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Meier, R.; Lux, P.; McKinley, R.; Jung, S.; Fischer, U.; Gralla, J.; Wiest, R.; Kaesmacher, J. (2020). Threshold-based identification of persistent infarction after successful thrombectomy. International journal of stroke, 15(S1), p. 35. Sage
Moriconi, Stefano; Rodríguez-Núñez, Omar; Gros, Romane; Felger, Leonard A; Maragkou, Theoni; Hewer, Ekkehard; Pierangelo, Angelo; Novikova, Tatiana; Schucht, Philippe; McKinley, Richard (2024). Near-real-time Mueller polarimetric image processing for neurosurgical intervention. International journal of computer assisted radiology and surgery, 19(6), pp. 1033-1043. Springer 10.1007/s11548-024-03090-6
Gros, Romane; Rodríguez-Núñez, Omar; Felger, Leonard; Moriconi, Stefano; McKinley, Richard; Pierangelo, Angelo; Novikova, Tatiana; Vassella, Erik; Schucht, Philippe; Hewer, Ekkehard; Maragkou, Theoni (2024). Characterization of Polarimetric Properties in Various Brain Tumor Types Using Wide-Field Imaging Mueller Polarimetry. IEEE Transactions on Medical Imaging, p. 1. 10.1109/TMI.2024.3413288
Romascano, David; Rebsamen, Michael; Radojewski, Piotr; Blattner, Timo; McKinley, Richard; Wiest, Roland; Rummel, Christian (2024). Cortical thickness and grey-matter volume anomaly detection in individual MRI scans: Comparison of two methods. NeuroImage: Clinical, 43(103624), p. 103624. Elsevier 10.1016/j.nicl.2024.103624
Muri, Raphaela; Rummel, Christian; McKinley, Richard; Rebsamen, Michael; Maissen-Abgottspon, Stephanie; Kreis, Roland; Radojewski, Piotr; Pospieszny, Katarzyna; Hochuli, Michel; Wiest, Roland; Trepp, Roman; Everts, Regula (2024). Transient brain structure changes after high phenylalanine exposure in adults with phenylketonuria. (In Press). Brain : a journal of neurology Oxford University Press 10.1093/brain/awae139
Felger, Leonard; Rodríguez-Núñez, Omar; Gros, Romain; Maragkou, Theoni; McKinley, Richard; Moriconi, Stefano; Murek, Michael; Zubak, Irena; Novikova, Tatiana; Pierangelo, Angelo; Schucht, Philippe (2023). Robustness of the wide-field imaging Mueller polarimetry for brain tissue differentiation and white matter fiber tract identification in a surgery-like environment: an ex vivo study. Biomedical optics express, 14(5), pp. 2400-2415. Optical Society of America 10.1364/BOE.486438
Gros, Romain; Rodríguez-Núñez, Omar; Felger, Leonard; Moriconi, Stefano; McKinley, Richard; Pierangelo, Angelo; Novikova, Tatiana; Vassella, Erik; Schucht, Philippe; Hewer, Ekkehard; Maragkou, Theoni (2023). Effects of formalin fixation on polarimetric properties of brain tissue: fresh or fixed? Neurophotonics, 10(2), 025009. SPIE 10.1117/1.NPh.10.2.025009
Rebsamen, Michael; McKinley, Richard; Radojewski, Piotr; Pistor, Maximilian; Friedli, Christoph; Hoepner, Robert; Salmen, Anke; Chan, Andrew; Reyes, Mauricio; Wagner, Franca; Wiest, Roland; Rummel, Christian (2023). Reliable brain morphometry from contrast-enhanced T1w-MRI in patients with multiple sclerosis. Human brain mapping, 44(3), pp. 970-979. Wiley-Blackwell 10.1002/hbm.26117
Pati, Sarthak; Baid, Ujjwal; Edwards, Brandon; Sheller, Micah; Wang, Shih-Han; Reina, G Anthony; Foley, Patrick; Gruzdev, Alexey; Karkada, Deepthi; Davatzikos, Christos; Sako, Chiharu; Ghodasara, Satyam; Bilello, Michel; Mohan, Suyash; Vollmuth, Philipp; Brugnara, Gianluca; Preetha, Chandrakanth J; Sahm, Felix; Maier-Hein, Klaus; Zenk, Maximilian; ... (2023). Author Correction: Federated learning enables big data for rare cancer boundary detection. Nature communications, 14(1), p. 436. Nature Publishing Group 10.1038/s41467-023-36188-7
Pati, Sarthak; Baid, Ujjwal; Edwards, Brandon; Sheller, Micah; Wang, Shih-Han; Reina, G Anthony; Foley, Patrick; Gruzdev, Alexey; Karkada, Deepthi; Davatzikos, Christos; Sako, Chiharu; Ghodasara, Satyam; Bilello, Michel; Mohan, Suyash; Vollmuth, Philipp; Brugnara, Gianluca; Preetha, Chandrakanth J; Sahm, Felix; Maier-Hein, Klaus; Zenk, Maximilian; ... (2022). Federated learning enables big data for rare cancer boundary detection. Nature communications, 13(1), p. 7346. Nature Publishing Group 10.1038/s41467-022-33407-5
