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Hoces, Daniel; Lan, Jiayi; Sun, Wenfei; Geiser, Tobias; Stäubli, Melanie L; Cappio Barazzone, Elisa; Arnoldini, Markus; Challa, Tenagne D; Klug, Manuel; Kellenberger, Alexandra; Nowok, Sven; Faccin, Erica; Macpherson, Andrew; Stecher, Bärbel; Sunagawa, Shinichi; Zenobi, Renato; Hardt, Wolf-Dietrich; Wolfrum, Christian; Slack, Emma (2022). Metabolic reconstitution of germ-free mice by a gnotobiotic microbiota varies over the circadian cycle. PLoS biology, 20(9), e3001743. Public Library of Science 10.1371/journal.pbio.3001743
Yilmaz, Bahtiyar; Mooser, Catherine; Keller, Irene; Li, Hai; Zimmermann, Jakob; Bosshard, Lars; Fuhrer, Tobias; Gomez de Agüero, Mercedes; Fernandez Trigo, Nerea; Tschanz-Lischer, Heidi; Limenitakis, Julien P.; Hardt, Wolf-Dietrich; McCoy, Kathleen; Stecher, Bärbel; Excoffier, Laurent; Sauer, Uwe; Ganal-Vonarburg, Stephanie C.; Macpherson, Andrew J. (2021). Long-term evolution and short-term adaptation of microbiota strains and sub-strains in mice. Cell host & microbe, 29(4), 650-663.e9. Cell Press 10.1016/j.chom.2021.02.001
Wotzka, Sandra Y; Kreuzer, Markus; Maier, Lisa; Arnoldini, Markus; Nguyen, Bidong D; Brachmann, Alexander O; Berthold, Dorothée L; Zünd, Mirjam; Hausmann, Annika; Bakkeren, Erik; Hoces, Daniel; Gül, Ersin; Beutler, Markus; Dolowschiak, Tamas; Zimmermann, Michael; Fuhrer, Tobias; Moor, Kathrin; Sauer, Uwe; Typas, Athanasios; Piel, Jörn; ... (2019). Escherichia coli limits Salmonella Typhimurium infections after diet shifts and fat-mediated microbiota perturbation in mice. Nature microbiology, 4(12), pp. 2164-2174. Springer Nature 10.1038/s41564-019-0568-5
Garzetti, Debora; Brugiroux, Sandrine; Bunk, Boyke; Pukall, Rüdiger; McCoy, Kathleen; Macpherson, Andrew; Stecher, Bärbel (2017). High-Quality Whole-Genome Sequences of the Oligo-Mouse-Microbiota Bacterial Community. Genome Announcements, 5(42) American Society for Microbiology 10.1128/genomeA.00758-17
Brugiroux, Sandrine; Beutler, Markus; Pfann, Carina; Garzetti, Debora; Ruscheweyh, Hans-Joachim; Ring, Diana; Diehl, Manuel; Herp, Simone; Lötscher, Yvonne; Hussain, Saib; Bunk, Boyke; Pukall, Rüdiger; Huson, Daniel H; Münch, Philipp C; McHardy, Alice C; McCoy, Kathleen; Macpherson, Andrew; Loy, Alexander; Clavel, Thomas; Berry, David; ... (2016). Genome-guided design of a defined mouse microbiota that confers colonization resistance against Salmonella enterica serovar Typhimurium. Nature microbiology, 2, p. 16215. Springer Nature 10.1038/nmicrobiol.2016.215
Uchimura, Yasuhiro; Wyss, Madeleine; Brugiroux, Sandrine; Limenitakis, Julien Periclis Jean; Stecher, Bärbel; McCoy, Kathleen; Macpherson, Andrew (2016). Complete Genome Sequences of 12 Species of Stable Defined Moderately Diverse Mouse Microbiota 2. Genome Announcements, 4(5) American Society for Microbiology 10.1128/genomeA.00951-16
Studer, Nicolas; Desharnais, Lyne; Beutler, Markus; Brugiroux, Sandrine; Terrazos Miani, Miguel Angel; Menin, Laure; Schürch, Christian; McCoy, Kathy D.; Kuehne, Sarah A.; Minton, Nigel P.; Stecher, Bärbel; Bernier-Latmani, Rizlan; Hapfelmeier, Siegfried Hektor (2016). Functional Intestinal Bile Acid 7α-Dehydroxylation by Clostridium scindens Associated with Protection from Clostridium difficile Infection in a Gnotobiotic Mouse Model. Frontiers in cellular and infection microbiology, 6(191), p. 191. Frontiers 10.3389/fcimb.2016.00191
Li, Hai; Limenitakis, Julien Periclis Jean; Fuhrer, Tobias; Geuking, Markus; Lawson, Melissa A; Wyss, Madeleine; Brugiroux, Sandrine; Keller, Irene; Macpherson, Jamie A; Rupp, Sandra; Stolp, Bettina; Stein, Jens Volker; Stecher, Bärbel; Sauer, Uwe; McCoy, Kathleen; Macpherson, Andrew (2015). The outer mucus layer hosts a distinct intestinal microbial niche. Nature communications, 6, p. 8292. Nature Publishing Group 10.1038/ncomms9292
