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Sypka, Michalina; Zwicker, Marianne; Braga Lagache, Sophie; Uldry, Anne-Christine; Vogel, Monique; Engeroff, Paul (2024). Mouse IgE clone SPE-7 can contain functional mouse IgG. Allergy, 79(9), pp. 2544-2547. Wiley 10.1111/all.16141
Lauer, David; Magnin, Cheryl Y; Kolly, Luca R; Wang, Huijuan; Brunner, Matthias; Chabria, Mamta; Cereghetti, Grazia M.; Gabryś, Hubert S; Tanadini-Lang, Stephanie; Uldry, Anne-Christine; Heller, Manfred; Verleden, Stijn E; Klein, Kerstin; Sarbu, Adela-Cristina; Funke-Chambour, Manuela; Ebner, Lukas; Distler, Oliver; Maurer, Britta; Gote-Schniering, Janine (2024). Radioproteomics stratifies molecular response to antifibrotic treatment in pulmonary fibrosis. JCI insight, 9(15) JCI Insight 10.1172/jci.insight.181757
Müller, Joachim; Boubaker, Ghalia; Müller, Norbert; Uldry, Anne-Christine; Braga-Lagache, Sophie; Heller, Manfred; Hemphill, Andrew (2024). Investigating Antiprotozoal Chemotherapies with Novel Proteomic Tools-Chances and Limitations: A Critical Review. International journal of molecular sciences, 25(13) MDPI 10.3390/ijms25136903
Spörri, Livia; Uldry, Anne-Christine; Kreuzer, Marco; Herzog, Elio L; Zinkernagel, Martin S; Unterlauft, Jan D; Zysset, Denise C (2024). Exploring the Ocular Surface Microbiome and Tear Proteome in Glaucoma. International journal of molecular sciences, 25(11) MDPI 10.3390/ijms25116257
Ajiboye, Jubilee; Uldry, Anne-Christine; Heller, Manfred; Naguleswaran, Arunasalam; Fan, Erkang; Van Voorhis, Wesley C; Hemphill, Andrew; Müller, Joachim (2024). Molecular Targets of the 5-Amido-Carboxamide Bumped Kinase Inhibitor BKI-1748 in Cryptosporidium parvum and HCT-8 Host Cells. International journal of molecular sciences, 25(5) MDPI 10.3390/ijms25052707
Gurzeler, Lukas-Adrian; Link, Marion; Ibig, Yvonne; Schmidt, Isabel; Galuba, Olaf; Schoenbett, Julian; Gasser-Didierlaurant, Christelle; Parker, Christian N; Mao, Xiaohong; Bitsch, Francis; Schirle, Markus; Couttet, Philipp; Sigoillot, Frederic; Ziegelmüller, Jana; Uldry, Anne-Christine; Teodorowicz, Wojciech; Schmiedeberg, Niko; Mühlemann, Oliver; Reinhardt, Jürgen (2023). Drug-induced eRF1 degradation promotes readthrough and reveals a new branch of ribosome quality control. Cell reports, 42(9), p. 113056. Cell Press 10.1016/j.celrep.2023.113056
Nasif, Sofia; Colombo, Martino; Uldry, Anne-Christine; Schröder, Markus S; De Brot, Simone; Mühlemann, Oliver (2023). Inhibition of nonsense-mediated mRNA decay reduces the tumorigenicity of human fibrosarcoma cells. NAR cancer, 5(3), zcad048. Oxford University Press 10.1093/narcan/zcad048
Pilotto, Federica; Douthwaite, Christopher; Diab, Rim; Ye, XiaoQian; Al Qassab, Zahraa; Tietje, Christoph; Mounassir, Meriem; Odriozola, Adolfo; Thapa, Aishwarya; Buijsen, Ronald A M; Lagache, Sophie; Uldry, Anne-Christine; Heller, Manfred; Müller, Stefan; van Roon-Mom, Willeke M C; Zuber, Benoît; Liebscher, Sabine; Saxena, Smita (2023). Early molecular layer interneuron hyperactivity triggers Purkinje neuron degeneration in SCA1. Neuron, 111(16), 2523-2543.e10. Elsevier 10.1016/j.neuron.2023.05.016
Hänggeli, Kai Pascal Alexander; Hemphill, Andrew; Müller, Norbert; Heller, Manfred; Uldry, Anne-Christine; Braga-Lagache, Sophie; Müller, Joachim; Boubaker, Ghalia (2023). Comparative Proteomic Analysis of Toxoplasma gondii RH Wild-Type and Four SRS29B (SAG1) Knock-Out Clones Reveals Significant Differences between Individual Strains. International journal of molecular sciences, 24(13) MDPI 10.3390/ijms241310454
