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Spari, Daniel; Schmid, Annina; Sanchez-Taltavull, Daniel; Murugan, Shaira; Keller, Keely; Ennaciri, Nadia; Salm, Lilian; Stroka, Deborah; Beldi, Guido (2024). Released bacterial ATP shapes local and systemic inflammation during abdominal sepsis. eLife, 13 eLife Sciences Publications 10.7554/eLife.96678
Peisl, Sarah; Guillen Ramirez, Hugo; Sánchez-Taltavull, Daniel; Widmer, Andreas; Sommerstein, Rami; Beldi, Guido Jakob Friedrich (2024). Influence of patient characteristics on microbial composition in surgical-site infections: insights from national surveillance study. British journal of surgery, 111(6) Oxford University Press 10.1093/bjs/znae138
Hamley, Jonathan I D; Beldi, Guido; Sánchez-Taltavull, Daniel (2024). Infectious Disease in the Workplace: Quantifying Uncertainty in Transmission. Bulletin of mathematical biology, 86(3) Springer 10.1007/s11538-023-01249-x
Jakob, Manuel O; Spari, Daniel; Sánchez Taltavull, Daniel; Salm, Lilian; Yilmaz, Bahtiyar; Doucet Ladevèze, Rémi; Mooser, Catherine; Pereyra, David; Ouyang, Ye; Schmidt, Theresa; Mattiola, Irene; Starlinger, Patrick; Stroka, Deborah; Tschan, Franziska; Candinas, Daniel; Gasteiger, Georg; Klose, Christoph S N; Diefenbach, Andreas; Gomez de Agüero, Mercedes and Beldi, Guido (2023). ILC3s restrict the dissemination of intestinal bacteria to safeguard liver regeneration after surgery. Cell reports, 42(3), p. 112269. Cell Press 10.1016/j.celrep.2023.112269
Yarahmadov, Tural; Wang, Junhua; Sanches-Taltavull, Daniel; Rojas, Cristian A Alvarez; Brodie, Tess; Büchi, Isabel; Keogh, Adrian; Gottstein, Bruno; Stroka, Deborah; Beldi, Guido (2022). Primary Infection by E. multilocularis Induces Distinct Patterns of Cross Talk between Hepatic Natural Killer T Cells and Regulatory T Cells in Mice. Infection and immunity, 90(8), e0017422. American Society for Microbiology 10.1128/iai.00174-22
Dommann, Noëlle; Gavini, Jacopo; Sánchez-Taltavull, Daniel; Baier, Felix Alexander; Birrer, Fabienne; Loforese, Giulio; Candinas, Daniel; Stroka, Deborah (2022). LIM protein Ajuba promotes liver cell proliferation through its involvement in DNA replication and DNA damage control. FEBS letters, 596(14), pp. 1746-1764. FEBS Press 10.1002/1873-3468.14371
Melin, Nicolas; Yarahmadov, Tural; Sanchez-Taltavull, Daniel; Birrer, Fabienne E; Brodie, Tess M; Petit, Benoît; Felser, Andrea; Nuoffer, Jean-Marc; Montani, Matteo; Vozenin, Marie-Catherine; Herrmann, Evelyn; Candinas, Daniel; Aebersold, Daniel M; Stroka, Deborah (2022). A new mouse model of radiation-induced liver disease reveals mitochondrial dysfunction as an underlying fibrotic stimulus. JHEP reports, 4(7), p. 100508. Elsevier 10.1016/j.jhepr.2022.100508
Zindel, Joel; Mittner, Jonas; Bayer, Julia; April-Monn, Simon L.; Kohler, Andreas; Nusse, Ysbrand; Dosch, Michel; Büchi, Isabel; Sanchez-Taltavull, Daniel; Dawson, Heather; Gomez de Agüero, Mercedes; Asahina, Kinji; Kubes, Paul; Macpherson, Andrew J.; Stroka, Deborah; Candinas, Daniel (2021). Intraperitoneal microbial contamination drives post-surgical peritoneal adhesions by mesothelial EGFR-signaling. Nature Communications, 12(1), p. 7316. Springer Nature 10.1038/s41467-021-27612-x
Sánchez-Taltavull, Daniel; Castelo-Székely, Violeta; Murugan, Shaira; Hamley, Jonathan I. D.; Rollenske, Tim; Ganal-Vonarburg, Stephanie C.; Büchi, Isabel; Keogh, Adrian; Li, Hai; Salm, Lilian; Spari, Daniel; Yilmaz, Bahtiyar; Zimmermann, Jakob; Gerfin, Michael; Roldan, Edgar; Beldi, Guido (2021). Regular testing of asymptomatic healthcare workers identifies cost-efficient SARS-CoV-2 preventive measures. PLoS ONE, 16(11), e0258700. Public Library of Science 10.1371/journal.pone.0258700
Wang, Zhong-Yi; Keogh, Adrian; Waldt, Annick; Cuttat, Rachel; Neri, Marilisa; Zhu, Shanshan; Schuierer, Sven; Ruchti, Alexandra; Crochemore, Christophe; Knehr, Judith; Bastien, Julie; Ksiazek, Iwona; Sánchez-Taltavull, Daniel; Ge, Hui; Wu, Jing; Roma, Guglielmo; Helliwell, Stephen B; Stroka, Deborah; Nigsch, Florian (2021). Single-cell and bulk transcriptomics of the liver reveals potential targets of NASH with fibrosis. Scientific reports, 11(1), p. 19396. Springer Nature 10.1038/s41598-021-98806-y