Stecher, Bärbel; Chaffron, Samuel; Käppeli, Rina; Hapfelmeier, Siegfried; Freedrich, Susanne; Weber, Thomas C; Kirundi, Jorum; Suar, Mrutyunjay; McCoy, Kathy D; von Mering, Christian; Macpherson, Andrew J; Hardt, Wolf-Dietrich (2010). Like will to like: abundances of closely related species can predict susceptibility to intestinal colonization by pathogenic and commensal bacteria. PLoS pathogens, 6(1), e1000711. San Francisco, Calif.: Public Library of Science 10.1371/journal.ppat.1000711
Slack, Emma; Hapfelmeier, Siegfried; Stecher, Bärbel; Velykoredko, Yuliya; Stoel, Maaike; Lawson, Melissa A E; Geuking, Markus B; Beutler, Bruce; Tedder, Thomas F; Hardt, Wolf-Dietrich; Bercik, Premysl; Verdu, Elena F; McCoy, Kathy D; Macpherson, Andrew J (2009). Innate and adaptive immunity cooperate flexibly to maintain host-microbiota mutualism. Science, 325(5940), pp. 617-620. Washington, D.C.: American Association for the Advancement of Science 10.1126/science.1172747
Hapfelmeier, Siegfried; Müller, Andreas J; Stecher, Bärbel; Kaiser, Patrick; Barthel, Manja; Endt, Kathrin; Eberhard, Matthias; Robbiani, Riccardo; Jacobi, Christoph A; Heikenwalder, Mathias; Kirschning, Carsten; Jung, Steffen; Stallmach, Thomas; Kremer, Marcus; Hardt, Wolf-Dietrich (2008). Microbe sampling by mucosal dendritic cells is a discrete, MyD88-independent step in DeltainvG S. Typhimurium colitis. The Journal of experimental medicine, 205(2), pp. 437-450. Rockefeller Univ. Press 10.1084/jem.20070633
Stecher, Bärbel; Macpherson, Andrew J; Hapfelmeier, Siegfried; Kremer, Marcus; Stallmach, Thomas; Hardt, Wolf-Dietrich (2005). Comparison of Salmonella enterica serovar Typhimurium colitis in germfree mice and mice pretreated with streptomycin. Infection and immunity, 73(6), pp. 3228-3241. American Society for Microbiology 10.1128/IAI.73.6.3228-3241.2005
Hapfelmeier, Siegfried; Stecher, Bärbel; Barthel, Manja; Kremer, Marcus; Müller, Andreas J; Heikenwalder, Mathias; Stallmach, Thomas; Hensel, Michael; Pfeffer, Klaus; Akira, Shizuo; Hardt, Wolf-Dietrich (2005). The Salmonella pathogenicity island (SPI)-2 and SPI-1 type III secretion systems allow Salmonella serovar typhimurium to trigger colitis via MyD88-dependent and MyD88-independent mechanisms. Journal of immunology, 174(3), pp. 1675-1685. American Association of Immunologists
Stecher, Bärbel; Hapfelmeier, Siegfried; Müller, Catherine; Kremer, Marcus; Stallmach, Thomas; Hardt, Wolf-Dietrich (2004). Flagella and chemotaxis are required for efficient induction of Salmonella enterica serovar Typhimurium colitis in streptomycin-pretreated mice. Infection and immunity, 72(7), pp. 4138-4150. American Society for Microbiology 10.1128/IAI.72.7.4138-4150.2004
Ehrbar, Kristin; Hapfelmeier, Siegfried; Stecher, Bärbel; Hardt, Wolf-Dietrich (2004). InvB is required for type III-dependent secretion of SopA in Salmonella enterica serovar Typhimurium. Journal of bacteriology, 186(4), pp. 1215-1219. American Society for Microbiology 10.1128/JB.186.4.1215-1219.2004
Hapfelmeier, Siegfried; Ehrbar, Kristin; Stecher, Bärbel; Barthel, Manja; Kremer, Marcus; Hardt, Wolf-Dietrich (2004). Role of the Salmonella pathogenicity island 1 effector proteins SipA, SopB, SopE, and SopE2 in Salmonella enterica subspecies 1 serovar Typhimurium colitis in streptomycin-pretreated mice. Infection and immunity, 72(2), pp. 795-809. American Society for Microbiology 10.1128/IAI.72.2.795-809.2004
