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Pavlos, Rebecca; Deshpande, Pooja; Chopra, Abha; Leary, Shay; Strautins, Kaija; Nolan, David; Thorborn, Daren; Shaefer, Mark; Rauch, Andri; Dunn, David; Montaner, Julio; Rachlis, Anita; Almeida, Coral-Ann; Choo, Linda; James, Ian; Redwood, Alec J; Li, Yueran; Gaudieri, Silvana; Mallal, Simon A and Phillips, Elizabeth J (2020). New genetic predictors for abacavir tolerance in HLA-B*57:01 positive individuals. Human immunology, 81(6), pp. 300-304. Elsevier 10.1016/j.humimm.2020.02.011
Lucas, Michaela; Deshpande, Pooja; James, Ian; Rauch, Andri; Pfafferott, Katja; Gaylard, Elouise; Merani, Shahzma; Plauzolles, Anne; Lucas, Andrew; McDonnell, Wyatt; Kalams, Spyros; Pilkinton, Mark; Chastain, Cody; Barnett, Louise; Prosser, Amy; Mallal, Simon; Fitzmaurice, Karen; Drummer, Heidi; Ansari, M. Azim; Pedergnana, Vincent; ... (2018). Evidence of CD4+ T cell-mediated immune pressure on the Hepatitis C virus genome. Scientific Reports, 8(1), p. 7224. Nature Publishing Group 10.1038/s41598-018-25559-6
Nitschke, Katja; Barriga, Alejandro; Schmidt, Julia; Timm, Jörg; Viazov, Sergei; Kuntzen, Thomas; Kim, Arthur Y.; Lauer, Georg M.; Allen, Todd M.; Gaudieri, Silvana; Rauch, Andri; Lange, Christian M.; Sarrazin, Christoph; Eiermann, Thomas; Sidney, John; Sette, Alessandro; Thimme, Robert; López, Daniel; Neumann-Haefelin, Christoph (2014). HLA-B⁎27 subtype specificity determines targeting and viral evolution of a hepatitis C virus-specific CD8+ T cell epitope. Journal of hepatology, 60(1), pp. 22-29. Elsevier 10.1016/j.jhep.2013.08.009
Gaudieri, Silvana; Lucas, Michaela; Lucas, Andrew; McKinnon, Elizabeth; Albloushi, Hiba; Rauch, Andri; di Iulio, Julia; Martino, David; Prescott, Susan L; Tulic, Meri K (2012). Genetic variations in IL28B and allergic disease in children. PLoS ONE, 7(1), e30607. Lawrence, Kans.: Public Library of Science 10.1371/journal.pone.0030607
Pfafferott, Katja; Gaudieri, Silvana; Ulsenheimer, Axel; James, Ian; Heeg, Malte; Nolan, David; John, Mina; Rauch, Andri; Mallal, Simon; Lucas, Andrew; Klenerman, Paul; Diepolder, Helmut M; Lucas, Michaela (2011). Constrained pattern of viral evolution in acute and early HCV infection limits viral plasticity. PLoS ONE, 6(2), e16797. Lawrence, Kans.: Public Library of Science 10.1371/journal.pone.0016797
Merani, Shahzma; Petrovic, Danijela; James, Ian; Chopra, Abha; Cooper, Don; Freitas, Elizabeth; Rauch, Andri; di Iulio, Julia; John, Mina; Lucas, Michaela; Fitzmaurice, Karen; McKiernan, Susan; Norris, Suzanne; Kelleher, Dermot; Klenerman, Paul; Gaudieri, Silvana (2011). Effect of immune pressure on hepatitis C virus evolution: insights from a single-source outbreak. Hepatology, 53(2), pp. 396-405. Hoboken, N.J.: Wiley Interscience 10.1002/hep.24076
Rohrbach, Janine; Robinson, Nicola; Harcourt, Gillian; Hammond, Emma; Gaudieri, Silvana; Gorgievski, Meri; Telenti, Amalio; Keiser, Olivia; Günthard, Huldrych F; Hirschel, Bernhard; Hoffmann, Matthias; Bernasconi, Enos; Battegay, Manuel; Furrer, Hansjakob; Klenerman, Paul; Rauch, Andri (2010). Cellular immune responses to HCV core increase and HCV RNA levels decrease during successful antiretroviral therapy. Gut, 59(9), pp. 1252-1258. London: BMJ Publishing Group 10.1136/gut.2009.205971