Mehta, Raghav; Filos, Angelos; Baid, Ujjwal; Sako, Chiharu; McKinley, Richard; Rebsamen, Michael; Dätwyler, Katrin; Meier, Raphael; Radojewski, Piotr; Murugesan, Gowtham Krishnan; Nalawade, Sahil; Ganesh, Chandan; Wagner, Ben; Yu, Fang F; Fei, Baowei; Madhuranthakam, Ananth J; Maldjian, Joseph A; Daza, Laura; Gómez, Catalina; Arbeláez, Pablo; ... (2022). QU-BraTS: MICCAI BraTS 2020 Challenge on Quantifying Uncertainty in Brain Tumor Segmentation - Analysis of Ranking Scores and Benchmarking Results. The journal of machine learning for biomedical imaging, 2022 MELBA
McKinley, Richard; Felger, Leonard A.; Hewer, Ekkehard; Maragkou, Theoni; Murek, Michael; Novikova, Tatiana; Rodríguez-Núñez, Omar; Pierangelo, Angelo; Schucht, Philippe (20 May 2022). Machine learning for white matter fibre tract visualization in the human brain via Mueller matrix polarimetric data. In: Unconventional Optical Imaging III 12136 (p. 35). SPIE 10.1117/12.2624465
Rebsamen, Michael; Radojewski, Piotr; McKinley, Richard; Reyes, Mauricio; Wiest, Roland; Rummel, Christian (2022). A Quantitative Imaging Biomarker Supporting Radiological Assessment of Hippocampal Sclerosis Derived From Deep Learning-Based Segmentation of T1w-MRI. Frontiers in neurology, 13, p. 812432. Frontiers Media S.A. 10.3389/fneur.2022.812432
McKinley, Richard; Wepfer, Rik; Aschwanden, Fabian; Grunder, Lorenz; Muri, Raphaela; Rummel, Christian; Verma, Rajeev; Weisstanner, Christian; Reyes, Mauricio; Salmen, Anke; Chan, Andrew; Wagner, Franca; Wiest, Roland (2021). Simultaneous lesion and brain segmentation in multiple sclerosis using deep neural networks. Scientific reports, 11(1), p. 1087. Springer Nature 10.1038/s41598-020-79925-4
McKinley, Richard I; Rebsamen, Michael; Dätwyler, Katrin; Meier, Raphael; Radojewski, Piotr; Wiest, Roland (2021). Uncertainty-Driven Refinement of Tumor-Core Segmentation Using 3D-to-2D Networks with Label Uncertainty. Lecture notes in computer science, 12658, pp. 401-411. Springer 10.1007/978-3-030-72084-1_36
Rebsamen, Michael; Rummel, Christian; Reyes, Mauricio; Wiest, Roland; McKinley, Richard (2020). Direct cortical thickness estimation using deep learning-based anatomy segmentation and cortex parcellation. Human brain mapping, 41(17), pp. 4804-4814. Wiley-Blackwell 10.1002/hbm.25159
McKinley, Richard; Wepfer, Rik; Grunder, Lorenz; Aschwanden, Fabian; Fischer, Tim; Friedli, Christoph; Muri, Raphaela; Rummel, Christian; Verma, Rajeev Kumar; Weisstanner, Christian; Wiestler, Benedikt; Berger, Christoph; Eichinger, Paul; Muehlau, Mark; Reyes, Mauricio; Salmen, Anke; Chan, Andrew; Wiest, Roland; Wagner, Franca (2020). Automatic detection of lesion load change in Multiple Sclerosis using convolutional neural networks with segmentation confidence. NeuroImage: Clinical, 25, p. 102104. Elsevier 10.1016/j.nicl.2019.102104
McKinley, Richard; Wepfer, Rik; Aschwanden, Fabian; Grunder, Lorenz; Muri, Raphaela; Rummel, Christian; Verma, Rajeev; Weisstanner, Christian; Reyes, Mauricio; Salmen, Anke; Chan, Andrew; Wagner, Franca; Wiest, Roland (2020). Robustness of Simultaneous Lesion and Neuroanatomy Segmentation in Multiple Sclerosis Using Deep Neural Networks (In Press). SSRN Electronic Journal Elsevier 10.2139/ssrn.3529469
McKinley, Richard; Grunder, Lorenz; Wepfer, Rik; Aschwanden, Fabian; Fischer, Tim; Friedli, Christoph; Muri, Raphaela; Rummel, Christian; Verma, Rajeev; Weisstanner, Christian; Reyes, Mauricio; Salmen, Anke; Chan, Andrew; Wiest, Roland; Wagner, Franca (2019). Automatic detection of lesion load change in Multiple Sclerosis using convolutional neural networks with segmentation confidence (arXiv). Cornell University
Meier, Raphael; Lux, Paula; Jung, Simon; Fischer, Urs; Gralla, Jan; Reyes, Mauricio; Wiest, Roland; McKinley, Richard; Kaesmacher, Johannes (2019). Neural network-derived perfusion Maps for the assessment of lesions in patients with acute ischemic stroke (Submitted). Radiology: artificial intelligence Radiological Society of North America 10.1148/ryai.2019190019
Jungo, Alain; McKinley, Richard; Meier, Raphael; Knecht, Urspeter; Vera, Luis; Pérez-Beteta, Julián; Molina-García, David; Pérez-García, Víctor M.; Wiest, Roland; Reyes, Mauricio (2018). Towards uncertainty-assisted brain tumor segmentation and survival prediction. In: International Conference On Medical Image Computing & Computer Assisted Intervention. 10.1007/978-3-319-75238-9_40