Müller, Joachim; Schlange, Carling; Heller, Manfred; Uldry, Anne-Christine; Braga-Lagache, Sophie; Haynes, Richard K; Hemphill, Andrew (2023). Proteomic characterization of Toxoplasma gondii ME49 derived strains resistant to the artemisinin derivatives artemiside and artemisone implies potential mode of action independent of ROS formation. International journal for parasitology. Drugs and drug resistance, 21, pp. 1-12. Elsevier 10.1016/j.ijpddr.2022.11.005
Memedovski, Roman; Preza, Matías; Müller, Joachim; Kämpfer, Tobias Emmanuel; Rufener, Reto; de Souza, Marcus Vinicius Nora; da Silva, Emerson Teixeira; de Andrade, Gabriel Fernandes; Braga, Sophie; Uldry, Anne-Christine; Buchs, Natasha; Heller, Manfred; Lundström-Stadelmann, Britta (2023). Investigation of the mechanism of action of mefloquine and derivatives against the parasite Echinococcus multilocularis. International journal for parasitology. Drugs and drug resistance, 21, pp. 114-124. Elsevier 10.1016/j.ijpddr.2023.03.002
Timpanaro, Andrea; Piccand, Caroline; Uldry, Anne-Christine; Bode, Peter Karl; Dzhumashev, Dzhangar; Sala, Rita; Heller, Manfred; Rössler, Jochen; Bernasconi, Michele (2023). Surfaceome Profiling of Cell Lines and Patient-Derived Xenografts Confirm FGFR4, NCAM1, CD276, and Highlight AGRL2, JAM3, and L1CAM as Surface Targets for Rhabdomyosarcoma. International journal of molecular sciences, 24(3), p. 2601. MDPI 10.3390/ijms2403260
Timpanaro, Andrea; Piccand, Caroline; Uldry, Anne-Christine; Bode, Peter Karl; Dzhumashev, Dzhangar; Sala, Rita; Heller, Manfred; Rössler, Jochen Karl; Bernasconi, Michele (2023). Surfaceome Profiling of Cell Lines and Patient-Derived Xenografts Confirm FGFR4, NCAM1, CD276, and Highlight AGRL2, JAM3, and L1CAM as Surface Targets for Rhabdomyosarcoma. International journal of molecular sciences, 24(3) MDPI 10.3390/ijms24032601
Müller, Joachim; Preza, Matías; Kaethner, Marc; Rufener, Reto; Braga, Sophie; Uldry, Anne-Christine; Heller, Manfred; Lundström-Stadelmann, Britta (2023). Targeted and non-targeted proteomics to characterize the parasite proteins of Echinococcus multilocularis metacestodes. Frontiers in cellular and infection microbiology, 13, p. 1170763. Frontiers 10.3389/fcimb.2023.1170763
Müller, Joachim; Boubaker, Ghalia; Imhof, Dennis; Hänggeli, Kai; Haudenschild, Noé; Uldry, Anne-Christine; Braga-Lagache, Sophie; Heller, Manfred; Ortega-Mora, Luis-Miguel; Hemphill, Andrew (2022). Differential Affinity Chromatography Coupled to Mass Spectrometry: A Suitable Tool to Identify Common Binding Proteins of a Broad-Range Antimicrobial Peptide Derived from Leucinostatin. Biomedicines, 10(11) MDPI 10.3390/biomedicines10112675
Domanski, Michal; Dedic, Emil; Pérez, Maria Escura; Cléry, Antoine; Campagne, Sébastien; Uldry, Anne-Christine; Braga, Sophie; Heller, Manfred; Rabl, Julius; Afanasyev, Pavel; Boehringer, Daniel; Nováček, Jiří; Allain, Frédéric T; Mühlemann, Oliver (2022). 40S hnRNP particles are a novel class of nuclear biomolecular condensates. Nucleic acids research, 50(11), pp. 6300-6312. Oxford University Press 10.1093/nar/gkac457
Schniering, Janine; Maciukiewicz, Malgorzata; Gabrys, Hubert S; Brunner, Matthias; Blüthgen, Christian; Meier, Chantal; Braga-Lagache, Sophie; Uldry, Anne-Christine; Heller, Manfred; Guckenberger, Matthias; Fretheim, Håvard; Nakas, Christos T.; Hoffmann-Vold, Anna-Maria; Distler, Oliver; Frauenfelder, Thomas; Tanadini-Lang, Stephanie; Maurer, Britta (2022). Computed tomography-based radiomics decodes prognostic and molecular differences in interstitial lung disease related to systemic sclerosis. European respiratory journal, 59(5) European Respiratory Society 10.1183/13993003.04503-2020