Sánchez-Taltavull, Daniel; Castelo-Székely, Violeta; Candinas, Daniel; Roldán, Edgar; Beldi, Guido (2021). Modelling strategies to organize healthcare workforce during pandemics: Application to COVID-19. Journal of theoretical biology, 523(110718), p. 110718. Elsevier 10.1016/j.jtbi.2021.110718
Baier, Felix Alexander; Sánchez-Taltavull, Daniel; Yarahmadov, Tural; Castellà, Cristina Gómez; Jebbawi, Fadi; Keogh, Adrian; Tombolini, Riccardo; Odriozola, Adolfo; Castro Dias, Mariana; Deutsch, Urban; Furuse, Mikio; Engelhardt, Britta; Zuber, Benoît; Odermatt, Alex; Candinas, Daniel; Keogh-Stroka, Deborah M. (2021). Loss of claudin-3 impairs hepatic metabolism, biliary barrier function and cell proliferation in the murine liver. Cellular and molecular gastroenterology and hepatology, 12(2), pp. 745-767. Elsevier 10.1016/j.jcmgh.2021.04.003
Melin, Nicolas; Sánchez-Taltavull, Daniel; Fahrner, René; Keogh, Adrian; Dosch, Michel; Büchi, Isabel; Zimmer, Yitzhak; Medová, Michaela; Beldi, Guido; Aebersold, Daniel M.; Candinas, Daniel; Stroka, Deborah (2021). Synergistic effect of the TLR5 agonist CBLB502 and its downstream effector IL-22 against liver injury. Cell death & disease, 12(4), p. 366. Nature Publishing Group 10.1038/s41419-021-03654-3
Gillespie, Mark A.; Palii, Carmen G.; Sanchez-Taltavull, Daniel; Perkins, Theodore J.; Brand, Marjorie; Ranish, Jeffrey A. (2020). Absolute quantification of transcription factors in human erythropoiesis using selected reaction monitoring mass spectrometry. STAR protocols, 1(3), p. 100216. Elsevier 10.1016/j.xpro.2020.100216
Dommann, Noëlle; Sánchez Taltavull, Daniel; Eggs, Linda; Birrer, Fabienne Esther; Brodie, Tess; Salm, Lilian; Baier, Felix Alexander; Medova, Michaela; Humbert, Magali; Tschan, Mario; Beldi, Guido; Candinas, Daniel; Stroka, Deborah (2020). The LIM Protein Ajuba Augments Tumor Metastasis in Colon Cancer. Cancers, 12(7) MDPI AG 10.3390/cancers12071913
Gillespie, Mark A; Palii, Carmen G; Sanchez-Taltavull, Daniel; Shannon, Paul; Longabaugh, William J R; Downes, Damien J; Sivaraman, Karthi; Espinoza, Herbert M; Hughes, Jim R; Price, Nathan D; Perkins, Theodore J; Ranish, Jeffrey A; Brand, Marjorie (2020). Absolute Quantification of Transcription Factors Reveals Principles of Gene Regulation in Erythropoiesis. Molecular cell, 78(5), 960-974.e11. Cell Press 10.1016/j.molcel.2020.03.031
Sánchez-Taltavull, Daniel; Perkins, Theodore J; Dommann, Noelle; Melin, Nicolas; Keogh, Adrian; Candinas, Daniel; Stroka, Deborah; Beldi, Guido (2020). Bayesian correlation is a robust gene similarity measure for single-cell RNA-seq data. NAR genomics and bioinformatics, 2(1) Oxford University Press 10.1093/nargab/lqaa002
Dosch, Michel; Zindel, Joël; Jebbawi, Fadi; Melin, Nicolas; Sanchez-Taltavull, Daniel; Stroka, Deborah; Candinas, Daniel; Beldi, Guido (2019). Connexin-43-dependent ATP release mediates macrophage activation during sepsis. eLife, 8 10.7554/eLife.42670
Melin, Nicolas; Sánchez Taltavull, Daniel; Petit, B.; Herman, E.; Zimmer, Yitzhak; Candinas, Daniel; Vozenin, M.C.; Aebersold, Daniel; Keogh-Stroka, Deborah M. (2018). SP-0330: Science slam: Report back from ESTRO mobility grants biology: Development of a radiation induced liver damage model. Radiotherapy and oncology, 127(Suppl. 1), S175-S176. Elsevier 10.1016/S0167-8140(18)30640-6
Jakob, Manuel O.; Sánchez-Taltavull, Daniel; Yilmaz, Bahtiyar; Malinka, Thomas; Mooser, Catherine; Spari, Daniel; Salm, Lilian A.; Freiburghaus, Katrin; Pereyra, David; Hapfelmeier, Siegfried; Masoodi, Mojgan; Starlinger, Patrick; Stroka, Deborah; Tschan, Franziska; Candinas, Daniel; Gomez de Agüero, Mercedes; Beldi, Guido (19 September 2019). Compartmentalization of intestinal bacteria by hepatic ILC3s prevents infections after surgery (bioRxiv). Cold Spring Harbor Laboratory 10.1101/773150
