, Ahmad; Bermudez-Lekerika, Paola; Compte, Roger; Gualdi, Francesco; McSweeney, Terence; Muñoz-Moya, Estefano; Nüesch, Andrea; Geris, Liesbet; Dudli, Stefan; Karppinen, Jaro; Noailly, Jérôme; Le Maitre, Christine; Gantenbein, Benjamin (2023). Cartilaginous endplates: A comprehensive review on a neglected structure in intervertebral disc research. JOR Spine, e1294. Wiley 10.1002/jsp2.1294

Illi, Joël Alain; Ilic, Marc; Stark, Anselm Walter; Amstutz, Cornelia; Burger, Juergen; Zysset, Philippe; Haeberlin, Andreas; Gräni, Christoph (2023). Mechanical testing and comparison of porcine tissue, silicones and 3D-printed materials for cardiovascular phantoms. Frontiers in Bioengineering and Biotechnology, 11 Frontiers Media 10.3389/fbioe.2023.1274673

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Bermudez, Paola; Croft, Andreas Shaun; Crump, Katherine Briana; Wuertz-Kosak, K.; Le Maitre, C. L.; Gantenbein, Benjamin (2022). Revisiting the catabolic response of intervertebral disc cells in 3D to TNF- and IL-1β (Unpublished). In: 6th International Spine Reseach Symposium ORS-PSRS. Skytop, Pennsylvania, USA. 6-10 November 2022.

Croft, Andreas Shaun; Corluka, Slavko; Silva-Correia, J.; Oliveira, J. M.; Crump, Katherine Briana; Reis, R. L.; Gantenbein, Benjamin (2022). Annulus fibrosus repair using methacrylated gellan gum in combination with novel silk in a dynamically loaded bovine organ culture model (Unpublished). In: 26th Annual meeting of the SSBRM. 9 June 2022.

Bermudez, P.; Croft, A. S.; Crump, K. B.; Wuertz-Kosak, K.; Le Maitre, C. L.; Gantenbein, B. (2022). In vitro induction of catabolic response to intervertebral disc cells in 3D culture. European cells & materials eCM. University of Wales

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Tarek, Basma; Bruggisser, Julia; Cattalani, Filippo; Posthaus, Horst (2021). Platelet Endothelial Cell Adhesion Molecule 1 (CD31) Is Essential for Clostridium perfringens Beta-Toxin Mediated Cytotoxicity in Human Endothelial and Monocytic Cells. Toxins, 13(12), p. 893. MDPI 10.3390/toxins13120893

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Mueller, Fabian; Hermann, Jan; Weber, Stefan; O'Toole Bom Braga, Gabriela; Topsakal, Vedat (2021). Image-Based Planning of Minimally Traumatic Inner Ear Access for Robotic Cochlear Implantation. Frontiers in Surgery, 8, p. 761217. Frontiers 10.3389/fsurg.2021.761217

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Ryser, Lorenz Timo; Arias-Roth, Emmanuelle; Perreten, Vincent; Irmler, Stefan; Bruggmann, Rémy (2021). Genetic and Phenotypic Diversity of Morganella morganii Isolated From Cheese. Frontiers in Microbiology, 12(738492), p. 738492. Frontiers 10.3389/fmicb.2021.738492

Jacinto, Joana G. P.; Häfliger, Irene M.; Akyürek, Eylem Emek; Sacchetto, Roberta; Benazzi, Cinzia; Gentile, Arcangelo; Drögemüller, Cord (2021). KCNG1-Related Syndromic Form of Congenital Neuromuscular Channelopathy in a Crossbred Calf. Genes, 12(11), p. 1792. MDPI, Molecular Diversity Preservation International 10.3390/genes12111792

Vogt, Anne-Cathrine S.; Roesti, Elisa S.; Mohsen, Mona O.; Leonchiks, Ainars; Vogel, Monique; Bachmann, Martin F. (2021). Anti-IAPP Monoclonal Antibody Improves Clinical Symptoms in a Mouse Model of Type 2 Diabetes. Vaccines, 9(11) MDPI 10.3390/vaccines9111316

Chang, Xinyue; Zeltins, Andris; Mohsen, Mona O.; Gharailoo, Zahra; Zha, Lisha; Liu, Xuelan; Walton, Senta; Vogel, Monique; Bachmann, Martin F. (2021). A Novel Double Mosaic Virus-like Particle-Based Vaccine against SARS-CoV-2 Incorporates Both Receptor Binding Motif (RBM) and Fusion Domain. Vaccines, 9(11) MDPI 10.3390/vaccines9111287

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Graf, Simone Sandra; Hong, Sangjin; Müller, Philipp; Gennis, Robert; von Ballmoos, Christoph (2021). Energy transfer between the nicotinamide nucleotide transhydrogenase and ATP synthase of Escherichia coli. Scientific reports, 11(1), p. 21234. Springer Nature 10.1038/s41598-021-00651-6

Kralik, Jakub; Kleinlogel, Sonja (2021). Functional Availability of ON-Bipolar Cells in the Degenerated Retina: Timing and Longevity of an Optogenetic Gene Therapy. International journal of molecular sciences, 22(21), p. 11515. MDPI 10.3390/ijms222111515

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