Uldry, Anne-Christine; Maciel-Dominguez, Anabel; Jornod, Maïwenn; Buchs, Natasha; Braga-Lagache, Sophie; Brodard, Justine; Jankovic, Jovana; Bonadies, Nicolas; Heller, Manfred (2022). Effect of Sample Transportation on the Proteome of Human Circulating Blood Extracellular Vesicles. International journal of molecular sciences, 23(9), p. 4515. MDPI 10.3390/ijms23094515
Müller, Joachim; Anghel, Nicoleta; Imhof, Dennis; Hänggeli, Kai; Uldry, Anne-Christine; Braga-Lagache, Sophie; Heller, Manfred; Ojo, Kayode K; Ortega-Mora, Luis-Miguel; Van Voorhis, Wesley C; Hemphill, Andrew (2022). Common Molecular Targets of a Quinolone Based Bumped Kinase Inhibitor in Neospora caninum and Danio rerio. International journal of molecular sciences, 23(4) MDPI 10.3390/ijms23042381
Hallal, Mahmoud; Braga-Lagache, Sophie; Jankovic, Jovana; Simillion, Cedric; Bruggmann, Rémy; Uldry, Anne-Christine; Allam, Ramanjaneyulu; Heller, Manfred; Bonadies, Nicolas (2021). Inference of kinase-signaling networks in human myeloid cell line models by Phosphoproteomics using kinase activity enrichment analysis (KAEA). BMC cancer, 21(1), p. 789. BioMed Central 10.1186/s12885-021-08479-z
Contu, Lara; Balistreri, Giuseppe; Domanski, Michal; Uldry, Anne-Christine; Mühlemann, Oliver (2021). Characterisation of the Semliki Forest Virus-host cell interactome reveals the viral capsid protein as an inhibitor of nonsense-mediated mRNA decay. PLoS pathogens, 17(5), e1009603. Public Library of Science 10.1371/journal.ppat.1009603
Müller, Joachim; Heller, Manfred; Uldry, Anne-Christine; Braga, Sophie; Müller, Norbert (2021). Nitroreductase Activites in Giardia lamblia: ORF 17150 Encodes a Quinone Reductase with Nitroreductase Activity. Pathogens, 10(2), p. 129. MDPI AG 10.3390/pathogens10020129
Cyrta, Joanna; Augspach, Anke; De Filippo, Maria Rosaria; Prandi, Davide; Thienger, Phillip; Benelli, Matteo; Cooley, Victoria; Bareja, Rohan; Wilkes, David; Chae, Sung-Suk; Cavaliere, Paola; Dephoure, Noah; Uldry, Anne-Christine; Braga Lagache, Sophie; Roma, Luca; Cohen, Sandra; Jaquet, Muriel; Brandt, Laura P.; Alshalalfa, Mohammed; Puca, Loredana; ... (2020). Role of specialized composition of SWI/SNF complexes in prostate cancer lineage plasticity. Nature Communications, 11(1), p. 5549. Springer Nature 10.1038/s41467-020-19328-1
Müller, Joachim; Braga, Sophie; Uldry, Anne-Christine; Heller, Manfred; Müller, Norbert (2020). Comparative proteomics of three Giardia lamblia strains: investigation of antigenic variation in the post-genomic era. Parasitology, 147(9), pp. 1008-1018. Cambridge University Press 10.1017/S0031182020000657
Winzer, Pablo; Müller, Joachim; Imhof, Dennis; Ritler, Dominic; Uldry, Anne-Christine; Braga-Lagache, Sophie; Heller, Manfred; Ojo, Kayode K; Van Voorhis, Wesley C; Ortega-Mora, Luis-Miguel; Hemphill, Andrew (2020). Neospora caninum: Differential Proteome of Multinucleated Complexes Induced by the Bumped Kinase Inhibitor BKI-1294. Microorganisms, 8(6) MDPI 10.3390/microorganisms8060801
Buchs, Natasha; Braga, Sophie Marie-Pierre; Uldry, Anne-Christine; Brodard, Justine; Debonneville, Christophe; Reynard, Jean-Sébastien; Heller, Manfred (2018). Absolute Quantification of in Grapevine Leaf and Petiole Tissues by Proteomics. Frontiers in Plant Science, 9, p. 1735. Frontiers 10.3389/fpls.2018.01735