Rauch, Andri; James, Ian; Pfafferott, Katja; Nolan, David; Klenerman, Paul; Cheng, Wendy; Mollison, Lindsay; McCaughan, Geoff; Shackel, Nick; Jeffrey, Gary P; Baker, Ross; Freitas, Elizabeth; Humphreys, Isla; Furrer, Hansjakob; Günthard, Huldrych F; Hirschel, Bernard; Mallal, Simon; John, Mina; Lucas, Michaela; Barnes, Eleanor; ... (2009). Divergent adaptation of hepatitis C virus genotypes 1 and 3 to human leukocyte antigen-restricted immune pressure. Hepatology, 50(4), pp. 1017-29. Hoboken, N.J.: Wiley Interscience 10.1002/hep.23101
Gaudieri, Silvana; Rauch, Andri; Pfafferott, Katja; Barnes, Eleanor; Cheng, Wendy; McCaughan, Geoff; Shackel, Nick; Jeffrey, Gary P; Mollison, Lindsay; Baker, Ross; Furrer, Hansjakob; Günthard, Huldrych F; Freitas, Elizabeth; Humphreys, Isla; Klenerman, Paul; Mallal, Simon; James, Ian; Roberts, Stuart; Nolan, David and Lucas, Michaela (2009). Hepatitis C virus drug resistance and immune-driven adaptations: relevance to new antiviral therapy. Hepatology, 49(4), pp. 1069-82. Hoboken, N.J.: Wiley Interscience 10.1002/hep.22773
Rauch, Andri; Gaudieri, Silvana; Thio, Chloe; Bochud, Pierre-Yves (2009). Host genetic determinants of spontaneous hepatitis C clearance. Pharmacogenomics, 10(11), pp. 1819-37. London: Future Medicine 10.2217/PGS.09.121
Rauch, Andri; Gaudieri, Silvana; Evison, John; Nolan, David; Cavassini, Matthias; Weber, Rainer; James, Ian; Furrer, Hansjakob (2008). Low current and nadir CD4+ T-cell counts are associated with higher hepatitis C virus RNA levels in the Swiss HIV cohort study. Antiviral therapy, 13(3), pp. 455-60. London: International Medical Press
Rauch, Andri; Nolan, David; Furrer, Hansjakob; McKinnon, Elizabeth; John, Mina; Mallal, Simon; Gaudieri, Silvana; Günthard, Huldrych F; Schmid, Patrick; Battegay, Manuel; Hirschel, Bernard; Telenti, Amalio; James, Ian (2008). HLA-Bw4 homozygosity is associated with an impaired CD4 T cell recovery after initiation of antiretroviral therapy. Clinical infectious diseases, 46(12), pp. 1921-5. Cary, N.C.: The University of Chicago Press 10.1086/588479
Lucas, Michaela; Ulsenheimer, Axel; Pfafferot, Katja; Heeg, Malte H J; Gaudieri, Silvana; Grüner, Norbert; Rauch, Andri; Gerlach, J Tilman; Jung, Maria-Christina; Zachoval, Reinhart; Pape, Gerd R; Schraut, Winfried; Santantonio, Teresa; Nitschko, Hans; Obermeier, Martin; Phillips, Rodney; Scriba, Thomas J; Semmo, Nasser; Day, Cheryl; Weber, Jonathan N; ... (2007). Tracking virus-specific CD4+ T cells during and after acute hepatitis C virus infection. PLoS ONE, 2(7), e649. Lawrence, Kans.: Public Library of Science 10.1371/journal.pone.0000649
Gaudieri, Silvana; Rauch, Andri; Park, Lawrence P; Freitas, Elizabeth; Herrmann, Susan; Jeffrey, Gary; Cheng, Wendy; Pfafferott, Katja; Naidoo, Kiloshni; Chapman, Russell; Battegay, Manuel; Weber, Rainer; Telenti, Amalio; Furrer, Hansjakob; James, Ian; Lucas, Michaela; Mallal, Simon A (2006). Evidence of viral adaptation to HLA class I-restricted immune pressure in chronic hepatitis C virus infection. Journal of virology, 80(22), pp. 11094-104. Baltimore: American Society for Microbiology 10.1128/JVI.00912-06
